Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g40530 | OGI:12064810 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:25078887-25082481 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTACTCTCCTCCTCTTCCTCCCCCATCTCTCTCCAAATCTCTCTCCGATCTGTAGCCGACCACCGCCGCCGCGGCCGCCGGCCTTCTCCCCGCCGCCGCCGCCGCCACCTCGCCCTCATCGCTGCGCGCTCCCATCCCCACCGCCCCAGCGAGCAGCTCCGGAGGGGCGCGGCGCAGACGCCCCTCCCCTCTCCCCCGAGCATCCCATCCCATCCCCTCCCGACCGTGCCCTAGCCTTCTCCCCCCATCGCGCTTGCCCGCACGGGCGGCGAGCACGGCTAGGTTTTGGAGTGGGGGCGACGCCGACGCCGACGCCGACGCGGCCCGCGGTCTAGTTCTTCCTTCCATCGGCGTCCATCCATCTCGTCTCGCATCGAATTGAAGGTATTCATCTTTTTCACCTCTCGTATTGGGGATTCATCCGGGCTTGGGAATTGGGTTGTATACTTCTACCCTTCCGTTTGATTCATCCGGGCTTGGGAATTGGGTTTTGCCCGGATTACTTTGATTTGGTAGTACTGACATAATTTTTTTTTAATTTTCAAGAGGGATTTGGGGGTTCAGCTGAACCCCCTCCATGCCGCGCGACGCTAGGTCAGTCACTGGTTGCCAGGAGATACTCGGAGCAGCCGTGAATTGCTGATGGCCAACCACGACTTGGTTCTCGGCCATGGCGAGGACCCCGAGCTGGCGCTGGGGCAGAATCACCATGACTTTGGGCAGGACCACGGGCTAGGGCTCGGCCACAGCCATGAGCTCGGCCTCGGCCACGCGCACGAACATGATCTCGTCCTCGGGCAGTCGCACGAGCACGAGCACGAGCACGACCATGATCTGGGTCTCGGGAACCACCACGACAGCCAGCTGGTCCTCGCGCATGATCACCACGGCCACACCAGTGAGCTCGCGTTGGGGCATGGCCATGATGAGGACCCGCATTCCTTGGATGGTCAGGACCATGATGGGCTTGCCATGACGGAGAATCACGTGCTGACGCTCACAGATGCGCATCAGCTTGACGTCGACCAGAATATGGATCAGCTTTCTCTTGAGCAAGCCCACGAGCTCGCTCTTCAGCCAGCCCATGACTTCTCGCACGGCCCTCTTGCGGTTGCCCCTGTTGTTCAGTCGCGGAAGATGGTCGTCAGCTCCGAGTTTCAGCTTGTGGTGGGGCAGGAATTCCCTGATGTCATGAGCTGCCGCAGGGCCATCCGCAACACCGCCATCGCCTGCCACTTTGAGATACAGACGGTGAAGTCTGACAAGACGCGCTTCACTGCGAAGTGCTCTGCTGACGGCTGCCCGTGGCGCATCCATGCTGCAAAGCTCCCTGGCGTGCCCACTTTCTCCATCCGAACTATCCATGACAACCATAGTTGTGTGGGAATAAACCATCTAGGCCACCAGCAGGCATCTGTTCAATGGGTTGCAAATACTGTTGAGGAGAGGCTACGTGAGAACCCACACTGCAAGCCCAAGGAAATTTTGGAAGAAATCCACAAGTCACACGGGATCACATTATCCTATAAGCAAGCATGGAGAGGGAAGGAGCGGATCATGGCAGCAGTTCGGGGGTCCTTCGAAGAAGGGTATCGGCTCCTGCCTGAGTACTGTAGGCAAGTGGAAAGAACAAATCCAGGAAGCATAGCTCGTGTCTATGGCAATCCAGATGACAACTGCTTTCGGCGACTCTTCATATCATTCCATGCATCAATATATGGTTTTGTGAATGCATGCCGTCCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGAGGCTGCCAATGCACTGACTGTGATAGAATTTGAAACCAAGTTGCTAGAGATAGAAGACACGTCCCCAGAAGCTGTTTGTTGGATAAGACGCCTACCTCCTCGGCTTTGGGCCACAGCTTACTTTGAGGGGACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTACATGTGCTGCTCCCATATGAAGAAGCCAATGTCGGAGTTCTGAAGTAGCTGCAGTTTTCCTGTGAAAAGTTAGAAGTTAGAGTCTACTCCACCATTCAAACTTCCTCTTTGCAGATGGGCACCTTTGGTTATACTAGATACTGCTTTTGGTTTAGGTGTAATTTAATAATGTTGTGACAATACTATGTGTTCAAATCATATGCCATGGTGGACCTGCATGTCGGCCTCAGCTCATTGGATCAGACCAAATCATATGAGCTGGTGTTGAGTGAAAAGTAATTAGCTTAACCTGCTGCAAAGTGAAATTATTTTGTTAAACCTAGTGCAAAGTGCATGCAATTTTATTGAAATATCATGTGCTCAAACATGATGAGTACCGCACCAAATATGTGATACTCTTGATGTTACATCGCAAGTATGACTCATCGATTAACCTGTTGTTTATGTAATACCTGTTCACTCTGTACCTTTCTGCACTTTCCTTTTTCCTGTAGCTGTGGATTGCTGTAATTGTCTTGCTCTTTCCTGTAGCTGTGATTGCTGTGTACTGCTGATCTGTCTATCTGTCTTCCTTTTTCATGTAGCTGTGATTGCTGTGATGCTGCATTTTGCCTTGCTCTTGCCTGTAGCTGTGGTTCCTGTGCGATGCTGCATTTGCATTGCTTCATGTAATTGTGATTGCAGCATAATGCTGTATTGGCATTGGCTATTTTGTTCATGAA
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| CDS seq | ATGGCCAACCACGACTTGGTTCTCGGCCATGGCGAGGACCCCGAGCTGGCGCTGGGGCAGAATCACCATGACTTTGGGCAGGACCACGGGCTAGGGCTCGGCCACAGCCATGAGCTCGGCCTCGGCCACGCGCACGAACATGATCTCGTCCTCGGGCAGTCGCACGAGCACGAGCACGAGCACGACCATGATCTGGGTCTCGGGAACCACCACGACAGCCAGCTGGTCCTCGCGCATGATCACCACGGCCACACCAGTGAGCTCGCGTTGGGGCATGGCCATGATGAGGACCCGCATTCCTTGGATGGTCAGGACCATGATGGGCTTGCCATGACGGAGAATCACGTGCTGACGCTCACAGATGCGCATCAGCTTGACGTCGACCAGAATATGGATCAGCTTTCTCTTGAGCAAGCCCACGAGCTCGCTCTTCAGCCAGCCCATGACTTCTCGCACGGCCCTCTTGCGGTTGCCCCTGTTGTTCAGTCGCGGAAGATGGTCGTCAGCTCCGAGTTTCAGCTTGTGGTGGGGCAGGAATTCCCTGATGTCATGAGCTGCCGCAGGGCCATCCGCAACACCGCCATCGCCTGCCACTTTGAGATACAGACGGTGAAGTCTGACAAGACGCGCTTCACTGCGAAGTGCTCTGCTGACGGCTGCCCGTGGCGCATCCATGCTGCAAAGCTCCCTGGCGTGCCCACTTTCTCCATCCGAACTATCCATGACAACCATAGTTGTGTGGGAATAAACCATCTAGGCCACCAGCAGGCATCTGTTCAATGGGTTGCAAATACTGTTGAGGAGAGGCTACGTGAGAACCCACACTGCAAGCCCAAGGAAATTTTGGAAGAAATCCACAAGTCACACGGGATCACATTATCCTATAAGCAAGCATGGAGAGGGAAGGAGCGGATCATGGCAGCAGTTCGGGGGTCCTTCGAAGAAGGGTATCGGCTCCTGCCTGAGTACTGTAGGCAAGTGGAAAGAACAAATCCAGGAAGCATAGCTCGTGTCTATGGCAATCCAGATGACAACTGCTTTCGGCGACTCTTCATATCATTCCATGCATCAATATATGGTTTTGTGAATGCATGCCGTCCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGAGGCTGCCAATGCACTGACTGTGATAGAATTTGAAACCAAGTTGCTAGAGATAGAAGACACGTCCCCAGAAGCTGTTTGTTGGATAAGACGCCTACCTCCTCGGCTTTGGGCCACAGCTTACTTTGAGGGGACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTACATGTGCTGCTCCCATATGA
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| Protein seq | MANHDLVLGHGEDPELALGQNHHDFGQDHGLGLGHSHELGLGHAHEHDLVLGQSHEHEHEHDHDLGLGNHHDSQLVLAHDHHGHTSELALGHGHDEDPHSLDGQDHDGLAMTENHVLTLTDAHQLDVDQNMDQLSLEQAHELALQPAHDFSHGPLAVAPVVQSRKMVVSSEFQLVVGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAKLPGVPTFSIRTIHDNHSCVGINHLGHQQASVQWVANTVEERLRENPHCKPKEILEEIHKSHGITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIARVYGNPDDNCFRRLFISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAFGVVDEESDENWIWFLSELHELLEKNTENMPRLTILSDRRKGIIDGVDFNFPTAFHGHCMRSLSETFRKEFNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRRLPPRLWATAYFEGTRYGHLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNERREASMQWTTILVPAAERRVQEAIERARGYQVARANEAEFEVISPHEGTNIVDIRNRCCLCRGWQLYGVPCAHGVAALLSCRQNVHRYTESCFTVATYRKTYSQTIHPIPDKTLWNETSDQGQEEENKVDVIINPPKSLRPPGRPRKKRIRAEDRGRIKRVVHCSRCNQTGHFRTTCAAPI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g40530 | LOC_Os12g40530.1 | Chr12 | 25078887 | 25082481 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCAACCACGACTTGGTTCTCGGCCATGGCGAGGACCCCGAGCTGGCGCTGGGGCAGAATCACCATGACTTTGGGCAGGACCACGGGCTAGGGCTCGGCCACAGCCATGAGCTCGGCCTCGGCCACGCGCACGAACATGATCTCGTCCTCGGGCAGTCGCACGAGCACGAGCACGAGCACGACCATGATCTGGGTCTCGGGAACCACCACGACAGCCAGCTGGTCCTCGCGCATGATCACCACGGCCACACCAGTGAGCTCGCGTTGGGGCATGGCCATGATGAGGACCCGCATTCCTTGGATGGTCAGGACCATGATGGGCTTGCCATGACGGAGAATCACGTGCTGACGCTCACAGATGCGCATCAGCTTGACGTCGACCAGAATATGGATCAGCTTTCTCTTGAGCAAGCCCACGAGCTCGCTCTTCAGCCAGCCCATGACTTCTCGCACGGCCCTCTTGCGGTTGCCCCTGTTGTTCAGTCGCGGAAGATGGTCGTCAGCTCCGAGTTTCAGCTTGTGGTGGGGCAGGAATTCCCTGATGTCATGAGCTGCCGCAGGGCCATCCGCAACACCGCCATCGCCTGCCACTTTGAGATACAGACGGTGAAGTCTGACAAGACGCGCTTCACTGCGAAGTGCTCTGCTGACGGCTGCCCGTGGCGCATCCATGCTGCAAAGCTCCCTGGCGTGCCCACTTTCTCCATCCGAACTATCCATGACAACCATAGTTGTGTGGGAATAAACCATCTAGGCCACCAGCAGGCATCTGTTCAATGGGTTGCAAATACTGTTGAGGAGAGGCTACGTGAGAACCCACACTGCAAGCCCAAGGAAATTTTGGAAGAAATCCACAAGTCACACGGGATCACATTATCCTATAAGCAAGCATGGAGAGGGAAGGAGCGGATCATGGCAGCAGTTCGGGGGTCCTTCGAAGAAGGGTATCGGCTCCTGCCTGAGTACTGTAGGCAAGTGGAAAGAACAAATCCAGGAAGCATAGCTCGTGTCTATGGCAATCCAGATGACAACTGCTTTCGGCGACTCTTCATATCATTCCATGCATCAATATATGGTTTTGTGAATGCATGCCGTCCGCTCATTGGGCTTGACAGAACCATTCTCAAAAACAAGTATCTCGGCACCTTGTTTCTTGCCACAGGTTTCGATGGTGATGGTGCCCTGTTTCCTCTTGCATTTGGTGTGGTTGATGAGGAATCTGATGAGAATTGGATATGGTTTCTGTCTGAGCTGCATGAATTGCTGGAGAAGAACACAGAGAATATGCCAAGGCTCACTATATTGTCTGATAGACGCAAGGGAATAATCGATGGAGTTGACTTCAACTTCCCAACTGCATTCCATGGGCATTGTATGCGCAGTCTCAGTGAAACTTTCCGAAAGGAGTTCAATAACTCAGTGCTTGTCAACCTTCTCTGGGAGGCTGCCAATGCACTGACTGTGATAGAATTTGAAACCAAGTTGCTAGAGATAGAAGACACGTCCCCAGAAGCTGTTTGTTGGATAAGACGCCTACCTCCTCGGCTTTGGGCCACAGCTTACTTTGAGGGGACACGATATGGTCACCTGACAGCAAATATCACAGAATCACTGAATTCTTGGATACTGGATGCCTCTGGGCTTCCTATAATTCAGATGATGGAGTGTATCCGACGCCAGCTAATGACATGGTTCAACGAACGGCGTGAAGCAAGTATGCAGTGGACAACTATCCTCGTGCCTGCAGCGGAGCGACGGGTGCAAGAAGCAATTGAGCGTGCACGGGGCTACCAAGTTGCCCGAGCCAATGAGGCTGAATTTGAGGTCATCTCGCCTCACGAGGGAACTAACATTGTGGACATCCGCAACAGGTGTTGTTTGTGCCGTGGGTGGCAGCTCTATGGTGTGCCTTGTGCTCATGGTGTGGCAGCGCTGCTTTCCTGCAGACAGAATGTCCACCGTTATACAGAGAGCTGCTTCACCGTTGCGACATACCGCAAGACATACTCACAGACGATCCATCCTATCCCGGACAAAACCCTTTGGAACGAGACGTCTGATCAAGGCCAAGAAGAAGAGAACAAGGTGGATGTGATCATCAACCCGCCAAAATCCTTGAGGCCTCCCGGGAGGCCTAGGAAGAAGAGAATCCGTGCAGAGGACCGTGGGCGAATCAAGAGGGTTGTACACTGCAGCCGCTGCAACCAAACAGGCCATTTCAGAACTACATGTGCTGCTCCCATATGA
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| Protein seq | MANHDLVLGHGEDPELALGQNHHDFGQDHGLGLGHSHELGLGHAHEHDLVLGQSHEHEHEHDHDLGLGNHHDSQLVLAHDHHGHTSELALGHGHDEDPHSLDGQDHDGLAMTENHVLTLTDAHQLDVDQNMDQLSLEQAHELALQPAHDFSHGPLAVAPVVQSRKMVVSSEFQLVVGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAKLPGVPTFSIRTIHDNHSCVGINHLGHQQASVQWVANTVEERLRENPHCKPKEILEEIHKSHGITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIARVYGNPDDNCFRRLFISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAFGVVDEESDENWIWFLSELHELLEKNTENMPRLTILSDRRKGIIDGVDFNFPTAFHGHCMRSLSETFRKEFNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRRLPPRLWATAYFEGTRYGHLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNERREASMQWTTILVPAAERRVQEAIERARGYQVARANEAEFEVISPHEGTNIVDIRNRCCLCRGWQLYGVPCAHGVAALLSCRQNVHRYTESCFTVATYRKTYSQTIHPIPDKTLWNETSDQGQEEENKVDVIINPPKSLRPPGRPRKKRIRAEDRGRIKRVVHCSRCNQTGHFRTTCAAPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.222621 | 1.305748 | 1.383363 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0597300 | RBH | 3.570620 | 2.109113 | 5.829481 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0597300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019570 | RBH | 1.019104 | 6.867098 | 3.827148 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019690 | RBH | 0.639971 | 3.470165 | 3.527150 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020010 | RBH | 1.800722 | 7.177560 | 7.285092 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019330 | RBH | 0.296997 | 0.226306 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018940 | RBH | 10.268041 | 7.694790 | 13.049567 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0334600 | RBH | 7.341887 | 21.8969985 | 17.609372 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018810 | RBH | 0.656915 | 1.227103 | 0.749630 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0364500 | RBH | 6.8763195 | 16.6048305 | 12.4539735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019060 | RBH | 0.365852 | 0.359422 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019290 | RBH | 1.417163 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019200 | RBH | 9.466825 | 12.093225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019240 | RBH | 0.599863 | 0.0 | 1.908276 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019420 | RBH | 1.387539 | 13.550007 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019060 | RBH | 0.602203 | 5.266673 | 3.392193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018740 | RBH | 4.780860 | 33.631927 | 13.465932 |
