Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g40090 | OGI:12063990 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:24784682-24786310 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATGGATGTGAGCAGGATTCGTTTCTTCAGGCTCATGACAGGGGATTTTGCTCATGGCATTGTAAGTATCTTTTCTTCAGGTTTTTGTCATTTCAAGCTGTTAAAACTTGTGATTACTGAAAGGAAGATATGCAAATAAGCCATGGTGTTGGTAGGATATAGTGTGTGGGCTTCATATATTACTATGTTAAGAGTAGAGTTTGTATGTCAAAGTGGCATTGCAGAAAAGTATAATCATCCTGAAAGAATCAGTGTTTTTCTGCAATTCCGTTTTCAGACTTTCAGTACCTGCTAATTAGACACGGCATTCATCCGGCCAACTAAAAAAAATCATATTGCAGTATCATCCAACAAAGTTTAAAATTGTGTTTTCATTTCAGAGCATACCTGAGAAGGTTGCAGAGATTTTCAGTGGCCAGATCACCAAAGGGTTCAACCTGAAATCACCCAGCGGCGAAACATGGCGTGTCGGCGTCGCAAAAGTTGCTGATGAGCTGATCCTCAAATCAGGATGGGAGGATTTTGCCAAGGCTCATGAATTGCAGGAGAATGACCTCCTGTTCTTCACTTGCAATGGCCATGGCAATGGCAGCTGTTCCTTTGATGTACTAATCTTTGATGCAAGTGGCTGTGAGAAAGTGTCTTGCTTCTTCACTGGTAAAAAGAACAGCTACATGTGCAAGAATTTCAACAGTATAGGCGGTCAGGTTGCTGGGCAATATCTTTCAAGTGATTCTGAAGATACTAGCACACCATCAGTTCTAATTGGATCGCCTCACAAGGCCTCTACTTCAAAGAAATTGAGTGGCAAGACCAAGACTAATCCAAGTAAGCAGTGTTTTAGAATGTTCTTTTGAGGATTTGATGTTGTGAAATAAGCCTGAAGCCAAAAATATGTTCTACTTATTCATTTTGTTAACAGATAAAGATTATGGAAATTTGTGAATTTTCAACAGGGAAGGAACCTGAAGATCCAAACTGTAGCCACTGGCATGTGATTGAGGAAAAGAATACTGATGATGATGAACATGCTGACTACCACTACACGAGGTTTGCCAATTACCTGACTGGCGAGGAACGAGATGAGATATTCAGTTTGGTATCCCTGCAACCAGGCAATCCTGTGTTTGTAGTTGTTCTGCAGACGGCGCATGTTCGTCGCAGGAACATCCTGGTCAGTCCAATTATTCAGCTGTTATGATCAAAACAAAAATCTCGTATACAACTTTTTGCGCGCTAACTTAGATCGTCATATAAAAGCGAAGAAATTTTCATGTAAAAAATCTTTATGTTTGACAAATAGTACTCTTTGAGCTGACTCCAGTTAATGTTGTCCATGCAGATCGTCCCCACTAGATTTGCAGCTGATCATCTTGAGAGAAAATCACATGACATCCTGCTGATAAGACCAAACAGAAAACAGAAGTGGTCTGTCAAATACTACTACCTTTCAAACACAACCAGGGGATTCAACTGCCATCGATGGATCAAGTTCATCCGCGAAAACAGGCTGCGAGAGGGAAATGTCTGCATCTTTGAGCTGATGAAAGGCGCAAGGCGACCGACCATGACTGTTCATGTCATTGGCAAGGCCGATAACCGGTTTGTTCTACTGGGCTAAGTTCCAGG
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| CDS seq | ATGGATGTGAGCAGGATTCGTTTCTTCAGGCTCATGACAGGGGATTTTGCTCATGGCATTAGCATACCTGAGAAGGTTGCAGAGATTTTCAGTGGCCAGATCACCAAAGGGTTCAACCTGAAATCACCCAGCGGCGAAACATGGCGTGTCGGCGTCGCAAAAGTTGCTGATGAGCTGATCCTCAAATCAGGATGGGAGGATTTTGCCAAGGCTCATGAATTGCAGGAGAATGACCTCCTGTTCTTCACTTGCAATGGCCATGGCAATGGCAGCTGTTCCTTTGATGTACTAATCTTTGATGCAAGTGGCTGTGAGAAAGTGTCTTGCTTCTTCACTGGTAAAAAGAACAGCTACATGTGCAAGAATTTCAACAGTATAGGCGGTCAGGTTGCTGGGCAATATCTTTCAAGTGATTCTGAAGATACTAGCACACCATCAGTTCTAATTGGATCGCCTCACAAGGCCTCTACTTCAAAGAAATTGAGTGGCAAGACCAAGACTAATCCAAGGAAGGAACCTGAAGATCCAAACTGTAGCCACTGGCATGTGATTGAGGAAAAGAATACTGATGATGATGAACATGCTGACTACCACTACACGAGGTTTGCCAATTACCTGACTGGCGAGGAACGAGATGAGATATTCAGTTTGGTATCCCTGCAACCAGGCAATCCTGTGTTTGTAGTTGTTCTGCAGACGGCGCATGTTCGTCGCAGGAACATCCTGATCGTCCCCACTAGATTTGCAGCTGATCATCTTGAGAGAAAATCACATGACATCCTGCTGATAAGACCAAACAGAAAACAGAAGTGGTCTGTCAAATACTACTACCTTTCAAACACAACCAGGGGATTCAACTGCCATCGATGGATCAAGTTCATCCGCGAAAACAGGCTGCGAGAGGGAAATGTCTGCATCTTTGAGCTGATGAAAGGCGCAAGGCGACCGACCATGACTGTTCATGTCATTGGCAAGGCCGATAACCGGTTTGTTCTACTGGGCTAA
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| Protein seq | MDVSRIRFFRLMTGDFAHGISIPEKVAEIFSGQITKGFNLKSPSGETWRVGVAKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEKVSCFFTGKKNSYMCKNFNSIGGQVAGQYLSSDSEDTSTPSVLIGSPHKASTSKKLSGKTKTNPRKEPEDPNCSHWHVIEEKNTDDDEHADYHYTRFANYLTGEERDEIFSLVSLQPGNPVFVVVLQTAHVRRRNILIVPTRFAADHLERKSHDILLIRPNRKQKWSVKYYYLSNTTRGFNCHRWIKFIRENRLREGNVCIFELMKGARRPTMTVHVIGKADNRFVLLG |
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| Function | B3 domain-containing protein LOC_Os12g40090 [UniProtKB/Swiss-Prot:Q2QMT5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g40090 | LOC_Os12g40090.1 | Chr12 | 24784682 | 24786310 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATGTGAGCAGGATTCGTTTCTTCAGGCTCATGACAGGGGATTTTGCTCATGGCATTAGCATACCTGAGAAGGTTGCAGAGATTTTCAGTGGCCAGATCACCAAAGGGTTCAACCTGAAATCACCCAGCGGCGAAACATGGCGTGTCGGCGTCGCAAAAGTTGCTGATGAGCTGATCCTCAAATCAGGATGGGAGGATTTTGCCAAGGCTCATGAATTGCAGGAGAATGACCTCCTGTTCTTCACTTGCAATGGCCATGGCAATGGCAGCTGTTCCTTTGATGTACTAATCTTTGATGCAAGTGGCTGTGAGAAAGTGTCTTGCTTCTTCACTGGTAAAAAGAACAGCTACATGTGCAAGAATTTCAACAGTATAGGCGGTCAGGTTGCTGGGCAATATCTTTCAAGTGATTCTGAAGATACTAGCACACCATCAGTTCTAATTGGATCGCCTCACAAGGCCTCTACTTCAAAGAAATTGAGTGGCAAGACCAAGACTAATCCAAGGAAGGAACCTGAAGATCCAAACTGTAGCCACTGGCATGTGATTGAGGAAAAGAATACTGATGATGATGAACATGCTGACTACCACTACACGAGGTTTGCCAATTACCTGACTGGCGAGGAACGAGATGAGATATTCAGTTTGGTATCCCTGCAACCAGGCAATCCTGTGTTTGTAGTTGTTCTGCAGACGGCGCATGTTCGTCGCAGGAACATCCTGATCGTCCCCACTAGATTTGCAGCTGATCATCTTGAGAGAAAATCACATGACATCCTGCTGATAAGACCAAACAGAAAACAGAAGTGGTCTGTCAAATACTACTACCTTTCAAACACAACCAGGGGATTCAACTGCCATCGATGGATCAAGTTCATCCGCGAAAACAGGCTGCGAGAGGGAAATGTCTGCATCTTTGAGCTGATGAAAGGCGCAAGGCGACCGACCATGACTGTTCATGTCATTGGCAAGGCCGATAACCGGTTTGTTCTACTGGGCTAA
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| Protein seq | MDVSRIRFFRLMTGDFAHGISIPEKVAEIFSGQITKGFNLKSPSGETWRVGVAKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEKVSCFFTGKKNSYMCKNFNSIGGQVAGQYLSSDSEDTSTPSVLIGSPHKASTSKKLSGKTKTNPRKEPEDPNCSHWHVIEEKNTDDDEHADYHYTRFANYLTGEERDEIFSLVSLQPGNPVFVVVLQTAHVRRRNILIVPTRFAADHLERKSHDILLIRPNRKQKWSVKYYYLSNTTRGFNCHRWIKFIRENRLREGNVCIFELMKGARRPTMTVHVIGKADNRFVLLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0592300 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g40120 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0592300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019220 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019330 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019660 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018980 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0330300 | SBH | 0.0869585 | 0.0797065 | 1.345864 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0359600 | RBH | 0.1497765 | 0 | 0.8064135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018880 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018710 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018400 | RBH | 0.0 | 0.0 | 0.607428 |
