Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g39030 | OGI:12062430 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:24007355-24010009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACGATTTCTCTTCGTCCATGGAGGAAGCTGGCCACTGCCACCGGCGGCCGCAACGAGGACCCCTCGTCCCCGTCGCCGCCATTGCCGAGGATCATCATGTCCCCGACGCCCCTCCTCCTCCTCCTGCTGCTGCAGCAGCTGGTACGTATATATATCACACACATCTATATATCTCCCTCTCTTCTGTATAATTTTCTTCTTATGTTTATGTGTATATATATATATATATATACTGTATGTCTGTATGCGTGCTTGCTCTCCTTCTTGCTCATCGATCAGAAATTCGGCAAAATGTGGCGAAATTTATAATTAAACGTCCACTGCTGGCTGCTGGTATGTATTCAAGTGCTAATTTTTTCTTCTTCTTCTTCTTCTTCTTCACCAATGGAGATCGATCACTTCTGTTTCTCACTTGCACTGAATTTCAATTAATTTCATGCTTCCCCTGCACCACTAACCTAGCTAGCTAGTCCCAAGAATATGCCGATCTAATCCGCCACCATCCTAATCACTCCGGCCAATTTGCTTCCCAAAATGCCGCCGTCGATCATTACATTGGGATGAACGACAGAGAAAGAGAGAGGAGCAGATTAATTAGTGCTACTACAAGACACCGCTTCAACACAACCCAACGGCTAGTTTCAGGCCACTCACATGGAGTACTCCTACGCATTAGTTGGTGATAAATTTAATCAGCGATTTTAAGCATATATATATATATACATACATACATACATATATATATATATATATATATATATATATATATATATATATATCCAGCCATCACTCAGATCACAATCACATGCCATGCTCTTGTTTGCATTATTCATTAATACTATAATCCAACTGCATGCTAGTTAATTTGATCAGGGTCACGAACTCGCGTGCAGGGTAAATTGAAAAACCTGATATTTGCGTGATCTCTCTTGATGCGTGGCTACACTACTTTGCAGCTTAATTATTTAATTTGCTCGTGCAAATTAAAGTGAGTCGTTCCTCTCCAAATTAATTAGCTTAGCGCATATGTACGTGTTACTTTCAAGTGATTACTATTTATTCGTTTTGTTGACTGCACGCGTGTGGAATATTGCTCTCGCCTTTTCTATATACGATCAGTAGGAACAATATTTCCCTTAAGTAATCTAGAGAGTAGTACATATAAACCAAAGTACTTTGGGGGTTAAATAGCTATAGTGTTGGGGAGTAATTAAATAAACTTGTCCGGCTGATTATTAATTTGTTTCTTGGGTTGTGACGGCTGCCACGCACGTGCAGAGAGGAAAGTACACCTGGCACATTATGGCATGGCATATCGTGATGTTACTTCTATTTTATAGGTCCCACACAAAAATTTTATACCTGTCATAACAAACAGTTGAACACATGTATAAAGTATTAAATATAAGTTAAAAGTTAACTAATTGCACATATTGCGACCAATTTGTGAGACAAATCTTTTAAACCAAATTACTCCATGATTTGACAATGTGGTACTAAGTAAACATTTGCTAATTATGATTAATTATGCTTAATAATTCATCTAGCTATTTATTGATGGATTCTGTAATTAGTTTTTTTATTAATGTTCAAACACCCCATACGATACCCTGTATAAGTACCCGACACATTAACTGGATCTAAACAACACATTAACTGCTTTTGCATTCTGCTGCTGCTGCTGCTCTAGCATACACAGGCCTGTCAGAGGAGGAATCAACCAACGACAGCTTCAAGAACCAGGATCTGTTTGATGTTGTTGCGTCCTGTGTGAAACAAACCGCTGATGCTGGTCAGCAGCAGCCGAGTTTCAGTTACCCAGCAGCTAGTACTCCTATTTCAGTACTACAAGTTCTGCGTCCCAGGGATCCTAACCTCAACTTCACTGGTACACTATTTAATTAGCGATGAAGTGTTTATATATTAATTATACAGTTTCAAAATGCATGCCAATATGACCACTGGTATTTGCAAATTAATAAGCTATCGGTTAAACTTGAAAAAGTTTGACGCCACTTATTCATATCAGCTAGCTAGCTCACGCAGTAGTTCTATTAACTCATAATCTGTCAGTCCCTAAATATTTGACGCCGTTGATTTTTTTTAAATATGTTTGACCGTTCATCTTATTCAAAAAGTTTAAGTAATTATTAATTCTTTTCTTATCATTTGATTCATTGTTAAATATACTTTTATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAAACAAACGGTCAAACATGTTTAGAAAAGATCAGCGGCGTCGAATATTTAGGGACGGAGGGAGTACGTGTGTATATGTCGGCATGCACACTGGCTAACGCCCATTAATTTCCACCTCCATGACTCCATTTGATCCATGTATTAGCTGTGCTGGTGGGTGAAGGCTCAAGGAAGCGCAAAGATGAGCCAAATGGATGTGGAGCTCATCATTTGGGAAAGGAAAATATGGAGAAAGACCAACCCTCCAAAGACATGGCAACATGCGTCCACTGCTCCAAAGTATATACGGCAAAATCGACTAACGGTACATCTCATCTCAGGAGGCACCTCACAAGCAAGTGCCTCAAGAGAAAAGGGCTCACTGAGGAACTTGCTAAGCTCACCAGTACAAAGAAGGCCCGTAAAATTCGTTAG
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| CDS seq | ATGGACGATTTCTCTTCGTCCATGGAGGAAGCTGGCCACTGCCACCGGCGGCCGCAACGAGGACCCCTCGTCCCCGTCGCCGCCATTGCCGAGGATCATCATGTCCCCGACGCCCCTCCTCCTCCTCCTGCTGCTGCAGCAGCTGAAATTCGGCAAAATGTGGCGAAATTTATAATTAAACGTCCACTGCTGGCTGCTGCATACACAGGCCTGTCAGAGGAGGAATCAACCAACGACAGCTTCAAGAACCAGGATCTGTTTGATGTTGTTGCGTCCTGTGTGAAACAAACCGCTGATGCTGGTCAGCAGCAGCCGAGTTTCAGTTACCCAGCAGCTAGTACTCCTATTTCAGTACTACAAGTTCTGCGTCCCAGGGATCCTAACCTCAACTTCACTGCTGTGCTGGTGGGTGAAGGCTCAAGGAAGCGCAAAGATGAGCCAAATGGATGTGGAGCTCATCATTTGGGAAAGGAAAATATGGAGAAAGACCAACCCTCCAAAGACATGGCAACATGCGTCCACTGCTCCAAAGTATATACGGCAAAATCGACTAACGGTACATCTCATCTCAGGAGGCACCTCACAAGCAAGTGCCTCAAGAGAAAAGGGCTCACTGAGGAACTTGCTAAGCTCACCAGTACAAAGAAGGCCCGTAAAATTCGTTAG
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| Protein seq | MDDFSSSMEEAGHCHRRPQRGPLVPVAAIAEDHHVPDAPPPPPAAAAAEIRQNVAKFIIKRPLLAAAYTGLSEEESTNDSFKNQDLFDVVASCVKQTADAGQQQPSFSYPAASTPISVLQVLRPRDPNLNFTAVLVGEGSRKRKDEPNGCGAHHLGKENMEKDQPSKDMATCVHCSKVYTAKSTNGTSHLRRHLTSKCLKRKGLTEELAKLTSTKKARKIR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g39030 | LOC_Os12g39030.1 | Chr12 | 24007355 | 24010009 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACGATTTCTCTTCGTCCATGGAGGAAGCTGGCCACTGCCACCGGCGGCCGCAACGAGGACCCCTCGTCCCCGTCGCCGCCATTGCCGAGGATCATCATGTCCCCGACGCCCCTCCTCCTCCTCCTGCTGCTGCAGCAGCTGAAATTCGGCAAAATGTGGCGAAATTTATAATTAAACGTCCACTGCTGGCTGCTGCATACACAGGCCTGTCAGAGGAGGAATCAACCAACGACAGCTTCAAGAACCAGGATCTGTTTGATGTTGTTGCGTCCTGTGTGAAACAAACCGCTGATGCTGGTCAGCAGCAGCCGAGTTTCAGTTACCCAGCAGCTAGTACTCCTATTTCAGTACTACAAGTTCTGCGTCCCAGGGATCCTAACCTCAACTTCACTGCTGTGCTGGTGGGTGAAGGCTCAAGGAAGCGCAAAGATGAGCCAAATGGATGTGGAGCTCATCATTTGGGAAAGGAAAATATGGAGAAAGACCAACCCTCCAAAGACATGGCAACATGCGTCCACTGCTCCAAAGTATATACGGCAAAATCGACTAACGGTACATCTCATCTCAGGAGGCACCTCACAAGCAAGTGCCTCAAGAGAAAAGGGCTCACTGAGGAACTTGCTAAGCTCACCAGTACAAAGAAGGCCCGTAAAATTCGTTAG
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| Protein seq | MDDFSSSMEEAGHCHRRPQRGPLVPVAAIAEDHHVPDAPPPPPAAAAAEIRQNVAKFIIKRPLLAAAYTGLSEEESTNDSFKNQDLFDVVASCVKQTADAGQQQPSFSYPAASTPISVLQVLRPRDPNLNFTAVLVGEGSRKRKDEPNGCGAHHLGKENMEKDQPSKDMATCVHCSKVYTAKSTNGTSHLRRHLTSKCLKRKGLTEELAKLTSTKKARKIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39020 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018550 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018660 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019000 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018340 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017910 | RBH | 0.0 | 2.066289 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0319300 | RBH | 0 | 0.0856725 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017830 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0348900 | RBH | 0.0531105 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017990 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018180 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018230 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018150 | RBH | 0.0 | 1.085273 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017830 | RBH | 0.0 | 13.347921 | 0.0 |
