Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g38840 | OGI:12062150 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:23863588-23866446 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACGATTTCGACGTAGTAGTAGTCGTTATCTCAGAAGCTAAGGACCTATGAATTGTATTTCCGTCGTAGTAGAATTCACCCTTGGGATCAAGGATTTGTTCGTTGATGAATCCCATGAGTTGTTCTTGAACTGCAGCGATAAATTCCTTGTGTGTGAGGTTATCCCTCATGCGAATAAACTATATGAATGTATGAAATTAATTAGTAATTAAACAACAAATCGATACGTACACAATGAAATTTTCAATTTATTTGTACGTACATCGAGCTCTCTTGTGGTGATGATTTGGTCTGCAAGGCAGTGGCAATACTCGCACACGTAGTAGCCGCACAAGTTAGTTCCCTGCTTTTGCTTTGCGCACTATAAATAAATGACAAACGGCGAGAGATCTAATTAATATACACTTGTATGTATTTGAATTGGAGATTCAATATAAATGTAGAGCATGTGTACTCACAGGAAAATTAAACTTCCACCTAAGTCTTTCTCTCCATTTACCGCGGACCAAATGACGGAACCGATACCAAGCCCTAGATGGAGTTTAAAGCTATGATTCGTAGTAGCAATTAATTATAACAAGATTCTTAATTAACATAGGAACTTATGACAGTACCTGTCTATAAGTTCGAAAATATTGTCAAACGTAGACTCTTTTTTATCCATTGAGTCATATACGTTGACGGTGCAGGCCTCCAAGTCGAAGAGTAAAAGGACCCAGTGGAATCTGCAATGTGCATCGGATGCATTACGTATGAAACACTTAGCATGTTCGTACGGGAATGAAATTTGGTATAGGAAGACAGTAAAAACTAACTCTGTGTTGTACGGCAATAGTACGAACGTCTTGTAATGATGCGCCTTCAGGAGATGGATGAGATTGTCCTCTGTGGCTTGCGGATACTGGTTGAGCATTGCGACATTTACTTTCCGAGGGTCGATGAATCCAGTATCGAAAACCCCCCGCCGTCGGGCCCTTTGAATATCCATTCTACAACAATAAAAGGAATTATATATTATATATAGTCTACTTATATACAAGGACCTAATTAATTGAAAGAAACGTAATAAGAAATCTAACTGAACGATACTTACAAAATCCAGCAACTCATAATAGAGACATCGAGGGCGTCCAGCTGGTATAGTTCGTAGATACCCTTGAAATTGATCCAGAGAATATCATCTCCTTGCAAGAAGTCCGTGTCCCTGATCCTCGCTCCGATCATCTCTCTACCGGTGGCGCTCATCTCCATGTACAGTTGATGGAATTTGTACATTTGTGTGGGTAGGGACTGCAGCTGCTCAGGCTTGACAAGCGGTTTACCAAGTTCGTACATGTATTTCACTTCCGCCTTTTCGATTGGTGCGCCTCGTAGCAATTGATTTGTAGTTAGCCCGGTGTCATTAATAAATTCTTGTATTCCAAAATCTTCACCGGTCACCAACGGCTCGATCTCCTGGTTTGGTTGCTCTCCAAGCTGAGGGACTGGTTTGGACTTTCCAGAAGATGCTTTCTTAAGTGTTCGCTCATAGTCCGATAGCTTTATGGCCTCCTTGGCAGGTGCAGACATACCCCTGAAGAAGTTCCTGACACTCGGGTCTATAGGAATATTCTTTTCTGGACTTCGAGGCTTCAATTGTCTCCTGACTTCTGATGCCACATAAGCGTCAAGCTCCTCTTGCGTGCAATCGTACCCCGGGTCCTTGTTTTTTGCGGCGTCAACTTTCGCCTTCTTCGTTGCCCTTGTGGGGGCAGGCGGTGGAGCTTGGGGGGCCCTTGACTTGGAAGGTGCCGGACGAGGAGCTTGCGGAGGAGTCGGTGTAGGAGCCTGAGGAGGAGTCGGTGCAGGAGCCTGAGGACACATTGATGTCGTTACCGCAACAGTTTAAGATCTTCGACCAGTGGTCTTAGGTACACATCGATGTCGTTACCAGGTTGCTTGGGGCCTTGAATAATAATCGGCATCATTATGTACTTCCTCTTCATGCATAGCCAAGGGGGGAGGTTGTAGATACACATCGTAACGGGCCAAGTGCTATGGCCGCTGCTCATCTCTCCAAAAGGATTCATGCCATCCGTACTTAAACCAAACCATATGTTTCGTGCATCCTTTCCAAAGTCTTTAAATTTTCTGTCGATGTTTCGCCACTGCGAACCATCGGCGGGGTGTCTCAGCATCCCGTCCTGTTGATGCTCTTCAGCGTGCCATCGCATCATTCTAGCATTCCCCTTGTTTCTAAACAAACGCCTTAGCCATGGTATTATAGGGAAATACCACATTACCTTAGCCGGAATTCTCTTCTTTGTTAGCTGCCCGTCAACTTCTCCTGGATCGTCTCGTCTAATCTTGTATCGTAGTGCTTTGCAAACAGGGCATGCTTCTAGGTTCTCGTACTCCTCACCGCAATATAGGATACAATCATTTGGACATGCGTGAATCTTCTGAACTTACAGTCCTAGAGGGCAGACTATCTTCTCAGCCTCGTACGTTGTCTCGGGCAATTTGTTTCTCTTCGGAAGAATGTTCTTGACGAGTCTCAATAAATCACCAAATGCCTTGTCACTAACACCATTTTTTGCCTTCCATTGCAAGAACTCCAGAGTGGCATCCAACTTTTTGTGCCCCTGCTCGCAACCTGGGTACAACGACGTTCTGTGGTCCTCTAACATCTTGTCCAATTTATGGGCCCCCTTTTCACTTTCGCAGTCCTCCTTAGCGTCCTGCAACATCTGACCAAGATCATCCACAACGTCGTTACCATCAGCATCCCTTTCGTCCTCGCCCGTTTGATTTCCTTCAAATCCAGCGTACTGAGCAAAGTCCGGAATATTGTCGTCTTCCACTTCATCTTCTTCCAT
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| CDS seq | ATGGAAGAAGATGAAGTGGAAGACGACAATATTCCGGACTTTGCTCAGTACGCTGGATTTGAAGGAAATCAAACGGGCGAGGACGAAAGGGATGCTGATGGTAACGACGTTGTGGATGATCTTGGTCAGATGTTGCAGGACGCTAAGGAGGACTGCGAAAGTGAAAAGGGGGCCCATAAATTGGACAAGATGTTAGAGGACCACAGAACGTCGTTGTACCCAGGTTGCGAGCAGGGGCACAAAAAGTTGGATGCCACTCTGGAGTTCTTGCAATGGAAGGCAAAAAATGGTGTTAGTGACAAGGCATTTGGTGATTTATTGAGACTCGTCAAGAACATTCTTCCGAAGAGAAACAAATTGCCCGAGACAACGTACGAGGCTGAGAAGATAGTCTGCCCTCTAGGACTAAACAAGGGGAATGCTAGAATGATGCGATGGCACGCTGAAGAGCATCAACAGGACGGGATGCTGAGACACCCCGCCGATGGTTCGCAGTGGCGAAACATCGACAGAAAATTTAAAGACTTTGGAAAGGATGCACGAAACATATGGTTTGGTTTAAGTACGGATGGCATGAATCCTTTTGGAGAGATGAGCAGCGGCCATAGCACTTGGCCCGTTACGATGTGTATCTACAACCTCCCCCCTTGGCTATGCATGAAGAGGAAGTACATAATGATGCCGATTATTATTCAAGGCCCCAAGCAACCTGGTAACGACATCGATGTGTACCTAAGACCACTGGCTCCTGCACCGACTCCTCCTCAGGCTCCTACACCGACTCCTCCGCAAGCTCCTCGTCCGGCACCTTCCAAGTCAAGGGCCCCCCAAGCTCCACCGCCTGCCCCCACAAGGGCAACGAAGAAGGCGAAAGTTGACGCCGCAAAAAACAAGGACCCGGGGTACGATTGCACGCAAGAGGAGCTTGACGCTTATGTGGCATCAGAAGTCAGGAGACAATTGAAGCCTCGAAGTCCAGAAAAGAATATTCCTATAGACCCGAGTGTCAGGAACTTCTTCAGGGGTATGTCTGCACCTGCCAAGGAGGCCATAAAGCTATCGGACTATGAGCGAACACTTAAGAAAGCATCTTCTGGAAAGTCCAAACCAGTCCCTCAGCTTGGAGAGCAACCAAACCAGGAGATCGAGCCGTTGGTGACCGGTGAAGATTTTGGAATACAAGAATTTATTAATGACACCGGGCTAACTACAAATCAATTGCTACGAGGCGCACCAATCGAAAAGGCGGAAGTGAAATACATGTACGAACTTGGTAAACCGCTTGTCAAGCCTGAGCAGCTGCAGTCCCTACCCACACAAATGTACAAATTCCATCAACTGTACATGGAGATGAGCGCCACCGGTAGAGAGATGATCGGAGCGAGGATCAGGGACACGGACTTCTTGCAAGGAGATGATATTCTCTGGATCAATTTCAAGGGTATCTACGAACTATACCAGCTGGACGCCCTCGATGTCTCTATTATGAGTTGCTGGATTTTAATGGATATTCAAAGGGCCCGACGGCGGGGGGTTTTCGATACTGGATTCATCGACCCTCGGAAAGTAAATGTCGCAATGCTCAACCAGTATCCGCAAGCCACAGAGGACAATCTCATCCATCTCCTGAAGGCGCATCATTACAAGACGTTCGTACTATTGCCGTACAACACAGAATTCCACTGGGTCCTTTTACTCTTCGACTTGGAGGCCTGCACCGTCAACGTATATGACTCAATGGATAAAAAAGAGTCTACGTTTGACAATATTTTCGAACTTATAGACAGGGCTTGGTATCGGTTCCGTCATTTGGTCCGCGGTAAATGGAGAGAAAGACTTAGGTGGAAGTTTAATTTTCCTTGCGCAAAGCAAAAGCAGGGAACTAACTTGTGCGGCTACTACGTGTGCGAGTATTGCCACTGCCTTGCAGACCAAATCATCACCACAAGAGAGCTCGATTTTATTCGCATGAGGGATAACCTCACACACAAGGAATTTATCGCTGCAGTTCAAGAACAACTCATGGGATTCATCAACGAACAAATCCTTGATCCCAAGGGTGAATTCTACTACGACGGAAATACAATTCATAGGTCCTTAGCTTCTGAGATAACGACTACTACTACGTCGAAATCGTAG
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| Protein seq | MEEDEVEDDNIPDFAQYAGFEGNQTGEDERDADGNDVVDDLGQMLQDAKEDCESEKGAHKLDKMLEDHRTSLYPGCEQGHKKLDATLEFLQWKAKNGVSDKAFGDLLRLVKNILPKRNKLPETTYEAEKIVCPLGLNKGNARMMRWHAEEHQQDGMLRHPADGSQWRNIDRKFKDFGKDARNIWFGLSTDGMNPFGEMSSGHSTWPVTMCIYNLPPWLCMKRKYIMMPIIIQGPKQPGNDIDVYLRPLAPAPTPPQAPTPTPPQAPRPAPSKSRAPQAPPPAPTRATKKAKVDAAKNKDPGYDCTQEELDAYVASEVRRQLKPRSPEKNIPIDPSVRNFFRGMSAPAKEAIKLSDYERTLKKASSGKSKPVPQLGEQPNQEIEPLVTGEDFGIQEFINDTGLTTNQLLRGAPIEKAEVKYMYELGKPLVKPEQLQSLPTQMYKFHQLYMEMSATGREMIGARIRDTDFLQGDDILWINFKGIYELYQLDALDVSIMSCWILMDIQRARRRGVFDTGFIDPRKVNVAMLNQYPQATEDNLIHLLKAHHYKTFVLLPYNTEFHWVLLLFDLEACTVNVYDSMDKKESTFDNIFELIDRAWYRFRHLVRGKWRERLRWKFNFPCAKQKQGTNLCGYYVCEYCHCLADQIITTRELDFIRMRDNLTHKEFIAAVQEQLMGFINEQILDPKGEFYYDGNTIHRSLASEITTTTTSKS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g38840 | LOC_Os12g38840.1 | Chr12 | 23863588 | 23866446 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAAGAAGATGAAGTGGAAGACGACAATATTCCGGACTTTGCTCAGTACGCTGGATTTGAAGGAAATCAAACGGGCGAGGACGAAAGGGATGCTGATGGTAACGACGTTGTGGATGATCTTGGTCAGATGTTGCAGGACGCTAAGGAGGACTGCGAAAGTGAAAAGGGGGCCCATAAATTGGACAAGATGTTAGAGGACCACAGAACGTCGTTGTACCCAGGTTGCGAGCAGGGGCACAAAAAGTTGGATGCCACTCTGGAGTTCTTGCAATGGAAGGCAAAAAATGGTGTTAGTGACAAGGCATTTGGTGATTTATTGAGACTCGTCAAGAACATTCTTCCGAAGAGAAACAAATTGCCCGAGACAACGTACGAGGCTGAGAAGATAGTCTGCCCTCTAGGACTAAACAAGGGGAATGCTAGAATGATGCGATGGCACGCTGAAGAGCATCAACAGGACGGGATGCTGAGACACCCCGCCGATGGTTCGCAGTGGCGAAACATCGACAGAAAATTTAAAGACTTTGGAAAGGATGCACGAAACATATGGTTTGGTTTAAGTACGGATGGCATGAATCCTTTTGGAGAGATGAGCAGCGGCCATAGCACTTGGCCCGTTACGATGTGTATCTACAACCTCCCCCCTTGGCTATGCATGAAGAGGAAGTACATAATGATGCCGATTATTATTCAAGGCCCCAAGCAACCTGGTAACGACATCGATGTGTACCTAAGACCACTGGCTCCTGCACCGACTCCTCCTCAGGCTCCTACACCGACTCCTCCGCAAGCTCCTCGTCCGGCACCTTCCAAGTCAAGGGCCCCCCAAGCTCCACCGCCTGCCCCCACAAGGGCAACGAAGAAGGCGAAAGTTGACGCCGCAAAAAACAAGGACCCGGGGTACGATTGCACGCAAGAGGAGCTTGACGCTTATGTGGCATCAGAAGTCAGGAGACAATTGAAGCCTCGAAGTCCAGAAAAGAATATTCCTATAGACCCGAGTGTCAGGAACTTCTTCAGGGGTATGTCTGCACCTGCCAAGGAGGCCATAAAGCTATCGGACTATGAGCGAACACTTAAGAAAGCATCTTCTGGAAAGTCCAAACCAGTCCCTCAGCTTGGAGAGCAACCAAACCAGGAGATCGAGCCGTTGGTGACCGGTGAAGATTTTGGAATACAAGAATTTATTAATGACACCGGGCTAACTACAAATCAATTGCTACGAGGCGCACCAATCGAAAAGGCGGAAGTGAAATACATGTACGAACTTGGTAAACCGCTTGTCAAGCCTGAGCAGCTGCAGTCCCTACCCACACAAATGTACAAATTCCATCAACTGTACATGGAGATGAGCGCCACCGGTAGAGAGATGATCGGAGCGAGGATCAGGGACACGGACTTCTTGCAAGGAGATGATATTCTCTGGATCAATTTCAAGGGTATCTACGAACTATACCAGCTGGACGCCCTCGATGTCTCTATTATGAGTTGCTGGATTTTAATGGATATTCAAAGGGCCCGACGGCGGGGGGTTTTCGATACTGGATTCATCGACCCTCGGAAAGTAAATGTCGCAATGCTCAACCAGTATCCGCAAGCCACAGAGGACAATCTCATCCATCTCCTGAAGGCGCATCATTACAAGACGTTCGTACTATTGCCGTACAACACAGAATTCCACTGGGTCCTTTTACTCTTCGACTTGGAGGCCTGCACCGTCAACGTATATGACTCAATGGATAAAAAAGAGTCTACGTTTGACAATATTTTCGAACTTATAGACAGGGCTTGGTATCGGTTCCGTCATTTGGTCCGCGGTAAATGGAGAGAAAGACTTAGGTGGAAGTTTAATTTTCCTTGCGCAAAGCAAAAGCAGGGAACTAACTTGTGCGGCTACTACGTGTGCGAGTATTGCCACTGCCTTGCAGACCAAATCATCACCACAAGAGAGCTCGATTTTATTCGCATGAGGGATAACCTCACACACAAGGAATTTATCGCTGCAGTTCAAGAACAACTCATGGGATTCATCAACGAACAAATCCTTGATCCCAAGGGTGAATTCTACTACGACGGAAATACAATTCATAGGTCCTTAGCTTCTGAGATAACGACTACTACTACGTCGAAATCGTAG
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| Protein seq | MEEDEVEDDNIPDFAQYAGFEGNQTGEDERDADGNDVVDDLGQMLQDAKEDCESEKGAHKLDKMLEDHRTSLYPGCEQGHKKLDATLEFLQWKAKNGVSDKAFGDLLRLVKNILPKRNKLPETTYEAEKIVCPLGLNKGNARMMRWHAEEHQQDGMLRHPADGSQWRNIDRKFKDFGKDARNIWFGLSTDGMNPFGEMSSGHSTWPVTMCIYNLPPWLCMKRKYIMMPIIIQGPKQPGNDIDVYLRPLAPAPTPPQAPTPTPPQAPRPAPSKSRAPQAPPPAPTRATKKAKVDAAKNKDPGYDCTQEELDAYVASEVRRQLKPRSPEKNIPIDPSVRNFFRGMSAPAKEAIKLSDYERTLKKASSGKSKPVPQLGEQPNQEIEPLVTGEDFGIQEFINDTGLTTNQLLRGAPIEKAEVKYMYELGKPLVKPEQLQSLPTQMYKFHQLYMEMSATGREMIGARIRDTDFLQGDDILWINFKGIYELYQLDALDVSIMSCWILMDIQRARRRGVFDTGFIDPRKVNVAMLNQYPQATEDNLIHLLKAHHYKTFVLLPYNTEFHWVLLLFDLEACTVNVYDSMDKKESTFDNIFELIDRAWYRFRHLVRGKWRERLRWKFNFPCAKQKQGTNLCGYYVCEYCHCLADQIITTRELDFIRMRDNLTHKEFIAAVQEQLMGFINEQILDPKGEFYYDGNTIHRSLASEITTTTTSKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0551900 | SBH | 0.448835 | 0.946902 | 1.829674 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36990 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0551900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016770 | SBH | 0.000000 | 0.0 | 1.942580 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016900 | SBH | 0.000000 | 0.0 | 1.187957 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017250 | SBH | 0.802915 | 0.0 | 3.866589 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016580 | SBH | 0.154245 | 0.314596 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016100 | SBH | 0.000000 | 6.587844 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0302600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016050 | SBH | 0.000000 | 0.231287 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0347600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016280 | SBH | 0.060207 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016470 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016670 | SBH | 0.266807 | 9.123776 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016460 | SBH | 0.121054 | 1.229021 | 1.396467 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016130 | SBH | 0.718539 | 8.851929 | 4.644514 |
