Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g34310 | OGI:12054480 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:20796047-20798683 | ||||||||
| Gene Symbol | OsFbox666, Os_F0411 | ||||||||||
| DNA seq | ATGGACTCCAAGAAGATGAACGGGGCGATGACTTCGCCGGCGGTGGCCGCCGTCGATCTGATCAGCGGCCTCAGCGACGACGTGCTCCTGCTCATCCTCGGCTTCTTGCCGGCGGCGAGTGACGTGGCGCGGACATCCGTGCTGTCGACGCGGTGGCGCCACCTCTGGGCGCTCTCCCCGGCGCTCCGGTTCGCCGTCGGGCCGCTGTCCGACGCCGACGTCGCCGCCGCACGCCGGCTCGTCCCGGCCGTCGAATCCGTCCTCGCGCGGCGCGACGCCGGCGGCGGCGCCGACGCCGACGTGAAGGACCTGGAGATCTCCTTCCCGCACGACCGCGCCGCCGCGGACGACATCATCACGCCGGCGCGCGTCGCCGCGTGGCTCCGCTTCGCCGAGCGCCGCGTCACGGGGGCGTTCACGCTCGAGCTGCCATTCGAGCTGGACATGTTCGGGCGGAGCCGGAGGCTCCTCCCCCACGCCGAGCTCCCGCGCTCGGCTAGGTTCACGGCGATGCGCCTCGCGCTCGGCGGCGCGGACCTCGCGGTCCCCCCGGCCATCGCCGCCGCGCGCGCCGCCGCGTTCCCGGCTCTCACCGACGTCCACCTCAGCCACGCGCGCCTCGACGTCGGCGCCCGGGGCGACGACCTCCGCCTCTGCAACCTCCTCTCGTCGTCGTGCTGCCCCCGGCTGCGGCGGCTGCGGCTCAGCCACGTCGGCGGCCTGCCCACGCTGCGCCTCGACGCCGCCGCGACGCTCGAGGAGCTCCACCTCCGCCACCTCACCGGCACGTGGTGCCTGCAGGTGGACGCGCCGGGCCTCCGGTCGTTCGCCGTCGAGGAGACGCGCCTCTACTTCGGCCCGGAGCCGGAGGCGACGACGAGGATCGCCGCGCCGAGGCTGGACGCGCTGACGTACAGGTACAGCGACCCCGGCGGCGAGACCAACCTGCGGTTCAACGGCGGCCGCGTCGAGGAGCTCCGCCTCGCGTCGCACGCCGTCCATGGCGGCACCAACAACGCGGTGGCCGCGTGGTTTCTGCGGCAATGCGCCGCCGCCGCCGATCGGCTCGACGTCGAACTGACAGTGCCAGTGGGCAAGGTAAGGTGCTCTACAGCCTCTACTGCTCTCAGGGTTTGAATTCTTGACATGCCTGTTTTTGTCGCCGGGCCCCCCGAAACAACCAAAATCACCGGAATTTCGGTATTTCTAGGCCGAAATTATTTCAAATTTTAACGAATTTTGAATAAATTTGAATAAAATTTGACCTAATTCACAAAAAAATCAAAAAGAAAACGAAAATTTCGGGCGAGATTTGTCCTTGTGGGGGGGGTGAAATTAGAACCAACTCAACCCAATAAAAATCAAAGAATTCGAATTTATGTCAATGTTCGTCCAAATTCAAATTCTGGTGGAACTTCACTCAACATCCAATTTTCGCTGAAATTCAGATCAGGTTTCATGAAGTTCATGTTAACTCAATACTTTGTCTAGGCCAATAAAATATTGCTATAGAATTTCAGAACCTTGTACATATATACCTTTGCCCAAATTGTATAACATGCAAGTACTATACTCTACCATGTGTACTCTCTCCATTCTGAAATAAATGCACTCCTCTAATTTAAATATTATCAGAAAATTAGCGTAGGAGGTTTCCGATGTATTCTATTTTCCTTTAAAACTTGCATATCAAACTCGATTTCTTAAAATGAAAAGGAAATCGACACAGGAGAAACTTGTCCTTTTTTATATTAATTCATACTTAGTAAACCATAAGTAGTGGACAAATTACTGCTATGCTTTTGTGGTTTACAACATTTACCATTGCATTGAACTTATAGCTAGGAATATCTAATAGTTGTGATCATTTTTTTTTCAGCTGATCATAGATCATGAAGATATAATGAAAGATATACCAGAACTTCTCAACGTTACCGACTTAAGAATAAATGTGGAGGCATCAATGAGTCCACATAGAGCTGGGGCCAGCCTAGCCAAGCTCATTGCAAAGTGTTGCAAAGCTGAATGTCTCTCTATTAATATCAGCGACCAGGTATAATTCGCTTGGAATTTCTAAACCCAAAATTGGTATTATAGCATCAAAGTTCTTGTTTGCATCGATTTTTTTTTATTTTGGTACAATTTTAACAGCATTAAAAGCTATCTCCATTCCATCCAAATTTATGTTACTGGCAACTATTAAGTCAACACGCAAATGTTGATGAAACTATTATCTGACATTCTGACCTAGATTAGTGCTGATCTAATTTGCAGGGACGTAATCAGTGTGTGAATTCTATGTGTATCTGTGACCAACCAGAGGGTTGGGAGAAGGAAACGATCTCTCTTGAGTGCCTTCGAATTGTGGAGATCAGTAGCTTCCTACCTTGCAAGGACCAGATACGTCTCATGCATCTGCTACTAGCAAGTGCGCCGGTGCTGGAGAGGATGACCGTAACAATCTACAAGCAATATGAAGACGCCAAGGATTTGGATCTTGGAATCCTCGGTTTTAGGGGGAGATGGTCATATTCTGGCCCAGAATATCATCGCTCTGGTTTTAGTGTTCGTTATGAGTGGACGCCGAGCAAGAGGAGGAAAGTGGTCGAGATGAACCAGGAGGAGGGGAAGCTTTGA
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| CDS seq | ATGGACTCCAAGAAGATGAACGGGGCGATGACTTCGCCGGCGGTGGCCGCCGTCGATCTGATCAGCGGCCTCAGCGACGACGTGCTCCTGCTCATCCTCGGCTTCTTGCCGGCGGCGAGTGACGTGGCGCGGACATCCGTGCTGTCGACGCGGTGGCGCCACCTCTGGGCGCTCTCCCCGGCGCTCCGGTTCGCCGTCGGGCCGCTGTCCGACGCCGACGTCGCCGCCGCACGCCGGCTCGTCCCGGCCGTCGAATCCGTCCTCGCGCGGCGCGACGCCGGCGGCGGCGCCGACGCCGACGTGAAGGACCTGGAGATCTCCTTCCCGCACGACCGCGCCGCCGCGGACGACATCATCACGCCGGCGCGCGTCGCCGCGTGGCTCCGCTTCGCCGAGCGCCGCGTCACGGGGGCGTTCACGCTCGAGCTGCCATTCGAGCTGGACATGTTCACGGCGATGCGCCTCGCGCTCGGCGGCGCGGACCTCGCGGTCCCCCCGGCCATCGCCGCCGCGCGCGCCGCCGCGTTCCCGGCTCTCACCGACGTCCACCTCAGCCACGCGCGCCTCGACGTCGGCGCCCGGGGCGACGACCTCCGCCTCTGCAACCTCCTCTCGTCGTCGTGCTGCCCCCGGCTGCGGCGGCTGCGGCTCAGCCACGTCGGCGGCCTGCCCACGCTGCGCCTCGACGCCGCCGCGACGCTCGAGGAGCTCCACCTCCGCCACCTCACCGGCACGTGGTGCCTGCAGGTGGACGCGCCGGGCCTCCGGTCGTTCGCCGTCGAGGAGACGCGCCTCTACTTCGGCCCGGAGCCGGAGGCGACGACGAGGATCGCCGCGCCGAGGCTGGACGCGCTGACGTACAGGTACAGCGACCCCGGCGGCGAGACCAACCTGCGGTTCAACGGCGGCCGCGTCGAGGAGCTCCGCCTCGCGTCGCACGCCGTCCATGGCGGCACCAACAACGCGGTGGCCGCGTGGTTTCTGCGGCAATGCGCCGCCGCCGCCGATCGGCTCGACGTCGAACTGACAGTGCCAGTGGGCAAGCTGATCATAGATCATGAAGATATAATGAAAGATATACCAGAACTTCTCAACGTTACCGACTTAAGAATAAATGTGGAGGCATCAATGAGTCCACATAGAGCTGGGGCCAGCCTAGCCAAGCTCATTGCAAAGTGTTGCAAAGCTGAATGTCTCTCTATTAATATCAGCGACCAGGGACGTAATCAGTGTGTGAATTCTATGTGTATCTGTGACCAACCAGAGGGTTGGGAGAAGGAAACGATCTCTCTTGAGTGCCTTCGAATTGTGGAGATCAGTAGCTTCCTACCTTGCAAGGACCAGATACGTCTCATGCATCTGCTACTAGCAAGTGCGCCGGTGCTGGAGAGGATGACCGTAACAATCTACAAGCAATATGAAGACGCCAAGGATTTGGATCTTGGAATCCTCGGTTTTAGGGGGAGATGGTCATATTCTGGCCCAGAATATCATCGCTCTGGTTTTAGTGTTCGTTATGAGTGGACGCCGAGCAAGAGGAGGAAAGTGGTCGAGATGAACCAGGAGGAGGGGAAGCTTTGA
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| Protein seq | MDSKKMNGAMTSPAVAAVDLISGLSDDVLLLILGFLPAASDVARTSVLSTRWRHLWALSPALRFAVGPLSDADVAAARRLVPAVESVLARRDAGGGADADVKDLEISFPHDRAAADDIITPARVAAWLRFAERRVTGAFTLELPFELDMFTAMRLALGGADLAVPPAIAAARAAAFPALTDVHLSHARLDVGARGDDLRLCNLLSSSCCPRLRRLRLSHVGGLPTLRLDAAATLEELHLRHLTGTWCLQVDAPGLRSFAVEETRLYFGPEPEATTRIAAPRLDALTYRYSDPGGETNLRFNGGRVEELRLASHAVHGGTNNAVAAWFLRQCAAAADRLDVELTVPVGKLIIDHEDIMKDIPELLNVTDLRINVEASMSPHRAGASLAKLIAKCCKAECLSINISDQGRNQCVNSMCICDQPEGWEKETISLECLRIVEISSFLPCKDQIRLMHLLLASAPVLERMTVTIYKQYEDAKDLDLGILGFRGRWSYSGPEYHRSGFSVRYEWTPSKRRKVVEMNQEEGKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g34310 | LOC_Os12g34310.1 | Chr12 | 20796047 | 20798683 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACTCCAAGAAGATGAACGGGGCGATGACTTCGCCGGCGGTGGCCGCCGTCGATCTGATCAGCGGCCTCAGCGACGACGTGCTCCTGCTCATCCTCGGCTTCTTGCCGGCGGCGAGTGACGTGGCGCGGACATCCGTGCTGTCGACGCGGTGGCGCCACCTCTGGGCGCTCTCCCCGGCGCTCCGGTTCGCCGTCGGGCCGCTGTCCGACGCCGACGTCGCCGCCGCACGCCGGCTCGTCCCGGCCGTCGAATCCGTCCTCGCGCGGCGCGACGCCGGCGGCGGCGCCGACGCCGACGTGAAGGACCTGGAGATCTCCTTCCCGCACGACCGCGCCGCCGCGGACGACATCATCACGCCGGCGCGCGTCGCCGCGTGGCTCCGCTTCGCCGAGCGCCGCGTCACGGGGGCGTTCACGCTCGAGCTGCCATTCGAGCTGGACATGTTCACGGCGATGCGCCTCGCGCTCGGCGGCGCGGACCTCGCGGTCCCCCCGGCCATCGCCGCCGCGCGCGCCGCCGCGTTCCCGGCTCTCACCGACGTCCACCTCAGCCACGCGCGCCTCGACGTCGGCGCCCGGGGCGACGACCTCCGCCTCTGCAACCTCCTCTCGTCGTCGTGCTGCCCCCGGCTGCGGCGGCTGCGGCTCAGCCACGTCGGCGGCCTGCCCACGCTGCGCCTCGACGCCGCCGCGACGCTCGAGGAGCTCCACCTCCGCCACCTCACCGGCACGTGGTGCCTGCAGGTGGACGCGCCGGGCCTCCGGTCGTTCGCCGTCGAGGAGACGCGCCTCTACTTCGGCCCGGAGCCGGAGGCGACGACGAGGATCGCCGCGCCGAGGCTGGACGCGCTGACGTACAGGTACAGCGACCCCGGCGGCGAGACCAACCTGCGGTTCAACGGCGGCCGCGTCGAGGAGCTCCGCCTCGCGTCGCACGCCGTCCATGGCGGCACCAACAACGCGGTGGCCGCGTGGTTTCTGCGGCAATGCGCCGCCGCCGCCGATCGGCTCGACGTCGAACTGACAGTGCCAGTGGGCAAGCTGATCATAGATCATGAAGATATAATGAAAGATATACCAGAACTTCTCAACGTTACCGACTTAAGAATAAATGTGGAGGCATCAATGAGTCCACATAGAGCTGGGGCCAGCCTAGCCAAGCTCATTGCAAAGTGTTGCAAAGCTGAATGTCTCTCTATTAATATCAGCGACCAGGGACGTAATCAGTGTGTGAATTCTATGTGTATCTGTGACCAACCAGAGGGTTGGGAGAAGGAAACGATCTCTCTTGAGTGCCTTCGAATTGTGGAGATCAGTAGCTTCCTACCTTGCAAGGACCAGATACGTCTCATGCATCTGCTACTAGCAAGTGCGCCGGTGCTGGAGAGGATGACCGTAACAATCTACAAGCAATATGAAGACGCCAAGGATTTGGATCTTGGAATCCTCGGTTTTAGGGGGAGATGGTCATATTCTGGCCCAGAATATCATCGCTCTGGTTTTAGTGTTCGTTATGAGTGGACGCCGAGCAAGAGGAGGAAAGTGGTCGAGATGAACCAGGAGGAGGGGAAGCTTTGA
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| Protein seq | MDSKKMNGAMTSPAVAAVDLISGLSDDVLLLILGFLPAASDVARTSVLSTRWRHLWALSPALRFAVGPLSDADVAAARRLVPAVESVLARRDAGGGADADVKDLEISFPHDRAAADDIITPARVAAWLRFAERRVTGAFTLELPFELDMFTAMRLALGGADLAVPPAIAAARAAAFPALTDVHLSHARLDVGARGDDLRLCNLLSSSCCPRLRRLRLSHVGGLPTLRLDAAATLEELHLRHLTGTWCLQVDAPGLRSFAVEETRLYFGPEPEATTRIAAPRLDALTYRYSDPGGETNLRFNGGRVEELRLASHAVHGGTNNAVAAWFLRQCAAAADRLDVELTVPVGKLIIDHEDIMKDIPELLNVTDLRINVEASMSPHRAGASLAKLIAKCCKAECLSINISDQGRNQCVNSMCICDQPEGWEKETISLECLRIVEISSFLPCKDQIRLMHLLLASAPVLERMTVTIYKQYEDAKDLDLGILGFRGRWSYSGPEYHRSGFSVRYEWTPSKRRKVVEMNQEEGKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0527500 | SBH | 0.000000 | 0.128595 | 2.677134 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34300 | SBH | 0.000000 | 0.086181 | 0.686678 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0527500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015410 | RBH | 0.0 | 0.0 | 0.150059 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015550 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015930 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014800 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0272000 | RBH | 0.0209275 | 0.527054 | 0.0219035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014950 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0303200 | SBH | 0.098163 | 0.7468865 | 0.0200955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015440 | SBH | 0.537473 | 1.423424 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015190 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015430 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015160 | SBH | 0.140813 | 0.0 | 0.089475 |
