Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g34022 | OGI:10028540 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:20545013-20546074 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGATCATCAAAGGAAGAGAGGTACTGAGAATGGGACTGATCCGTAGGATCGGAGATGGTCGTACCACTGAAATATGGCATGATCAGTGGATAGATGGACTACTGAACAATGAAGCCGTTAGGGAGAATGACTGATGATCCAGTTCAGTTAGTTGCCGATCTCATGTTGCAGAATACAAACCAATGGGATGTGGAGAAGGTGCAGCGGATTTTCTTTCCGTTGGATGCGGCTGCTATTCTGAACATGCCAAGGCCGAGAACAGAGCAAGATGATTTTTGGGCTTGGGCATGGGACAGAACGGGCATATTTACGGTGAGATCTGCGTACAGGGAACTCATTCAGCGCTGTGGCCTGTCTGAACCTGCTACGGGATCGTCCACGGGTGACGAGGCTACCTGGAAAGCACTGTGGAGACTCCGGATAATGCCTAAGATAAGAGTGTTCTGGTGGCGGGTGGTGAAAAATTTGCTACCCTGTGCTGCTGAACTCCGCAGAAGCCATATGAAAGAAATAAGTAATTGTCCTCTCTGTGGCAATGACAATGAAACAAAGTTTCATGCATTAGTCGAGTGTGAGCATGCAAAATTGTTTTGGAGTGCGGCTCAGGATCTTTTTGATCTCAAGATGCCACGGTTAAACCCAGCTACATGGTCGCGGGACGTGTTGGATGCAGATATCATGAGCAAACGGGAGGCGGCAATTGCAGTCTCTGTAATGTGGACCATCTGGGGGAGCCGAAACAGCTACAACCATGGCGATGTCAAGTACCAGCCGTTGAGGTCTGTTGAATTGGTTGATGAGCTCATTAAATCTCTGGAGATTCCAGCTCAGGAGGACCCATCGGCTGTGGTTCAGAAGTGGGCTCGACCTGCTTTGGGATGGATGAAACTGAACACTGATGGAGCACTGAACTTGCAGGATGGAGTTGCGGGTGCAGGAATTGTTGCACGGGATAATACAGGAAACTTTGTCACTGCTGAGTGTCGAAGATATGACCATATCAGTGATCCGAGCACAGTGGAGATGCTGGCGTGTAGAGATGCAGTCATGTTAGCACTGTAA
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| CDS seq | ATGAAGCCGTTAGGGAGAATGACTGATGATCCAGTTCAGTTAGTTGCCGATCTCATGTTGCAGAATACAAACCAATGGGATGTGGAGAAGGTGCAGCGGATTTTCTTTCCGTTGGATGCGGCTGCTATTCTGAACATGCCAAGGCCGAGAACAGAGCAAGATGATTTTTGGGCTTGGGCATGGGACAGAACGGGCATATTTACGGTGAGATCTGCGTACAGGGAACTCATTCAGCGCTGTGGCCTGTCTGAACCTGCTACGGGATCGTCCACGGGTGACGAGGCTACCTGGAAAGCACTGTGGAGACTCCGGATAATGCCTAAGATAAGAGTGTTCTGGTGGCGGGTGGTGAAAAATTTGCTACCCTGTGCTGCTGAACTCCGCAGAAGCCATATGAAAGAAATAAGTAATTGTCCTCTCTGTGGCAATGACAATGAAACAAAGTTTCATGCATTAGTCGAGTGTGAGCATGCAAAATTGTTTTGGAGTGCGGCTCAGGATCTTTTTGATCTCAAGATGCCACGGTTAAACCCAGCTACATGGTCGCGGGACGTGTTGGATGCAGATATCATGAGCAAACGGGAGGCGGCAATTGCAGTCTCTGTAATGTGGACCATCTGGGGGAGCCGAAACAGCTACAACCATGGCGATGTCAAGTACCAGCCGTTGAGGTCTGTTGAATTGGTTGATGAGCTCATTAAATCTCTGGAGATTCCAGCTCAGGAGGACCCATCGGCTGTGGTTCAGAAGTGGGCTCGACCTGCTTTGGGATGGATGAAACTGAACACTGATGGAGCACTGAACTTGCAGGATGGAGTTGCGGGTGCAGGAATTGTTGCACGGGATAATACAGGAAACTTTGTCACTGCTGAGTGTCGAAGATATGACCATATCAGTGATCCGAGCACAGTGGAGATGCTGGCGTGTAGAGATGCAGTCATGTTAGCACTGTAA
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| Protein seq | MKPLGRMTDDPVQLVADLMLQNTNQWDVEKVQRIFFPLDAAAILNMPRPRTEQDDFWAWAWDRTGIFTVRSAYRELIQRCGLSEPATGSSTGDEATWKALWRLRIMPKIRVFWWRVVKNLLPCAAELRRSHMKEISNCPLCGNDNETKFHALVECEHAKLFWSAAQDLFDLKMPRLNPATWSRDVLDADIMSKREAAIAVSVMWTIWGSRNSYNHGDVKYQPLRSVELVDELIKSLEIPAQEDPSAVVQKWARPALGWMKLNTDGALNLQDGVAGAGIVARDNTGNFVTAECRRYDHISDPSTVEMLACRDAVMLAL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g34022 | LOC_Os12g34022.1 | Chr12 | 20545013 | 20546074 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGCCGTTAGGGAGAATGACTGATGATCCAGTTCAGTTAGTTGCCGATCTCATGTTGCAGAATACAAACCAATGGGATGTGGAGAAGGTGCAGCGGATTTTCTTTCCGTTGGATGCGGCTGCTATTCTGAACATGCCAAGGCCGAGAACAGAGCAAGATGATTTTTGGGCTTGGGCATGGGACAGAACGGGCATATTTACGGTGAGATCTGCGTACAGGGAACTCATTCAGCGCTGTGGCCTGTCTGAACCTGCTACGGGATCGTCCACGGGTGACGAGGCTACCTGGAAAGCACTGTGGAGACTCCGGATAATGCCTAAGATAAGAGTGTTCTGGTGGCGGGTGGTGAAAAATTTGCTACCCTGTGCTGCTGAACTCCGCAGAAGCCATATGAAAGAAATAAGTAATTGTCCTCTCTGTGGCAATGACAATGAAACAAAGTTTCATGCATTAGTCGAGTGTGAGCATGCAAAATTGTTTTGGAGTGCGGCTCAGGATCTTTTTGATCTCAAGATGCCACGGTTAAACCCAGCTACATGGTCGCGGGACGTGTTGGATGCAGATATCATGAGCAAACGGGAGGCGGCAATTGCAGTCTCTGTAATGTGGACCATCTGGGGGAGCCGAAACAGCTACAACCATGGCGATGTCAAGTACCAGCCGTTGAGGTCTGTTGAATTGGTTGATGAGCTCATTAAATCTCTGGAGATTCCAGCTCAGGAGGACCCATCGGCTGTGGTTCAGAAGTGGGCTCGACCTGCTTTGGGATGGATGAAACTGAACACTGATGGAGCACTGAACTTGCAGGATGGAGTTGCGGGTGCAGGAATTGTTGCACGGGATAATACAGGAAACTTTGTCACTGCTGAGTGTCGAAGATATGACCATATCAGTGATCCGAGCACAGTGGAGATGCTGGCGTGTAGAGATGCAGTCATGTTAGCACTGTAA
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| Protein seq | MKPLGRMTDDPVQLVADLMLQNTNQWDVEKVQRIFFPLDAAAILNMPRPRTEQDDFWAWAWDRTGIFTVRSAYRELIQRCGLSEPATGSSTGDEATWKALWRLRIMPKIRVFWWRVVKNLLPCAAELRRSHMKEISNCPLCGNDNETKFHALVECEHAKLFWSAAQDLFDLKMPRLNPATWSRDVLDADIMSKREAAIAVSVMWTIWGSRNSYNHGDVKYQPLRSVELVDELIKSLEIPAQEDPSAVVQKWARPALGWMKLNTDGALNLQDGVAGAGIVARDNTGNFVTAECRRYDHISDPSTVEMLACRDAVMLAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.306413 | 0.485940 | 0.578555 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g21680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013470 | SBH | 0.000000 | 0.0 | 4.600324 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013320 | SBH | 0.0 | 0.614242 | 0.817562 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015650 | RBH | 0.000000 | 2.503973 | 0.858274 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013430 | SBH | 0.000000 | 0.236896 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013550 | SBH | 2.146592 | 18.596924 | 8.685095 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0202200 | SBH | 2.42184 | 12.040397 | 3.897815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013040 | SBH | 0.146657 | 0.185407 | 0.758197 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0198100 | SBH | 2.988686 | 15.503323 | 19.4578315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013570 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013510 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013820 | SBH | 0.000000 | 1.045157 | 1.004393 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013350 | SBH | 0.0 | 3.392695 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013220 | SBH | 0.000000 | 0.000000 | 2.008300 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003990 | RBH | 0.0 | 3.999597 | 6.457207 |
