Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g29990 | OGI:12049040 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:17924519-17931694 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTCCATCACATCGTTTCAATTTCTTCAAACTTTTAATTTTGGTGTAGAACTAAACACAGCCTCTGTTTGAAGTATACAAAGCATTTTGAATTTCAGGCATTAAGCACTAACATCAGTTGCACAAGCCCAAAGCCCCAAAACCATCATCGAAGTTTCACACAAATTGTACTGCTCACAGGCCCCATGGTTTTCAACTAAACTGCGACTGAAAATTGCGAGTTATTCACTCGAAACAAGCCGCGCCTCAGTAATCACTAAAACTGAAACTGATAAACCACATGGCACATGAAAGCACTAGCTTCAATGGGCAAATGCTCCTGCAATTTCCACTAAACTACTAATGAACAGAACCCTGTATCATCGATGTGAGTGATGGATGGACTCGAGCAGTTTTCATTGACCGAGAAGCACTTCTTCCTTCTGAATATTCCTCACCAAGAGGCCACCTTGGACGCAGGTCATACTGTGTTAAGACAATTATCAGGCATGATAATAGCCAGTCAGTCTTATAAAACATAGAACTTACACTGTATTAACGTCAGGAGTAGAGTAAAATTACCAAGTACAAGATTCCTTCCATAACATAAATACACAACAGGTCGATCTGAAGTGTGTTCTATTTTAATGTAAGAAAATTAGACGGCCTGATTCTGAGTTCTGACAATGTGCGAATTCCATCTTCCATGATATTAATTATAGGAAAACATTTGGATAAAAAATAACTCATAAACTGATCTTCGTGGTGGATCTGCCACCATCACATGGCTACTGATATCATAAATATTGACTAGCTTTGCTCACAGGCCAAGCTTATTTGATCAATCCCCCCAGAGTGTCAAACTGAAGGAGACATGAGGAATATAAAGGCAGCTATAGGAATGGGGAAGATGGTGAAAATGTGGATTGTTTGACTGGCTTGGATGCAATTTTGACATAACACAAGCTCACCTGTTCGATGACCATATGGCTCTAAGCTTATAATATGGTAGGCCGCAAGATGAAAATACCACCAAAACCAAATTTGGCAGGTAATTTGCTAGTTTTGAGATTTGAGTATTGAGGTTTGGGAGTCGTGGGTGAAAAAAAAGACTCTGGATGACTTGATGTAAACGAAATTATCGAACTTCAACTATAGTGCCAAATGCAGTTACTTGGGATTAAAAGGACATATATGCCAAATTTACCCAAATTAAGGTCAAGAACACGATATAATCTATCCAAGTCTCACATTTCAATGTTCGTTGAAATGCCATCGGTTTAGCTTTACACTCTTCCTCCTTATCAGTAGCAACACCAACTGCCTTTTAACAAGACCTTTTTTTATTGTAGCAGCAAAGAGTTGATCATGTATCAATGCATTTTTAAACTACCAAGTTATAAGAAGCAAAAAAAGCTTTCTGTGCTTGATGGTGCACTTTGTTTTGTTCAACTCATCAACTGAGCATATTAATTTGTCATGTTACCTGCATATCATCAGGCTCATCAACAGCAGGAGGATCATCAAATCTGCCTGCAATGAAATGCTCAATACCAGTCCAAGCAATCATGACACCTGCAAAAGAAGATGCCAGAATTATGTGCAAACTGCTTAAGAATAACTAAGGGAATTAGGAGGAATCTGTACCCTGTATGGAAGAAACAGTCAAAAATAAGTTCTCAACAAGTCAAAAGGACAGAAAATAAACAGTATAACAACAACATAGAACCAAGACACAAAAATAAATAAATAATGTAGAGTCTAGATTGAGATAAAAAATGAAGATATGAAATGAGTGGCATGAAAAATGGCATTAAATCATAAATACTTCTGTTAATAATATGATTGAATATTACTGATTTACTATTCAATTGATCATGCAAATAAACTTTTTACCATTGTCAGTGCAAAGCTTTGGGGGAGGGCATACGAGCTGTAGGCCATTCTTCTCAGCGATCTGATTCAAATGAGTTCTGACATACTGGTTTGATGCAACACCTCCTGAAACAACCTTTAATAACTGAGTCAATAACACACTGGATGAACTAATGTAAAAATGTAAATATTCTAAAATGAATCAACATCAAGATATCTGAATTACAAAGTATTTAATAGAAGGCTCCATCTTCAATGCCCATTCAACTGCTCGCTGGCATCTTTCTTCCAAATGTAAAACAGCAACTCGCTGCAGAGGTCAACATCAGAAAACTACCAAAATCTTCATGAATAATGAAAATACATTGCCTATGATGTAAAAACCTGAAAAGAGGCAGCAATGTTCGCCCTTATTTGTCTGTCATCTTTTGTCGCGGATGAAATAGGAATATCATCTGTTGATCTACCATAGCACAAAAACAACAGAAGAGTTACGAGACCAAATGTCACTACCGATGAGACTGCCATGTCTGTTTCATGTAATAATTAAAAATGTTCCTTCGCCAATAAAGAAACAGAAACATTCTATACCTTTTCTAACAACCAGTTTTCTAGCAACTTGCAACCTCTTGCTATTTGTTAAACATTATCGTTCCCACTTTGTCGTTCTTGTTATTTGATCTAGCGCATTTCAAGCACAGGTTATTGTATATACGCTATAGCATAATGCCTGGGTGGGTGTTCTTTAATTAATAAAAAGAACAACGACCTTGCATGGTTGCAATAGTTTCATGTTAATTTCCTAGTGCTTGACATAAAAAAAATTTCAGTAAAATTAAAAAACAAGTATTGTAGATTATTGAGAGTTAAAGTCAAGTCTCTGCTTGTTAATCTAGAATATTATAGTCAAGGAGAGCAAACAGCATGCCAAAATACACTATTTATTTGACACACCAGCAGGCATATTAATCTTACAATGAAGACAATGGCACAAGGACTAAAACAGCCATACATGTTTCTGGATTCAATAGCCAATCGAACTTGAGTCTTCAGACCAGCATAAGAGAAATTGCAATCTTTGTGTTGTCGCATTGGAACCTGGAAGTTCACAAAAAGAGAAGGCAAGCAAACATCATGTTGACCTAACAGTCATGATAGGTGGATAACACAACATATCTACCCAGTGGATGCAAAATATCTACGTCGGCAAACTTACACTAAACTTAACAGCATTTGGATCACCTTCTAGGGCAAGCTGTTCAAGAGCAGGACCGCCACCTTTCCGCATATCAAGACCTAACCATCTCGCTGACTTGTCATAAGCCTCACCAATTGCATCATCTATTGTAGTTCCCAGTTGAACATATTGACCAAGTCCATGAGCAAGAACAAGAAGATTGTGTCCTCCTGAACATATTAACTGGTTAGGTAGCTGCCCGAACGTCATAAAAGAAAATTCACCAAACACGTAATGTTTCAACATAAGTATATCTGTTGTATTAGCACATACTCCCTCTGTCCCAAAAAGAATCAAAATCTAGGGTTTGCGATGGAATCGATTTACTGCGAGTGGCCTTGTGGTTGGTTTGCACCGGACCCAGTCGAGTTAAAATAAGTTCGACCAAGGGCAAACTTGTCTTTAATGAGTATTTCTCTCTCCAATTCCTCCAAAAATAATAAAATAAGACCGCGAGTGTCCAACAGCTAATTACAAGTTTTTTATGGTGCCCGATAGAATATTCGTGTTCTTGCGGTGTCTACCAGCTAATTGCACGTTTTTTGGATGCCCTGTAGCAAATTTTTCTGTTATGTTTGGGTATTACTCCCTCCATCCCAAAATATAAAAAGTTTTAAGGTTGGACATGGTTATTAAGAAAGTAGGTAGAAGTGAATGTTGAAGGGTTGTGATTGGATGAGTAGTGGAGGTAGGTGAGAAAAGTGAATGGCGGAGGGTTGTGATTGGTTGGGAAGAGAATGTTGGTGGAGAAGTTGTTATATTTTGGGACAAATTCTGAGGGCTAAAAGTTGTTATATTTTGGGAGTTAGGACGGAGGGAGTATTTGTTATCCCATTTTCTATTTGATTGAGCTTATTCCATACTCGCATATTGTATCAATGATTGCAATGGGCCATCATAAGATTGATTTTGCATTCTGAAAGGAGGAAATAAATGAAATAAAAGTAGTTTTTCAAAACTGGATATAATAAAGTATCGAGATGTAGCAAATGGAGTTGCCTGCCAACTAGCACTGCTTAAAAATGTTTATTTCCCTATATTGTAGTTTGACTATAGAGACATAAATTAACCATGAAGATTGTTCATTACACACCTCGTATATTTGTACATAGAACATAAAAAACTACATAGTCCTTCGAAAAGAAGGGTATGGTGGTGGAGCTTGTGAATATCTACTCCACCTCCTTTATGTTATAGGTTTTATGAATTTCCCCTAGTAGTTCTTCAATATCATATGAAAGTTATTCTACATATTGTTATCTTATTATTTGGCCTTCTAAAATACAAATTTAACATGGAAGGGTCCAAGATTCACATGTACATGTACACAAGCTAATGTTACAATTATAACTGTGTGAACATGCGAAGGGTGCCTTTATGAAGAAAATCACATTCATTTATTTCACAATACTAGGGAATGTATGATTAGTGTTTATCCATATAAAGCACGGGTGTTTAGATAGTACTTCCAAACTGTGGCAGGGACGGAACAAATACCCCATCAGGTCAAAAGCTGACTGACTAGGTGTAAGGACAAGCCTAATAGGGTTCAATCCTAGACTAGGCACTGTTGTCCATCAATTTTATGAGTACAGCTACGTCTAGTGGTAAAGCGAATGGTCATGCTTAGCGGACTTTGGGCAACTCCATAATTTTGAAGCGTGTAGAGGACATGCACACAATCATGGGGTCAATTGCTTGACATTTGAAGTTTTTATGTATTTTAGTGAAAATATTAGCAAAATTAGCACTACATTTCAAAAGAACTGCACAACATGGTGGCACTACTTCCAAAACCATGTGATTGATGATGTATTCAAACTGGAAATATAAATAAATTTATGCAAGTTCCAATGGAATCTATGTTATACATTCAAAGTCTACCAAACATCAAATATTTTTCAAAAGAGCCTTATTGTTACTGTAGAGATGTAACTCAACAAAAAATTGATAGTGCCACAGAATATAGGGATAAAGTCATAAAACACTTTGATTAGTATATACCTGAAATTAGGAGGGCCAAAAATGGGAAATCAAGATCCTTGTTCACTAACCTGACATCAATAGAACTACATTAATACAAATGCATCGATTATAGCAATAACAATAGGTTAGGTGGCTATGATAGCATTTTTAGGATTATATAATTACTTTAAGTATAGGCATGATTACAATAGTCTTAGGGCTTAGGGTCTTAGCATTTCTGGTAAAAAAAGCTCTTCTGTAATAATAATTTAAATTTCATACCTTGCATTTCATCACAATACATTCATTTTGCAAAACATGTAGCACTGAAAAATAATTTATAGTTGCAAATTTGTTCCTGCTCAAATATCGTTATGTGGTTTTTACATAGCAAGATGTTGGTCAAATGTTCGGAAGTAATACCAGTAGAAAAAGAAATCATTCACTTTTCGGTTCAAAAATTGCTAATTTACCAACCTAATGGACATTACAAATATACAATAGAAAAAAAGTGGAAGTGCAAAAGTACATAACAGAAACCAGTCGTGCTCTAGAACTAAATCCACAAAAATAAAGAGAAAAACATAAAATCCCTTACAAATGGACAGTAAAAAAATCATCGTTTCAGCTAAAAAAATCTACTATTGCTTGGCAGTGAACTGATAAAGGAACTTATGTTTCATCAGTTGAGAATGTCATCTTCATAACTCAGAAATAAAAACCAAGGTTGGATACCTGGAAACTAATGCATGTGCCTCCATATGATGAACTCCAACAATAGGCAGGCGAAATGATTTCGCTATTTTTCGAGCTTTGTGAACACCAACTGCAATTTATATGGTTCATTAAATAGCCTTCAAAGAAATGTAAGAGAGACTCAGCGAGGTTAAAAAGTAAAATCAATAAAGTTCACTCTGACTGTGTAAATAGTAGTATATGCAATGTATCATTTCAACAATCGATTACTTTACAGGTTGACATTGCGAGTGACTGCACAAGATAAAGAACTACTAACAAGTAACACCATCTAAAGGGCAAACAAGTTAATGATGAGAAATGCCCTGCATCTAAAATACTCAGCGAACTAATAGTGAGAACACAGGGTTTGGGGTGGGGAGAATGATTGAAAGATGCAAACAAGATTCTGTAACAAACTGAAAATTCAGAACTATGCCAGCATATAAGATATAATAACAGTAAATACCAGCTAATCCTATTGATCAGGAGTAAACATACAAAAGCTGATACCTCTGAGGCATAAACTAAGTCCTGGTCCTACGGTGACAGCCACTGCTGAAAGATCATTTTCTGACACATTTGCATCATCAAGTGCTTTCTGAACAACCTGCAAGGAAAATACAAAATCTATAACATAAATGTCAAAAACAGCAAGATTGAACAGAAACTCTGAAACTGAAAGCCAAACCTGATCAATCGCAAGAGAATGAGCTTCCTCGGCCATCTTCGGAGCGACGCCTCCCCACCTCACGAGTAAATCTTCCTTCCAAATGTTGTAAGCACAAAACAATACAATCAGCAGCGCACAGAGCATAGCATGACCAATAATACAGAAACAAAGTGTAAGTGGGCTGAACAGGGAAGCAGGGGGCATAGTATAGTATCTCACTTGGGAAGATACCACCTGGCTTAGGATCTCGCCATCGCCTCTAACCTGCAACCAACCAACCAACAAAAACAACAAAGAGCCAGGCACTAAGCACAAACAAATCCTACACACCGACTCCACCACTGCTACAAGCGGTCTGAAATAGGGGAGTGAGCCGCGCGTACCACGGCGGCGGCGGTGTCGTCGCAGCTGGTCTCGATGCCGAGCATGAGGAGGTCTGCGGCGGCGGCGGCGGAGGGCATTGTGGCGAGGGAGCGGAAGGTAGGAGAGGACCGTAGCGGAGGGGAGGGGGCGGGGGCGAGGAGGAGTCGGAGGAGGGGAGCGGGAAGGGGTGAGGGGAACGGTGGGGCTCGCCGGAGGAGGAGGGCGGCGGCGGCGCGGGAGGCCGGCGGCGATAAGGTGGGGAGAAGAGTGGCCGCCATTCCACTCTAGCTCGGGTTACACTGGGGTCTCTCAACAAACACCGATCTTTTTGCATCCGACGCACATGTGT
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| CDS seq | ATGGCGGCCACTCTTCTCCCCACCTTATCGCCGCCGGCCTCCCGCGCCGCCGCCGCCCTCCTCCTCCGGCGAGCCCCACCGTTCCCCTCACCCCTTCCCGCTCCCCTCCTCCGACTCCTCCTCGCCCCCGCCCCCTCCCCTCCGCTACGGTCCTCTCCTACCTTCCGCTCCCTCGCCACAATGCCCTCCGCCGCCGCCGCCGCAGACCTCCTCATGCTCGGCATCGAGACCAGCTGCGACGACACCGCCGCCGCCGTGGTTAGAGGCGATGGCGAGATCCTAAGCCAGGTGGTATCTTCCCAAGAAGATTTACTCGTGAGGTGGGGAGGCGTCGCTCCGAAGATGGCCGAGGAAGCTCATTCTCTTGCGATTGATCAGGTTGTTCAGAAAGCACTTGATGATGCAAATGTGTCAGAAAATGATCTTTCAGCAGTGGCTGTCACCGTAGGACCAGGACTTAGTTTATGCCTCAGAGTTGGTGTTCACAAAGCTCGAAAAATAGCGAAATCATTTCGCCTGCCTATTGTTGGAGTTCATCATATGGAGGCACATGCATTAGTTTCCAGGTTAGTGAACAAGGATCTTGATTTCCCATTTTTGGCCCTCCTAATTTCAGGAGGACACAATCTTCTTGTTCTTGCTCATGGACTTGGTCAATATGTTCAACTGGGAACTACAATAGATGATGCAATTGGTGAGGCTTATGACAAGTCAGCGAGATGGTTAGGTCTTGATATGCGGAAAGGTGGCGGTCCTGCTCTTGAACAGCTTGCCCTAGAAGGTGATCCAAATGCTGTTAAGTTTAGTGTTCCAATGCGACAACACAAAGATTGCAATTTCTCTTATGCTGGTCTGAAGACTCAAGTTCGATTGGCTATTGAATCCAGAAACATATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATAAGGGCGAACATTGCTGCCTCTTTTCAGCGAGTTGCTGTTTTACATTTGGAAGAAAGATGCCAGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTTGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATCAGATCGCTGAGAAGAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATATGCAGTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGAAGGAAGAAGTGCTTCTCGGTCAATGAAAACTGCTCGAGTCCATCCATCACTCACATCGATGATACAGGGTTCTGTTCATTAG
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| Protein seq | MAATLLPTLSPPASRAAAALLLRRAPPFPSPLPAPLLRLLLAPAPSPPLRSSPTFRSLATMPSAAAAADLLMLGIETSCDDTAAAVVRGDGEILSQVVSSQEDLLVRWGGVAPKMAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFRLPIVGVHHMEAHALVSRLVNKDLDFPFLALLISGGHNLLVLAHGLGQYVQLGTTIDDAIGEAYDKSARWLGLDMRKGGGPALEQLALEGDPNAVKFSVPMRQHKDCNFSYAGLKTQVRLAIESRNISTDDIPISSATKDDRQIRANIAASFQRVAVLHLEERCQRAVEWALKMEPSIKYFVVSGGVASNQYVRTHLNQIAEKNGLQLVCPPPKLCTDNGVMIAWTGIEHFIAGRFDDPPAVDEPDDMQYDLRPRWPLGEEYSEGRSASRSMKTARVHPSLTSMIQGSVH |
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| Function | Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [UniProtKB/Swiss-Prot:O22145] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g29990 | LOC_Os12g29990.1 | Chr12 | 17924519 | 17931663 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCCACTCTTCTCCCCACCTTATCGCCGCCGGCCTCCCGCGCCGCCGCCGCCCTCCTCCTCCGGCGAGCCCCACCGTTCCCCTCACCCCTTCCCGCTCCCCTCCTCCGACTCCTCCTCGCCCCCGCCCCCTCCCCTCCGCTACGGTCCTCTCCTACCTTCCGCTCCCTCGCCACAATGCCCTCCGCCGCCGCCGCCGCAGACCTCCTCATGCTCGGCATCGAGACCAGCTGCGACGACACCGCCGCCGCCGTGGTTAGAGGCGATGGCGAGATCCTAAGCCAGGTGGTATCTTCCCAAGAAGATTTACTCGTGAGGTGGGGAGGCGTCGCTCCGAAGATGGCCGAGGAAGCTCATTCTCTTGCGATTGATCAGGTTGTTCAGAAAGCACTTGATGATGCAAATGTGTCAGAAAATGATCTTTCAGCAGTGGCTGTCACCGTAGGACCAGGACTTAGTTTATGCCTCAGAGTTGGTGTTCACAAAGCTCGAAAAATAGCGAAATCATTTCGCCTGCCTATTGTTGGAGTTCATCATATGGAGGCACATGCATTAGTTTCCAGGTTAGTGAACAAGGATCTTGATTTCCCATTTTTGGCCCTCCTAATTTCAGGAGGACACAATCTTCTTGTTCTTGCTCATGGACTTGGTCAATATGTTCAACTGGGAACTACAATAGATGATGCAATTGGTGAGGCTTATGACAAGTCAGCGAGATGGTTAGGTCTTGATATGCGGAAAGGTGGCGGTCCTGCTCTTGAACAGCTTGCCCTAGAAGGTGATCCAAATGCTGTTAAGTTTAGTGTTCCAATGCGACAACACAAAGATTGCAATTTCTCTTATGCTGGTCTGAAGACTCAAGTTCGATTGGCTATTGAATCCAGAAACATATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATAAGGGCGAACATTGCTGCCTCTTTTCAGCGAGTTGCTGTTTTACATTTGGAAGAAAGATGCCAGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTTGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATCAGATCGCTGAGAAGAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATATGCAGTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGAAGGAAGAAGTGCTTCTCGGTCAATGAAAACTGCTCGAGTCCATCCATCACTCACATCGATGATACAGGGTTCTGTTCATTAG
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| Protein seq | MAATLLPTLSPPASRAAAALLLRRAPPFPSPLPAPLLRLLLAPAPSPPLRSSPTFRSLATMPSAAAAADLLMLGIETSCDDTAAAVVRGDGEILSQVVSSQEDLLVRWGGVAPKMAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFRLPIVGVHHMEAHALVSRLVNKDLDFPFLALLISGGHNLLVLAHGLGQYVQLGTTIDDAIGEAYDKSARWLGLDMRKGGGPALEQLALEGDPNAVKFSVPMRQHKDCNFSYAGLKTQVRLAIESRNISTDDIPISSATKDDRQIRANIAASFQRVAVLHLEERCQRAVEWALKMEPSIKYFVVSGGVASNQYVRTHLNQIAEKNGLQLVCPPPKLCTDNGVMIAWTGIEHFIAGRFDDPPAVDEPDDMQYDLRPRWPLGEEYSEGRSASRSMKTARVHPSLTSMIQGSVH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g29990 | LOC_Os12g29990.2 | Chr12 | 17924592 | 17931663 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCCACTCTTCTCCCCACCTTATCGCCGCCGGCCTCCCGCGCCGCCGCCGCCCTCCTCCTCCGGCGAGCCCCACCGTTCCCCTCACCCCTTCCCGCTCCCCTCCTCCGACTCCTCCTCGCCCCCGCCCCCTCCCCTCCGCTACGGTCCTCTCCTACCTTCCGCTCCCTCGCCACAATGCCCTCCGCCGCCGCCGCCGCAGACCTCCTCATGCTCGGCATCGAGACCAGCTGCGACGACACCGCCGCCGCCGTGGTTAGAGGCGATGGCGAGATCCTAAGCCAGGTGGTATCTTCCCAAGAAGATTTACTCGTGAGGTGGGGAGGCGTCGCTCCGAAGATGGCCGAGGAAGCTCATTCTCTTGCGATTGATCAGGTTGTTCAGAAAGCACTTGATGATGCAAATGTGTCAGAAAATGATCTTTCAGCAGTGGCTGTCACCGTAGGACCAGGACTTAGTTTATGCCTCAGAGTTGGTGTTCACAAAGCTCGAAAAATAGCGAAATCATTTCGCCTGCCTATTGTTGGAGTTCATCATATGGAGGCACATGCATTAGTTTCCAGGTTAGTGAACAAGGATCTTGATTTCCCATTTTTGGCCCTCCTAATTTCAGGAGGACACAATCTTCTTGTTCTTGCTCATGGACTTGGTCAATATGTTCAACTGGGAACTACAATAGATGATGCAATTGGTGAGGCTTATGACAAGTCAGCGAGATGGTTAGGTCTTGATATGCGGAAAGGTGGCGGTCCTGCTCTTGAACAGCTTGCCCTAGAAGGTGATCCAAATGCTGTTAAGTTTAGTGTTCCAATGCGACAACACAAAGATTGCAATTTCTCTTATGCTGGTCTGAAGACTCAAGTTCGATTGGCTATTGAATCCAGAAACATATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATAAGGGCGAACATTGCTGCCTCTTTTCAGCGAGTTGCTGTTTTACATTTGGAAGAAAGATGCCAGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTTGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATCAGATCGCTGAGAAGAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGGTAAAAAGTTTATTTGCATGATCAATTGA
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| Protein seq | MAATLLPTLSPPASRAAAALLLRRAPPFPSPLPAPLLRLLLAPAPSPPLRSSPTFRSLATMPSAAAAADLLMLGIETSCDDTAAAVVRGDGEILSQVVSSQEDLLVRWGGVAPKMAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFRLPIVGVHHMEAHALVSRLVNKDLDFPFLALLISGGHNLLVLAHGLGQYVQLGTTIDDAIGEAYDKSARWLGLDMRKGGGPALEQLALEGDPNAVKFSVPMRQHKDCNFSYAGLKTQVRLAIESRNISTDDIPISSATKDDRQIRANIAASFQRVAVLHLEERCQRAVEWALKMEPSIKYFVVSGGVASNQYVRTHLNQIAEKNGLQLVCPPPKLCTDNGKKFICMIN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g29990 | LOC_Os12g29990.4 | Chr12 | 17924519 | 17931694 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCGAGGAAGCTCATTCTCTTGCGATTGATCAGGTTGTTCAGAAAGCACTTGATGATGCAAATGTGTCAGAAAATGATCTTTCAGCAGTGGCTGTCACCGTAGGACCAGGACTTAGTTTATGCCTCAGAGTTGGTGTTCACAAAGCTCGAAAAATAGCGAAATCATTTCGCCTGCCTATTGTTGGAGTTCATCATATGGAGGCACATGCATTAGTTTCCAGGTTAGTGAACAAGGATCTTGATTTCCCATTTTTGGCCCTCCTAATTTCAGGAGGACACAATCTTCTTGTTCTTGCTCATGGACTTGGTCAATATGTTCAACTGGGAACTACAATAGATGATGCAATTGGTGAGGCTTATGACAAGTCAGCGAGATGGTTAGGTCTTGATATGCGGAAAGGTGGCGGTCCTGCTCTTGAACAGCTTGCCCTAGAAGGTGATCCAAATGCTGTTAAGTTTAGTGTTCCAATGCGACAACACAAAGATTGCAATTTCTCTTATGCTGGTCTGAAGACTCAAGTTCGATTGGCTATTGAATCCAGAAACATATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATAAGGGCGAACATTGCTGCCTCTTTTCAGCGAGTTGCTGTTTTACATTTGGAAGAAAGATGCCAGCGAGCAGTTGAATGGGCATTGAAGATGGAGCCTTCTATTAAATACTTTGTTGTTTCAGGAGGTGTTGCATCAAACCAGTATGTCAGAACTCATTTGAATCAGATCGCTGAGAAGAATGGCCTACAGCTCGTATGCCCTCCCCCAAAGCTTTGCACTGACAATGGTGTCATGATTGCTTGGACTGGTATTGAGCATTTCATTGCAGGCAGATTTGATGATCCTCCTGCTGTTGATGAGCCTGATGATATGCAGTATGACCTGCGTCCAAGGTGGCCTCTTGGTGAGGAATATTCAGAAGGAAGAAGTGCTTCTCGGTCAATGAAAACTGCTCGAGTCCATCCATCACTCACATCGATGATACAGGGTTCTGTTCATTAG
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| Protein seq | MAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFRLPIVGVHHMEAHALVSRLVNKDLDFPFLALLISGGHNLLVLAHGLGQYVQLGTTIDDAIGEAYDKSARWLGLDMRKGGGPALEQLALEGDPNAVKFSVPMRQHKDCNFSYAGLKTQVRLAIESRNISTDDIPISSATKDDRQIRANIAASFQRVAVLHLEERCQRAVEWALKMEPSIKYFVVSGGVASNQYVRTHLNQIAEKNGLQLVCPPPKLCTDNGVMIAWTGIEHFIAGRFDDPPAVDEPDDMQYDLRPRWPLGEEYSEGRSASRSMKTARVHPSLTSMIQGSVH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.194564 | 4.120429 | 1.253979 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0485000 | RBH | 5.753104 | 7.469023 | 4.797862 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0485000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013430 | RBH | 1.588202 | 6.497278 | 5.301684 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013590 | RBH | 0.300064 | 0.000000 | 1.753876 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013490 | RBH | 2.851442 | 2.388101 | 8.000709 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013310 | RBH | 0.870774 | 0.099557 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012960 | RBH | 12.779143 | 2.515981 | 8.019514 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0247200 | RBH | 8.561246 | 8.3179905 | 7.4436835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013130 | RBH | 1.079181 | 0.405727 | 1.421499 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0268200 | RBH | 5.409815 | 5.213246 | 5.8633005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013100 | RBH | 0.533844 | 0.196965 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013440 | RBH | 1.239371 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013310 | RBH | 14.825604 | 4.634741 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013270 | RBH | 1.726192 | 0.0 | 1.792568 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013480 | RBH | 0.613347 | 4.333338 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013130 | RBH | 0.888256 | 1.061936 | 3.912942 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013000 | RBH | 4.788265 | 2.146965 | 5.916858 |
