Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g28330 | OGI:12046940 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:16754661-16756395 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGTATTGGACCATGCATTTTGACGGGTCGAAGAGGCTTTCAGGCACTGCAGCGGGTTGTTCTAATTTCCCCTACTGGAGAAAGACTGAGCTACGTATTGTGGATATATTTTTCTATGTCTCACAACGTGGCAGAATACGAGGCGCTTCTTCACGGACTAAGGATTGCAATCTCTTTGGGAATTCGGCGTCTGATAGTTCGTGGAGATTTTCAGTTGGTTGTTAATCAAGTCATGAAAGAGTGGTCCTGCCTTGATGATAACACGACCGCCTACCGGCAGGAGGTACGCAAGTTGGAAGACAAATTCGATGGACTTGAGCTCACCCATGTTCTTCGACATAATAATGAGGCAACCGACAGACTGGCTAATTTTGGTTCAAAACGTGAAGCAGCTCCTTCCGACGTGTTTGTTGAACATCTCTACGAACCAACCGTACCAAGGAAAGAAACAATTGAGGCCACGGACACTCAAGACGTAAGTATGATTGAAGCCGACTGGAGAGAGCCCCTCATAAGATTTCTGACCAAACAAGAACTCCCTCAAGATAAAGATGAAGCCGAGCGGGTCTCCAGGCGCAGCAGACTCTATATCATTCATGAGACCGAGCTGTACAAGAAAAGTCCATCGGGAATCCTGCAACGCTGTGTGTCTTTGGAGGAGGGGAGACAATTGCTAAAGGACATGCATTCAGGCATCTGTGGTAATCACGCTGCTGCACGAACCATCGTAGGCAAGACTTATCGGCAAGGTTTTTTCTGGCCCACAGCTGTGTCCGATGCTGATAAAATTGTGCGAACATGTGAGGGTTGTCAATTTTTTGCCCGACAAACTCATCTACCGGCTCAGGAGCTGCAAACCATCCCGTTGTCTTGGCCGTTCGCGGTTTTGGGGCTCGACATGGTTGGCCCGTTTAAAAAGGCTGTCGGTGGTTATACTCATCTCTTTATAGCTGTTGATAAATTCTCCAAGTGGATCAAAGCTAAACCGGTCATTACAATCACAACAGACAAAGCTAGAGATTTCTTCATCAACATTGTGCACCGGTTCGGGGTACCCAATCGGATCATCACTGATAATGGCACTCAATTCACAGACGGAGTATTTAAAGATTTCTGTGAGGACTTCGGCATCAAAATTTGTTATGCCTCCGTAGCGCATCCCATGAGCAACGGACAAGTCGAACGTACCAATGGTATGGTACTTCAAGGAATAAAAGCGCGAGTTTTCGACCGACAGCATCCCTATGCCGGCAAGTGGGTAGAACAGCTGCCGTCCGTACTTTGGTCCCTGCGCACCACTCCCAGTCGGGCAACGGACCAGTCACTGTTTTTCCTGGTCTATGGAGCGGAAGCAATGTTGCCAAGTGAGGTGGAATTTGAATCTCTACGATTTCGTAACTTCAGCGAGGAGCGCTATGGAGAAGACCGAGTAGATGACCTCAACCGACTAGAAGAAGCCCGTGAAGCAGCCTTAATTCAGTCGGCTCGGTACTTGCAAGGGATGCGCCGTTATCACAATCGCAATGTTCGATCACGAGCTTTTTTAGTCGGCGACTTGGTTTTGGGAAAAATTCAGACTACACGGGATCGGCACAAGTTATCTCCCTCGTGGGAAGGACCATTCATAATTTCCGAAGTCACTCGGCCAGGTTCTTACCGACTCAAGCTTGAAGACGGTACTCATATCGACAACTCTTGGAATATTGAACATCTTTATCGTTTTTATGCTTAG
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| CDS seq | ATGGAGTATTGGACCATGCATTTTGACGGGTCGAAGAGGCTTTCAGGCACTGCAGCGGGTTGTTCTAATTTCCCCTACTGGAGAAAGACTGAGCTACAATACGAGGCGCTTCTTCACGGACTAAGGATTGCAATCTCTTTGGGAATTCGGCGTCTGATAGTTCGTGGAGATTTTCAGTTGGTTGTTAATCAAGTCATGAAAGAGTGGTCCTGCCTTGATGATAACACGACCGCCTACCGGCAGGAGGTACGCAAGTTGGAAGACAAATTCGATGGACTTGAGCTCACCCATGTTCTTCGACATAATAATGAGGCAACCGACAGACTGGCTAATTTTGGTTCAAAACGTGAAGCAGCTCCTTCCGACGTGTTTGTTGAACATCTCTACGAACCAACCGTACCAAGGAAAGAAACAATTGAGGCCACGGACACTCAAGACGTAAGTATGATTGAAGCCGACTGGAGAGAGCCCCTCATAAGATTTCTGACCAAACAAGAACTCCCTCAAGATAAAGATGAAGCCGAGCGGGTCTCCAGGCGCAGCAGACTCTATATCATTCATGAGACCGAGCTGTACAAGAAAAGTCCATCGGGAATCCTGCAACGCTGTGTGTCTTTGGAGGAGGGGAGACAATTGCTAAAGGACATGCATTCAGGCATCTGTGGTAATCACGCTGCTGCACGAACCATCGTAGGCAAGACTTATCGGCAAGGTTTTTTCTGGCCCACAGCTGTGTCCGATGCTGATAAAATTGTGCGAACATGTGAGGGTTGTCAATTTTTTGCCCGACAAACTCATCTACCGGCTCAGGAGCTGCAAACCATCCCGTTGTCTTGGCCGTTCGCGGTTTTGGGGCTCGACATGGTTGGCCCGTTTAAAAAGGCTGTCGGTGGTTATACTCATCTCTTTATAGCTGTTGATAAATTCTCCAAGTGGATCAAAGCTAAACCGGTCATTACAATCACAACAGACAAAGCTAGAGATTTCTTCATCAACATTGTGCACCGGTTCGGGGTACCCAATCGGATCATCACTGATAATGGCACTCAATTCACAGACGGAGTATTTAAAGATTTCTGTGAGGACTTCGGCATCAAAATTTGTTATGCCTCCGTAGCGCATCCCATGAGCAACGGACAAGTCGAACGTACCAATGGTATGGTACTTCAAGGAATAAAAGCGCGAGTTTTCGACCGACAGCATCCCTATGCCGGCAAGTGGGTAGAACAGCTGCCGTCCGTACTTTGGTCCCTGCGCACCACTCCCAGTCGGGCAACGGACCAGTCACTGTTTTTCCTGGTCTATGGAGCGGAAGCAATGTTGCCAAGTGAGGTGGAATTTGAATCTCTACGATTTCGTAACTTCAGCGAGGAGCGCTATGGAGAAGACCGAGTAGATGACCTCAACCGACTAGAAGAAGCCCGTGAAGCAGCCTTAATTCAGTCGGCTCGGTACTTGCAAGGGATGCGCCGTTATCACAATCGCAATGTTCGATCACGAGCTTTTTTAGTCGGCGACTTGGTTTTGGGAAAAATTCAGACTACACGGGATCGGCACAAGTTATCTCCCTCGTGGGAAGGACCATTCATAATTTCCGAAGTCACTCGGCCAGGTTCTTACCGACTCAAGCTTGAAGACGGTACTCATATCGACAACTCTTGGAATATTGAACATCTTTATCGTTTTTATGCTTAG
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| Protein seq | MEYWTMHFDGSKRLSGTAAGCSNFPYWRKTELQYEALLHGLRIAISLGIRRLIVRGDFQLVVNQVMKEWSCLDDNTTAYRQEVRKLEDKFDGLELTHVLRHNNEATDRLANFGSKREAAPSDVFVEHLYEPTVPRKETIEATDTQDVSMIEADWREPLIRFLTKQELPQDKDEAERVSRRSRLYIIHETELYKKSPSGILQRCVSLEEGRQLLKDMHSGICGNHAAARTIVGKTYRQGFFWPTAVSDADKIVRTCEGCQFFARQTHLPAQELQTIPLSWPFAVLGLDMVGPFKKAVGGYTHLFIAVDKFSKWIKAKPVITITTDKARDFFINIVHRFGVPNRIITDNGTQFTDGVFKDFCEDFGIKICYASVAHPMSNGQVERTNGMVLQGIKARVFDRQHPYAGKWVEQLPSVLWSLRTTPSRATDQSLFFLVYGAEAMLPSEVEFESLRFRNFSEERYGEDRVDDLNRLEEAREAALIQSARYLQGMRRYHNRNVRSRAFLVGDLVLGKIQTTRDRHKLSPSWEGPFIISEVTRPGSYRLKLEDGTHIDNSWNIEHLYRFYA |
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| Function | Transposon Tf2-11 polyprotein [UniProtKB/Swiss-Prot:Q9UR07] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g28330 | LOC_Os12g28330.1 | Chr12 | 16754661 | 16756395 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGTATTGGACCATGCATTTTGACGGGTCGAAGAGGCTTTCAGGCACTGCAGCGGGTTGTTCTAATTTCCCCTACTGGAGAAAGACTGAGCTACAATACGAGGCGCTTCTTCACGGACTAAGGATTGCAATCTCTTTGGGAATTCGGCGTCTGATAGTTCGTGGAGATTTTCAGTTGGTTGTTAATCAAGTCATGAAAGAGTGGTCCTGCCTTGATGATAACACGACCGCCTACCGGCAGGAGGTACGCAAGTTGGAAGACAAATTCGATGGACTTGAGCTCACCCATGTTCTTCGACATAATAATGAGGCAACCGACAGACTGGCTAATTTTGGTTCAAAACGTGAAGCAGCTCCTTCCGACGTGTTTGTTGAACATCTCTACGAACCAACCGTACCAAGGAAAGAAACAATTGAGGCCACGGACACTCAAGACGTAAGTATGATTGAAGCCGACTGGAGAGAGCCCCTCATAAGATTTCTGACCAAACAAGAACTCCCTCAAGATAAAGATGAAGCCGAGCGGGTCTCCAGGCGCAGCAGACTCTATATCATTCATGAGACCGAGCTGTACAAGAAAAGTCCATCGGGAATCCTGCAACGCTGTGTGTCTTTGGAGGAGGGGAGACAATTGCTAAAGGACATGCATTCAGGCATCTGTGGTAATCACGCTGCTGCACGAACCATCGTAGGCAAGACTTATCGGCAAGGTTTTTTCTGGCCCACAGCTGTGTCCGATGCTGATAAAATTGTGCGAACATGTGAGGGTTGTCAATTTTTTGCCCGACAAACTCATCTACCGGCTCAGGAGCTGCAAACCATCCCGTTGTCTTGGCCGTTCGCGGTTTTGGGGCTCGACATGGTTGGCCCGTTTAAAAAGGCTGTCGGTGGTTATACTCATCTCTTTATAGCTGTTGATAAATTCTCCAAGTGGATCAAAGCTAAACCGGTCATTACAATCACAACAGACAAAGCTAGAGATTTCTTCATCAACATTGTGCACCGGTTCGGGGTACCCAATCGGATCATCACTGATAATGGCACTCAATTCACAGACGGAGTATTTAAAGATTTCTGTGAGGACTTCGGCATCAAAATTTGTTATGCCTCCGTAGCGCATCCCATGAGCAACGGACAAGTCGAACGTACCAATGGTATGGTACTTCAAGGAATAAAAGCGCGAGTTTTCGACCGACAGCATCCCTATGCCGGCAAGTGGGTAGAACAGCTGCCGTCCGTACTTTGGTCCCTGCGCACCACTCCCAGTCGGGCAACGGACCAGTCACTGTTTTTCCTGGTCTATGGAGCGGAAGCAATGTTGCCAAGTGAGGTGGAATTTGAATCTCTACGATTTCGTAACTTCAGCGAGGAGCGCTATGGAGAAGACCGAGTAGATGACCTCAACCGACTAGAAGAAGCCCGTGAAGCAGCCTTAATTCAGTCGGCTCGGTACTTGCAAGGGATGCGCCGTTATCACAATCGCAATGTTCGATCACGAGCTTTTTTAGTCGGCGACTTGGTTTTGGGAAAAATTCAGACTACACGGGATCGGCACAAGTTATCTCCCTCGTGGGAAGGACCATTCATAATTTCCGAAGTCACTCGGCCAGGTTCTTACCGACTCAAGCTTGAAGACGGTACTCATATCGACAACTCTTGGAATATTGAACATCTTTATCGTTTTTATGCTTAG
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| Protein seq | MEYWTMHFDGSKRLSGTAAGCSNFPYWRKTELQYEALLHGLRIAISLGIRRLIVRGDFQLVVNQVMKEWSCLDDNTTAYRQEVRKLEDKFDGLELTHVLRHNNEATDRLANFGSKREAAPSDVFVEHLYEPTVPRKETIEATDTQDVSMIEADWREPLIRFLTKQELPQDKDEAERVSRRSRLYIIHETELYKKSPSGILQRCVSLEEGRQLLKDMHSGICGNHAAARTIVGKTYRQGFFWPTAVSDADKIVRTCEGCQFFARQTHLPAQELQTIPLSWPFAVLGLDMVGPFKKAVGGYTHLFIAVDKFSKWIKAKPVITITTDKARDFFINIVHRFGVPNRIITDNGTQFTDGVFKDFCEDFGIKICYASVAHPMSNGQVERTNGMVLQGIKARVFDRQHPYAGKWVEQLPSVLWSLRTTPSRATDQSLFFLVYGAEAMLPSEVEFESLRFRNFSEERYGEDRVDDLNRLEEAREAALIQSARYLQGMRRYHNRNVRSRAFLVGDLVLGKIQTTRDRHKLSPSWEGPFIISEVTRPGSYRLKLEDGTHIDNSWNIEHLYRFYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g32870 | SBH | 0.055829 | 0.057133 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0244600 | SBH | 0 | 0.0098515 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0135500 | SBH | 0.0029665 | 0.0098125 | 0.0099665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
