Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g27350 | OGI:12044280 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:16078545-16082055 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAATTTCTCACTCCAGTCTCCTTCGCGAATACCGGCACTTGCACGCATACCTCGTGAAGCCCGTTGCGAAGATCTCTCCCACACGATGTCCATCCACCGCGTGCCATCTCGTATCCAACTTCGTCACCCGGTATCTTTGACCATCTGGACCTCAACTCCTCCCTGAGTTTAGTCCCGATCCACACCGTTGACCGAAGTTGACCTCCAAGAATCCTGACTCTAGTCACCTTCTCACATGGTATCCCTACCGCACTAGACCTCTGTTTCTCCCTGAACATAGTCCCAGTCCTCACCATTGACTAAGGCTGACCTCAAGTCACCTGCACACAATCAGACAAAACAACCGTTTCTGGGCACAGATATCACAACCTGACCCACATTAGTCATACGCACTCACACCAACATCCACACATACTTTCAAACCAATTCGTTGATTAAATCATTTGCATAGCCAATTGTTCATCACAAATATTAATCATGACAATGATTTCACACAGAATGTGTCGCCTGCAAGGTTTATCCTCTGTTTTGTCAACAACCGGATGTCTTGGAATGGCGTGCATTTGTTGGCAGGCACTATGATCGGCGTGCATCAACGCATGATCTGGTGTATCTGGTGAAGGCTAGTACATGCCTAACTCTGTTGTCGCGCAAAATGTTAAGGAATTCCTATAGCGTGTTTTGGATTTAGTAGTAATTTTGCGTTGATACACTGACATGTGACTGTGCCACAAACTATAGATACAGAAATGGATTGTTGGCGAAACAATGTGCGTAACAATAAATAGAACACAATATTACCAATTGGCTGAAAAACAAACTACTCCCTCCGTTTCACAATGTAAGTCATTGTAGCATTTTTCACGTTCATATTGAATTTAATCAATCAATAATTTTCTGACTGCACGCAAGCTAGTTGAATAACAAAGATATGTTTTGCTGTATGTGGTGCAGGCATACATCTTTATCCTTTCAGTTTTTTTCTTTTTTTTTTGCGATGATCTTTATACTTTTAGACCCTCTGTGCAAGAATAAAAGGCACCCACAATTTTAGATAAATCAACAGTTGTAGACTTTGACTAATAATTACACAAACAATATATATGTTTATTGATATTCATATGACATCATTATATTTGTATTTGGAAGTATTCTCATATGATGTCAATTTTATAGGCTGTCAAATAAACTTATGCGTCTTACATTTTGGGACGGATGGAGTATTCATTTAACCAAGCAGCCATCTCCTCTTTGAATATATCCATTGCAGGCCGTGGCAACAACATGGAGATGACGATTGACTTCTCATTTTTTTCATTCTTGAACCTGAATTGGTAACTTGTCGTATCTGGTAGATTAACAGTTGGTATACCGCCCCCAATTCGCTTAGCACATCCAATATCTAAAGTGTCCTGCCCAATCCATTTTATATCGCATGTTTCAAATATTCTCTGTACTTTGATATACGGTTTCTCATACCATAATGGCATCACATCCACCATCAATTGCATATTCTCTTCTGTCCTTATCTTGTGTTTAGCCTTGCGGACAAGTTCAATTGTGTGTTCAAGTGGGTTTGTGCACAACTCTTTGACTGTTGTCTCAACTATAGGGTACATTAGCCCATTGCCATAGTATCCCAAAGGAAGTTTTCTCCATCTCCCCCGCGCATTTATGATTATCTTTAAGAGTACATTTTGCCAAGGCTTATAGCCTAGTGCCACGGTGCGGCACCGCCACAAAACTGCAGTTAGTAACTCAAAACTTGTGATTGTTTTTGTGAGATTCAAAGGGACATTACGCCATAGGTACGACATCTGTTTTTCAGAGATGGTGAAGTATTCAGAAACCATATTTTCGGTGGGCATAGTCACCATAATGTCATCACAAGTGGCGCTCTCCAGTTCATCAAATAATGTTTGGTGTTCTTCAATGATGTGGGGTGATAAACTTGTTGCCACAAAGAGCTCCCTGTCCCAAACAGGCAGTACCGTTGGCTTTGCCTCACCACGTGCTATATCAAATATTGCTTTTAATAACTGAAATATGCCGGATCCATCAGCTATGCAATGACAATGGTAGGTTCCAAGGACAAATCCACCGCATTTGAGTTGAGTGATCTAGCAAAGAAAAAAAATTCTAATTAAAAAGATAGAAAGAAGATAATGACTTTGTATTAGTTTAAATGATTCTAAACTAGATATAACTCTATTATTACAACAATACGTGCTAGAAACTATTAAGAAGGCGACTCATGCTACATAGGTATTATAATATTAAAAATGAATTAACTTAATTAGGAAGGAATGTGGAGGGAGGAAGAGAAGAGAGAAGGTGGTGGGGCCATAAAAATAAGAAAATATCTGAGTTACAGTAAATCGAAGATATCTCTATTGTACGGATTAACTGTAGTGTTTAGTGATTAGTGTAGATGACATGGCCACCGGTAATAGGCAGCAGTGGGCTCTCTTATTAACCTTCTGTAATCCACCTGACCCATTTCTCGAACATCCATATATAAATGCAAGTAACCGTTTCGATTTTTCTTTTTGACATTCAGGTAATCGTTTAATGAAGTTACAGCACACGTGTATGTTGTTTGTACCGTGTATTTACAGTGCAAAAGTGTTCTTTTTACATTGTAACTTTTAGCTAGGTTTTTAATTAAGGTGCAAGTGATGAAGTGAATAAAAATTTTTAGATTAAGGCCAAAGTGCACACTGATAAACACATGCAGGTCGTTCAAATTATGACGTCTAGATTGTAACGCTGGATTTAATCCAACAGCTAGCATTTCCATTTTTGTATACCGGCGGGGGGCGCGGCCATATGGTTCCGTTTTCTGATATATCTATTTGTCTTTGTTGGCACATTATGTCACCCTTGGAATTAAGTAGTTAATTCTTGGTCTCAAACTGTGTGGCCTTAATCTTAATATATATCAGGAAAAAAAAATAGCGAGAAACCTTGATTTGAGGGGTTTATGCATCAAAGAGACAGAGATAGGTTTATTTTGTGACTTGTGAGGAGTGACCATCCAACACATGCTGGGTTTTTTACCTGCATGAAGAACAATGGCCTCCCAACGATGACTTTGGCATCTCCAACATCGCAAAGGAACTCATCAGATCCACGGAAAAGCGGCATCGGCGGCTCGCCCATGTCCTCGATCCGAACGTCCGCCTCCGCCTCCACGAACACCACCCCTTCGCCGGTGCACTCCACGGAGAGCTTCCCGTTGGGCAGTTCTCGCAGGCGTCCGGCCATCGGGTAGTAGTACACGAGGGCCTCGGCGAGGGCCGCCTTGATGGCGTCCGCCGGGCGGCGGCGGTGATGGTGGTGGCCGTCGTCATCATCGACCGCACGGAAGAACTCGAGGCATGGCTGGATGTAGCGCAGAAACCAGTCGTTGTCTAGGTCGGACAGCGGCTTGGTATCTCTCGGCGTCGCTCGCGCCGGTGCTACCAGCTCCGGATTCCTCCTACGCACCACGAACGAATCCTGCTTCAT
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| CDS seq | ATGAAGCAGGATTCGTTCGTGGTGCGTAGGAGGAATCCGGAGCTGGTAGCACCGGCGCGAGCGACGCCGAGAGATACCAAGCCGCTGTCCGACCTAGACAACGACTGGTTTCTGCGCTACATCCAGCCATGCCTCGAGTTCTTCCGTGCGGTCGATGATGACGACGGCCACCACCATCACCGCCGCCGCCCGGCGGACGCCATCAAGGCGGCCCTCGCCGAGGCCCTCGTGTACTACTACCCGATGGCCGGACGCCTGCGAGAACTGCCCAACGGGAAGCTCTCCGTGGAGTGCACCGGCGAAGGGGTGGTGTTCGTGGAGGCGGAGGCGGACGTTCGGATCGAGGACATGGGCGAGCCGCCGATGCCGCTTTTCCGTGGATCTGATGAGTTCCTTTGCGATGTTGGAGATGCCAAAGTCATCGTTGGGAGGCCATTGTTCTTCATGCAGATCACTCAACTCAAATGCGGTGGATTTGTCCTTGGAACCTACCATTGTCATTGCATAGCTGATGGATCCGGCATATTTCAGTTATTAAAAGCAATATTTGATATAGCACGTGGTGAGGCAAAGCCAACGGTACTGCCTGTTTGGGACAGGGAGCTCTTTGTGGCAACAAGTTTATCACCCCACATCATTGAAGAACACCAAACATTATTTGATGAACTGGAGAGCGCCACTTGTGATGACATTATGGTGACTATGCCCACCGAAAATATGGTTTCTGAATACTTCACCATCTCTGAAAAACAGATGTCGTACCTATGGCGTAATGTCCCTTTGAATCTCACAAAAACAATCACAAGTTTTGAGTTACTAACTGCAGTTTTGTGGCGGTGCCGCACCGTGGCACTAGGCTATAAGCCTTGGCAAAATGTACTCTTAAAGATAATCATAAATGCGCGGGGGAGATGGAGAAAACTTCCTTTGGGATACTATGGCAATGGGCTAATGTACCCTATAGTTGAGACAACAGTCAAAGAGTTGTGCACAAACCCACTTGAACACACAATTGAACTTGTCCGCAAGGCTAAACACAAGATAAGGACAGAAGAGAATATGCAATTGATGGTGGATGTGATGCCATTATGGTATGAGAAACCGTATATCAAAGTACAGAGAATATTTGAAACATGCGATATAAAATGGATTGGGCAGGACACTTTAGATATTGGATGTGCTAAGCGAATTGGGGGCGGTATACCAACTGTTAATCTACCAGATACGACAAGTTACCAATTCAGGTTCAAGAATGAAAAAAATGAGAAGTCAATCGTCATCTCCATGTTGTTGCCACGGCCTGCAATGGATATATTCAAAGAGGAGATGGCTGCTTGGTTAAATGAATACTCCATCCGTCCCAAAATGGAGAAACAGAGGTCTAGTGCGGTAGGGATACCATGTGAGAAGGTGACTAGAGTCAGGATTCTTGGAGGTCAACTTCGGTCAACGGTGTGGATCGGGACTAAACTCAGGGAGGAGTTGAGGTCCAGATGGTCAAAGATACCGGGTGACGAAGTTGGATACGAGATGGCACGCGGTGGATGGACATCGTGTGGGAGAGATCTTCGCAACGGGCTTCACGAGGTATGCGTGCAAGTGCCGGTATTCGCGAAGGAGACTGGAGTGAGAAATTGA
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| Protein seq | MKQDSFVVRRRNPELVAPARATPRDTKPLSDLDNDWFLRYIQPCLEFFRAVDDDDGHHHHRRRPADAIKAALAEALVYYYPMAGRLRELPNGKLSVECTGEGVVFVEAEADVRIEDMGEPPMPLFRGSDEFLCDVGDAKVIVGRPLFFMQITQLKCGGFVLGTYHCHCIADGSGIFQLLKAIFDIARGEAKPTVLPVWDRELFVATSLSPHIIEEHQTLFDELESATCDDIMVTMPTENMVSEYFTISEKQMSYLWRNVPLNLTKTITSFELLTAVLWRCRTVALGYKPWQNVLLKIIINARGRWRKLPLGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPYIKVQRIFETCDIKWIGQDTLDIGCAKRIGGGIPTVNLPDTTSYQFRFKNEKNEKSIVISMLLPRPAMDIFKEEMAAWLNEYSIRPKMEKQRSSAVGIPCEKVTRVRILGGQLRSTVWIGTKLREELRSRWSKIPGDEVGYEMARGGWTSCGRDLRNGLHEVCVQVPVFAKETGVRN |
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| Function | Spermidine hydroxycinnamoyltransferase 2 [UniProtKB/Swiss-Prot:Q0ING3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g27350 | LOC_Os12g27350.1 | Chr12 | 16078545 | 16082055 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGCAGGATTCGTTCGTGGTGCGTAGGAGGAATCCGGAGCTGGTAGCACCGGCGCGAGCGACGCCGAGAGATACCAAGCCGCTGTCCGACCTAGACAACGACTGGTTTCTGCGCTACATCCAGCCATGCCTCGAGTTCTTCCGTGCGGTCGATGATGACGACGGCCACCACCATCACCGCCGCCGCCCGGCGGACGCCATCAAGGCGGCCCTCGCCGAGGCCCTCGTGTACTACTACCCGATGGCCGGACGCCTGCGAGAACTGCCCAACGGGAAGCTCTCCGTGGAGTGCACCGGCGAAGGGGTGGTGTTCGTGGAGGCGGAGGCGGACGTTCGGATCGAGGACATGGGCGAGCCGCCGATGCCGCTTTTCCGTGGATCTGATGAGTTCCTTTGCGATGTTGGAGATGCCAAAGTCATCGTTGGGAGGCCATTGTTCTTCATGCAGATCACTCAACTCAAATGCGGTGGATTTGTCCTTGGAACCTACCATTGTCATTGCATAGCTGATGGATCCGGCATATTTCAGTTATTAAAAGCAATATTTGATATAGCACGTGGTGAGGCAAAGCCAACGGTACTGCCTGTTTGGGACAGGGAGCTCTTTGTGGCAACAAGTTTATCACCCCACATCATTGAAGAACACCAAACATTATTTGATGAACTGGAGAGCGCCACTTGTGATGACATTATGGTGACTATGCCCACCGAAAATATGGTTTCTGAATACTTCACCATCTCTGAAAAACAGATGTCGTACCTATGGCGTAATGTCCCTTTGAATCTCACAAAAACAATCACAAGTTTTGAGTTACTAACTGCAGTTTTGTGGCGGTGCCGCACCGTGGCACTAGGCTATAAGCCTTGGCAAAATGTACTCTTAAAGATAATCATAAATGCGCGGGGGAGATGGAGAAAACTTCCTTTGGGATACTATGGCAATGGGCTAATGTACCCTATAGTTGAGACAACAGTCAAAGAGTTGTGCACAAACCCACTTGAACACACAATTGAACTTGTCCGCAAGGCTAAACACAAGATAAGGACAGAAGAGAATATGCAATTGATGGTGGATGTGATGCCATTATGGTATGAGAAACCGTATATCAAAGTACAGAGAATATTTGAAACATGCGATATAAAATGGATTGGGCAGGACACTTTAGATATTGGATGTGCTAAGCGAATTGGGGGCGGTATACCAACTGTTAATCTACCAGATACGACAAGTTACCAATTCAGGTTCAAGAATGAAAAAAATGAGAAGTCAATCGTCATCTCCATGTTGTTGCCACGGCCTGCAATGGATATATTCAAAGAGGAGATGGCTGCTTGGTTAAATGAATACTCCATCCGTCCCAAAATGGAGAAACAGAGGTCTAGTGCGGTAGGGATACCATGTGAGAAGGTGACTAGAGTCAGGATTCTTGGAGGTCAACTTCGGTCAACGGTGTGGATCGGGACTAAACTCAGGGAGGAGTTGAGGTCCAGATGGTCAAAGATACCGGGTGACGAAGTTGGATACGAGATGGCACGCGGTGGATGGACATCGTGTGGGAGAGATCTTCGCAACGGGCTTCACGAGGTATGCGTGCAAGTGCCGGTATTCGCGAAGGAGACTGGAGTGAGAAATTGA
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| Protein seq | MKQDSFVVRRRNPELVAPARATPRDTKPLSDLDNDWFLRYIQPCLEFFRAVDDDDGHHHHRRRPADAIKAALAEALVYYYPMAGRLRELPNGKLSVECTGEGVVFVEAEADVRIEDMGEPPMPLFRGSDEFLCDVGDAKVIVGRPLFFMQITQLKCGGFVLGTYHCHCIADGSGIFQLLKAIFDIARGEAKPTVLPVWDRELFVATSLSPHIIEEHQTLFDELESATCDDIMVTMPTENMVSEYFTISEKQMSYLWRNVPLNLTKTITSFELLTAVLWRCRTVALGYKPWQNVLLKIIINARGRWRKLPLGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPYIKVQRIFETCDIKWIGQDTLDIGCAKRIGGGIPTVNLPDTTSYQFRFKNEKNEKSIVISMLLPRPAMDIFKEEMAAWLNEYSIRPKMEKQRSSAVGIPCEKVTRVRILGGQLRSTVWIGTKLREELRSRWSKIPGDEVGYEMARGGWTSCGRDLRNGLHEVCVQVPVFAKETGVRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0459100 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0459100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012490 | RBH | 0.0 | 27.844885 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012630 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012510 | RBH | 0.0 | 36.857182 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012230 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011970 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0225300 | RBH | 0.203947 | 0 | 0.018853 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012170 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0251900 | SBH | 0.062015 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012280 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012230 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012000 | SBH | 0.0 | 0.0 | 0.0 |
