Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g17210 | OGI:12026470 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:9848817-9850818 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCAAACTCGCGAGATGGCGTCTGCCCGAGAGGATATCCGACTGGCTGCAGCCACGGCGAGCGAAGGAGAAATACCTGCTACCAAGACTTCAAAAAGTGGAGAAAGCGAAGCCAAGACTAAGAAGATTCCCCTAGATCCCTCTGATCCTACTAAAACTGCTGTAATAGGCGCCGAGTTAGATTGTAAATAGGAAAGCGCGCTCATCACCTTTCTTCAGAACAATAAAGATATCTTTGCGTGGAAACCATCTGATATGCCCGGTATTCCTAGAGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAACAACGACTCCGCCGATTCGCACAAGACAGGAAGGACGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCAAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACTGACCTCAACAAATCTTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTAGTCGACTCGACCGCCGGCTGTGAGCTTCTCAGTTTTTTGGATTGTTACTCGGGGTATCATCAGATCCGACTGAAGGAATCCGACTGCTTGAAGACCTCATTCATCACGCCTTTTGGGGCATACTGCTACGTCACCATGCCGTTCGGACTAAAAAACGCAGGAGCAACTTATCAACGCATGATTCAGAGATGCTTCTCAACACAGATCGGCCGCAACGTTGAAGCCTATGTGGATGATGTAGTCGTCAAGACCAAGCAAAAGGATGATTTGATCTCGGATCTAGAAGAAACCTTCGCGAGCATCCGCGCTTTCAGGATGAAATTAAACCCTGAAAAATACATCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACTGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAGAAGCTGACTGGATGCATGGCGGCGCTCAGCCGATTTGTTTCACGACTTGGCGAGCGGGGGATGCCCTTCTTTAAGCTGCTGAAGAAAACAGATAACTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAGAAACTCCTCACCGAGCCACCAGTCTTAGCCTCACCACACCCGCAGGAGCCGTTGTTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCAGAAGCTGTTATATGGTATTCTAATTACTACCAGGAAGCTATCTCACTACTTTCAAGGTCACTCGGTAACGGTGGTCACATCATTTCCACTCGGTGATATACTGCACAACCGCGAAGCAAACGGACGTATTGCCAAGTGGGCTTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAGTCCCAAGCGTTAGCTGATTTTGTCGCCGAATGGACCGAGTGCCAGGAGGATACCCCCGCGGAGAACATGGAGCACTGGACCATGCATTTTGACGGATCCAAACGACTTTCGGGCATTGGAGCAGGAGTGGTTTTGATTTCCCCAACTGGAGAAAGATTGAGCTATGTGCTTTGGATACATTTTTCGGCGTCCCACAACGTCGCCGAGTATGAGGCCCTTCTTCATGGACTACGGATTGCAATTTCCCTAGGGATAAAGCGTCTGATTGTTCGAGGCGATTCACAGTTGGTTGTCAACCAAGTTATGAAAGAGTGGTCCTGCATTGACGACAATATGATGGCATATCGACAAGAGGTGCGCAAATTGGAAGACAAGTTCGAGGGACTCGAGCTCAGTCACGTTCTTTGACACAACAATGAAGCCGCCGACAGACTTGCCAATTTTGGATCCAA
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| CDS seq | ATGCCCGGTATTCCTAGAGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAACAACGACTCCGCCGATTCGCACAAGACAGGAAGGACGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCAAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACTGACCTCAACAAATCTTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTAGTCGACTCGACCGCCGGCTGTGAGCTTCTCAGTTTTTTGGATTGTTACTCGGGGTATCATCAGATCCGACTGAAGGAATCCGACTGCTTGAAGACCTCATTCATCACGCCTTTTGGGGCATACTGCTACGTCACCATGCCGTTCGGACTAAAAAACGCAGGAGCAACTTATCAACGCATGATTCAGAGATGCTTCTCAACACAGATCGGCCGCAACGTTGAAGCCTATGTGGATGATGTAGTCGTCAAGACCAAGCAAAAGGATGATTTGATCTCGGATCTAGAAGAAACCTTCGCGAGCATCCGCGCTTTCAGGATGAAATTAAACCCTGAAAAATACATCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACTGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAGAAGCTGACTGGATGCATGGCGGCGCTCAGCCGATTTGTTTCACGACTTGGCGAGCGGGGGATGCCCTTCTTTAAGCTGCTGAAGAAAACAGATAACTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAGAAACTCCTCACCGAGCCACCAGTCTTAGCCTCACCACACCCGCAGGAGCCGTTGTTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCAGAAGCTGTTATATGGTATTCTAATTACTACCAGGAAGCTATCTCACTACTTTCAAGGTCACTCGGTAACGGTGGTCACATCATTTCCACTCGGTGATATACTGCACAACCGCGAAGCAAACGGACGTATTGCCAAGTGGGCTTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAGTCCCAAGCGTTAGCTGATTTTGTCGCCGAATGGACCGAGTGCCAGGAGGATACCCCCGCGGAGAACATGGAGCACTGGACCATGCATTTTGACGGATCCAAACGACTTTCGGGCATTGGAGCAGGAGTGGTTTTGATTTCCCCAACTGGAGAAAGATTGAGCTATGTGCTTTGGATACATTTTTCGGCGTCCCACAACGTCGCCGAGTATGAGGCCCTTCTTCATGGACTACGGATTGCAATTTCCCTAGGGATAAAGCGTCTGATTGTTCGAGGCGATTCACAGTTGGTTGTCAACCAAGTTATGAAAGAGTGGTCCTGCATTGACGACAATATGATGGCATATCGACAAGAGGTGCGCAAATTGGAAGACAAGTTCGAGGGACTCGAGCTCAGTCACGTTCTTTGA
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| Protein seq | MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKYIFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAENMEHWTMHFDGSKRLSGIGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVL |
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| Function | Retrovirus-related Pol polyprotein from transposon opus [UniProtKB/Swiss-Prot:Q8I7P9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g17210 | LOC_Os12g17210.1 | Chr12 | 9848817 | 9850818 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCCGGTATTCCTAGAGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAACAACGACTCCGCCGATTCGCACAAGACAGGAAGGACGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCAAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACTGACCTCAACAAATCTTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTAGTCGACTCGACCGCCGGCTGTGAGCTTCTCAGTTTTTTGGATTGTTACTCGGGGTATCATCAGATCCGACTGAAGGAATCCGACTGCTTGAAGACCTCATTCATCACGCCTTTTGGGGCATACTGCTACGTCACCATGCCGTTCGGACTAAAAAACGCAGGAGCAACTTATCAACGCATGATTCAGAGATGCTTCTCAACACAGATCGGCCGCAACGTTGAAGCCTATGTGGATGATGTAGTCGTCAAGACCAAGCAAAAGGATGATTTGATCTCGGATCTAGAAGAAACCTTCGCGAGCATCCGCGCTTTCAGGATGAAATTAAACCCTGAAAAATACATCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACTGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAGAAGCTGACTGGATGCATGGCGGCGCTCAGCCGATTTGTTTCACGACTTGGCGAGCGGGGGATGCCCTTCTTTAAGCTGCTGAAGAAAACAGATAACTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAGAAACTCCTCACCGAGCCACCAGTCTTAGCCTCACCACACCCGCAGGAGCCGTTGTTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTCGTTGAGCGCGAGGAAGAAGGCCATGTCCAAAAAGTCCAGCGACCGATTTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCAGAAGCTGTTATATGGTATTCTAATTACTACCAGGAAGCTATCTCACTACTTTCAAGGTCACTCGGTAACGGTGGTCACATCATTTCCACTCGGTGATATACTGCACAACCGCGAAGCAAACGGACGTATTGCCAAGTGGGCTTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAGTCCCAAGCGTTAGCTGATTTTGTCGCCGAATGGACCGAGTGCCAGGAGGATACCCCCGCGGAGAACATGGAGCACTGGACCATGCATTTTGACGGATCCAAACGACTTTCGGGCATTGGAGCAGGAGTGGTTTTGATTTCCCCAACTGGAGAAAGATTGAGCTATGTGCTTTGGATACATTTTTCGGCGTCCCACAACGTCGCCGAGTATGAGGCCCTTCTTCATGGACTACGGATTGCAATTTCCCTAGGGATAAAGCGTCTGATTGTTCGAGGCGATTCACAGTTGGTTGTCAACCAAGTTATGAAAGAGTGGTCCTGCATTGACGACAATATGATGGCATATCGACAAGAGGTGCGCAAATTGGAAGACAAGTTCGAGGGACTCGAGCTCAGTCACGTTCTTTGA
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| Protein seq | MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKYIFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAENMEHWTMHFDGSKRLSGIGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFEGLELSHVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.463000 | 0.534678 | 0.015345 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g23230 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0135300 | RBH | 0.002281 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0171700 | RBH | 0.0064595 | 0.009008 | 0.000766 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
