Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g17140 | OGI:12026280 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:9809174-9812470 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATCCTTCACAGTTGTTGAGGAGCTCAAGGCTAAGAGTAAGCTCAGCATCGTTCTCACTGAACATGAAGACACAAACATCACATAGCTCGAATAATTTGTCTCCAACCAACTTATTCCATCCAGTTGTGAAGGTTGCTTGCTTATCTTTCGATTTCATTAGTCTCATCGGGTAGGAAACAGTTGATCCGACCACAGTCACAAGCAAATCTTCAATTGGAAGGTGTTCGTTTATGTACTGCTCGCTAAATGGTATGGAGAAGGCCTGAAAAATAAATACATGACAGTTACACTCAGGACAAGTACGGCTGAAGAAATGCAAAAGCGGTGGAATTAAAAGGTCAAACACACCATTTTTCCCTTTTTCAGATTAGTCTTATGTATCTCATACACATACAGTGAAATCTTAGGCAAATTGCTTGCTGCAATGCAGGCAAGTTGGTACTGCATCTTGTGTGTTAAAACAATGTATCTGGATCAAAATGTATTGAAATTTTTCTTTCAAAATATGTCTTTCAAGCTATTCTGTATGATTTCTGTTTCCCTAATTTCAATCCAACTGTAAGATTTTTGTTTCCCTAATTTCAATCCATCATCACCCATCCAAAATATACTGCCCAAACATTGAATAAAAACCACAAATTGCAACGAATAACACAAACCTTTTCGATCGGTCTCCATCCTCTCTCTGCATGTTCTGCCACACCAAGTCGGGATTTTGGACTATTTGCCATCCTCCTGAATGGCGTATTCCCAAATGCCATCTTCCCAAATAACTTTGATGATTTGCCATCCGGGTCCACTGATTTGTTTCTATTTTACCACTATTCACCTCAAACTCAGCAAATTGAGTAGAAAATGACCTCACTACCCCTCCCATTTCTCCTTTCCCTTCTTCCTTCTTGCTCTCAGGCATTAGTGATGTGGCGGAGCAGTCTTCGGCGTCTTCTGCGGCGGTGGCATCGCTCATGCTGCTGCTACCCTACAAGAGGTTCAACAGCCCATACATCACACAAAATCGAGCCTGACACCACCCGTCCTGTGCCGATGATCGATCTCGCCAGTGGAGTGGCACCCGCGCACATGGATAGACACCCAGAGAAACTTCTGGAACACAGCTGCCATTAGTGCCAACCGGATGCGCATCCCTGTCCACCACGAGTCGAGCCAAAGAAATAATGTCGGCTATGAAGCGACTCGACAAACTTGATGGCTGGTGGTGCATTAACTGAACAGGTCAGTAATTGAAGCCGGTGAGCATGATCTCCCCAAGGTAGCACATGAATAGGACGTCTACGGGACAGCTTTCCTACGCTGACGTCGGCGTCGTTGTCCTTCTGATGGCCGTGGCAGCTCCATTCATCGGTGAACCTTTCTGACACGCATGTCATGTTGTACTCGGAGGTAATGAGCGGGATGTTGGCGAGGTTGAATGCCTTGGAATGAGGGAATTGGCAATGCACAGGATGCCACGAGAAGGCCAGTCAGCTGAACACGCCGGTGTTGCGTATGGAAGGAAGAAGAAAGAAGGAAGTGGATAGATATGAGGGGCAATCAACTCATTTTCTACTCAATTTGCTGAGTTGGTGGTGAAAAGTGGCAAATTAGAAACAAAACAGTAGACCGAATGGTAAATCGTCAAAGTCATTTGGGAAGATGGCATTTGGGAATACGCCATTCAAGAGGATGGCAAATAGTCCAAAATCCCCACCAAGTCCGAATCGCTGCCGCAAACATCGCCGACCTCACGACGAATGGCCGCTACAACCATCGCCGAGTTCTCCGGCGAATGGCATCCTGCCAATGCCCCGCCGTCGCATCGAGGCTGCCTCGCACCAAGGCCGCCGTGCCCGTCGTCACAGCAAGGCCGCCGCGCCCGTCGTCGCATCAAGGCCGCCGCGCCCGCCGTCGCCCCAAGGCCGCCTCGCCCGCTGTCGCCCCAAGGCCGCCTTGCTTGCCGTCGCCGATGAAACTCCGATAGCCGGCCTTCCGCCGTTCAACTCGACCAATCCGCCTTGCCGTTCAACACCGCTGTACGGTTCCCTCGCCGATTTAGGGTTAAGCTTTCCCCCTCACACGATAACAGATGACGCACGCGAAATTACAAAGTTACCCTCCCACCCACGGTACCGCGTCAAACAGAAGGAGCGGTACCATGAGGTACCGACGAATCCTGTCCATTAGATGAAGCCAGATCAACGGTCATGATTTGGTACTGCATAGCCTCAAGGACAGTAAAAAAGCTCTCCAAATTTAATTTGTGCTGTCAGATAGGCGTTAAGATTCACGATTCACGTGTGGGGGAGGAAATGAAAATGTATCCGCGCATGGGATGAGGATCGACTCATCAACCGAAGCTAGTGGTTGTGCTAGATCGTGATTTTATTTGTAATATATTAGACCTATTTCTGTATTTGAAGAGAAAAAAAACTATGTTTGAAATCTCTATTCGCTGTTATGTTCCACAAAAATTAGAAAACATAAAAATTTGTGTAACTTTTATCTTTCAGGAATCCTCGAAGATGACTGATGAGGTTCTGCTCATCTTCAGATACATCTCCATTGCTCCCAAGTCCTTTAAGCATATCAACCAAGACCTTCCTTATATTAGGGGTACGTGAAATAGACACAAAAGTTATACACTTAAAATCCCCTTGTATTGTCTTGTACAATTCATTAGCTAGAGTTGTCTTTCCAAGACCACCCAACCAACAATCGAAACCACTTTGCGTTGTTCTGATGACCAATCTTTGTGCATGATCCACTTAACGATCTTCTCCCTTGGACCATCAATCCCTACGAGCCTCTCCACCTCCTCATACAATGCCAGCAGACGGGGATCAATTTCCACCATACTTGGCTCGGAGATGAAATCATCGATCTGATACCGCTTGCGACGTTGGTCCTCCTCCATAACCCGATTCTTCAGTTCTTGGATACACTCTGTGATCTGGTGTTTTCCCCATAGCTTCTTTATCTTGCTTCCTATCTTGCGAACAAAGTTGGCATTGGCATCGCCACAACTCAACTTGTGGATGAAGAGGTCGATGCAATCCTCAATATCATAAGCTAGCTCGAGCATGTTGTTCCTCCACTCCATGGTCGGCCCATCAAGCTTGTCCTCCTTGTTCGATAGATGCTCAAGCAAGACACTGATGCTGCTGAGCTCATTCCTCAAAAAGATGATATCCTTCTTCACACTTTTGAGCAGCTTGTACTCTCCCTCGATCAAGGAGGAAAGCTTGGTTAGAAGGGGATTCAGCACCCCAACTGAAGCACTCACGATTGCTCCTGCCAT
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| CDS seq | ATGGCAGGAGCAATCGTGAGTGCTTCAGTTGGGGTGCTGAATCCCCTTCTAACCAAGCTTTCCTCCTTGATCGAGGGAGAGTACAAGCTGCTCAAAAGTGTGAAGAAGGATATCATCTTTTTGAGGAATGAGCTCAGCAGCATCAGTGTCTTGCTTGAGCATCTATCGAACAAGGAGGACAAGCTTGATGGGCCGACCATGGAGTGGAGGAACAACATGCTCGAGCTAGCTTATGATATTGAGGATTGCATCGACCTCTTCATCCACAAGTTGAGTTGTGGCGATGCCAATGCCAACTTTGTTCGCAAGATAGGAAGCAAGATAAAGAAGCTATGGGGAAAACACCAGATCACAGAGTGTATCCAAGAACTGAAGAATCGGGTTATGGAGGAGGACCAACGTCGCAAGCGGTATCAGATCGATGATTTCATCTCCGAGCCAAGTATGGTGGAAATTGATCCCCGTCTGCTGGCATTGTATGAGGAGGTGGAGAGGCTCGTAGGGATTGATGGTCCAAGGGAGAAGATCGTTAAGTGGATCATGCACAAAGATTGGTCATCAGAACAACGCAAAGTGGTTTCGATTGTTGGTTGGGTGGGTAGCAGCAGCATGAGCGATGCCACCGCCGCAGAAGACGCCGAAGACTGCTCCGCCACATCACTAATGCCTGAGAGCAAGAAGGAAGAAGGGAAAGGAGAAATGGGAGGGGTAGTGAGGTCATTTTCTACTCAATTTGCTGAGTTTGAGGCCTTCTCCATACCATTTAGCGAGCAGTACATAAACGAACACCTTCCAATTGAAGATTTGCTTGTGACTGTGGTCGGATCAACTGTTTCCTACCCGATGAGACTAATGAAATCGAAAGATAAGCAAGCAACCTTCACAACTGGATGGAATAAGTTGGTTGGAGACAAATTATTCGAGCTATGTGATGTTTGTGTCTTCATGTTCAGTGAGAACGATGCTGAGCTTACTCTTAGCCTTGAGCTCCTCAACAACTGTGAAGGATGA
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| Protein seq | MAGAIVSASVGVLNPLLTKLSSLIEGEYKLLKSVKKDIIFLRNELSSISVLLEHLSNKEDKLDGPTMEWRNNMLELAYDIEDCIDLFIHKLSCGDANANFVRKIGSKIKKLWGKHQITECIQELKNRVMEEDQRRKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKIVKWIMHKDWSSEQRKVVSIVGWVGSSSMSDATAAEDAEDCSATSLMPESKKEEGKGEMGGVVRSFSTQFAEFEAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCEG |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g17140 | LOC_Os12g17140.1 | Chr12 | 9809174 | 9812470 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGGAGCAATCGTGAGTGCTTCAGTTGGGGTGCTGAATCCCCTTCTAACCAAGCTTTCCTCCTTGATCGAGGGAGAGTACAAGCTGCTCAAAAGTGTGAAGAAGGATATCATCTTTTTGAGGAATGAGCTCAGCAGCATCAGTGTCTTGCTTGAGCATCTATCGAACAAGGAGGACAAGCTTGATGGGCCGACCATGGAGTGGAGGAACAACATGCTCGAGCTAGCTTATGATATTGAGGATTGCATCGACCTCTTCATCCACAAGTTGAGTTGTGGCGATGCCAATGCCAACTTTGTTCGCAAGATAGGAAGCAAGATAAAGAAGCTATGGGGAAAACACCAGATCACAGAGTGTATCCAAGAACTGAAGAATCGGGTTATGGAGGAGGACCAACGTCGCAAGCGGTATCAGATCGATGATTTCATCTCCGAGCCAAGTATGGTGGAAATTGATCCCCGTCTGCTGGCATTGTATGAGGAGGTGGAGAGGCTCGTAGGGATTGATGGTCCAAGGGAGAAGATCGTTAAGTGGATCATGCACAAAGATTGGTCATCAGAACAACGCAAAGTGGTTTCGATTGTTGGTTGGGTGGGTAGCAGCAGCATGAGCGATGCCACCGCCGCAGAAGACGCCGAAGACTGCTCCGCCACATCACTAATGCCTGAGAGCAAGAAGGAAGAAGGGAAAGGAGAAATGGGAGGGGTAGTGAGGTCATTTTCTACTCAATTTGCTGAGTTTGAGGCCTTCTCCATACCATTTAGCGAGCAGTACATAAACGAACACCTTCCAATTGAAGATTTGCTTGTGACTGTGGTCGGATCAACTGTTTCCTACCCGATGAGACTAATGAAATCGAAAGATAAGCAAGCAACCTTCACAACTGGATGGAATAAGTTGGTTGGAGACAAATTATTCGAGCTATGTGATGTTTGTGTCTTCATGTTCAGTGAGAACGATGCTGAGCTTACTCTTAGCCTTGAGCTCCTCAACAACTGTGAAGGATGA
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| Protein seq | MAGAIVSASVGVLNPLLTKLSSLIEGEYKLLKSVKKDIIFLRNELSSISVLLEHLSNKEDKLDGPTMEWRNNMLELAYDIEDCIDLFIHKLSCGDANANFVRKIGSKIKKLWGKHQITECIQELKNRVMEEDQRRKRYQIDDFISEPSMVEIDPRLLALYEEVERLVGIDGPREKIVKWIMHKDWSSEQRKVVSIVGWVGSSSMSDATAAEDAEDCSATSLMPESKKEEGKGEMGGVVRSFSTQFAEFEAFSIPFSEQYINEHLPIEDLLVTVVGSTVSYPMRLMKSKDKQATFTTGWNKLVGDKLFELCDVCVFMFSENDAELTLSLELLNNCEG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0270300 | SBH | 0.617404 | 1.269819 | 4.729718 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0270300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008970 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009070 | SBH | 0.000000 | 4.725021 | 1.666354 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009050 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008890 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008710 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0134400 | RBH | 0.0217355 | 0.039279 | 0.211674 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008760 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0149700 | SBH | 0 | 0 | 0.0456725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008670 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008870 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008850 | SBH | 0.0 | 0.0 | 0.081038 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008820 | SBH | 0.333200 | 1.206500 | 0.120301 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008680 | SBH | 0.0 | 0.0 | 0.0 |
