Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g11420 | OGI:12015540 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:6164435-6164653 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAGGCGGCGGACATGGTGCATATTCTGGGCTTCCGCACGGGGGAATCGGGCATCCCTCTGGTGATGGCCGTGGGACGCACACCATGTTGACATTGGCGCCTCTCCCGGCGGCAGAGGCCATGACCATCAACAGCGTCAGGACGAGGAGGAGGAGGACGGGCACCACCAGCTGCCTGCCGCCGCCGGTGCTCGCCGTCGACGTCCAGCCGCCGGCCAT |
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| CDS seq | ATGGCCGGCGGCTGGACGTCGACGGCGAGCACCGGCGGCGGCAGGCAGCTGGTGGTGCCCGTCCTCCTCCTCCTCGTCCTGACGCTGTTGATGGTCATGGCCTCTGCCGCCGGGAGAGGCGCCAATGTCAACATGGTGTGCGTCCCACGGCCATCACCAGAGGGATGCCCGATTCCCCCGTGCGGAAGCCCAGAATATGCACCATGTCCGCCGCCTTAA |
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| Protein seq | MAGGWTSTASTGGGRQLVVPVLLLLVLTLLMVMASAAGRGANVNMVCVPRPSPEGCPIPPCGSPEYAPCPPP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g11420 | LOC_Os12g11420.1 | Chr12 | 6164435 | 6164653 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCGGCGGCTGGACGTCGACGGCGAGCACCGGCGGCGGCAGGCAGCTGGTGGTGCCCGTCCTCCTCCTCCTCGTCCTGACGCTGTTGATGGTCATGGCCTCTGCCGCCGGGAGAGGCGCCAATGTCAACATGGTGTGCGTCCCACGGCCATCACCAGAGGGATGCCCGATTCCCCCGTGCGGAAGCCCAGAATATGCACCATGTCCGCCGCCTTAA
More
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| Protein seq | MAGGWTSTASTGGGRQLVVPVLLLLVLTLLMVMASAAGRGANVNMVCVPRPSPEGCPIPPCGSPEYAPCPPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.154447 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11430 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006940 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007030 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007030 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006880 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006920 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006820 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006880 | RBH | 0.0 | 0.0 | 0.0 |
