Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g10330 | OGI:12014370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:5469044-5471369 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAACACAAATTATCACACAAACAGAAATATTACACAGTCATTTCAAGCGATACAGACTACAAATCCCGAACAAGCGATACAATGATACAGAGAAGCAAAACAGTTTCCTCCAGGGACAACAGTAGTTGCAAAAGCAAATGGACACCACTATTACAGATTGCAGATGGCAACACATTTAGCCATTTATGTGGACAACATACAGAAATAATATGGTTTATCATACAGCATCACTTTTTTTTAGCCTTACTTCTTCAATGATCCCAGTTTATCCCCTAAGGCAGTGCTGCCTTATGTGTTTTAAAGCATTGAGATCTTGACGTGACGAAGGTGCATCAGACTAGAAAGTCTGTCAGGTAAATGGCACATCTTGAACAGAGAACATTCTAACAGACGCAAGGATTTTGAGTTCTTCACGACCTCTGCCATTGCGTATACCACGTCCTCCTCGACATTGCCACAATCTTCAATGATGACTGTGCGCAGCTTCGTCAAACGGAGCAATTCCTTCACATCAACAACAGTGAAATTGTTAATACCTGCAATACTAATGTGTCGAACCGAACTCTTCACGTTTCTCAAGTCTGCGGCTTCAGTTAACCTCTTACATTCGCCCTGTGAGATATATGTTGCAAAATCATGCATTGTGTCATTCATAACATAGTATGCAGGTTCTTCGTTTTCTCCACCAAAGCGATCAAGGAACAAATTTGCAGTCAATTGAGCCAAGTATAACTCTCCGTCCTTTTTCCCGAATTGAGGAAATATCAATCCTGACCAAATCCAAGCCCTCACCAACTCCTCCTTTCTGAATGGATGATTTTTTGGAAATAAGCTGCAATAGCGAAAGCAACTCTGCAACTCTGCCGAGAGCCTGTAGTAGCTTATTTTCAAGACATCCATAATATTTGGTACTGCTGCTCCAAAATTATCCATACCGTGAAGAAACCTTCGCCAGGACTCTAATGATCTTACTCGTAACAGATAAGCAGCACTTTTTATTGCCGCGGGAGTCCCTCCAAGTTTCTTTACAATCTTAGCGCCGATTGATTGGAGTTCCGCATAATCTTCTGATCTTTCATTCAGATCAGCCAAAGCAAGTTGGCAGAAGATCTGTAGATTTCCATTTTCTTCAAGTTCATGCAACCTAAGGTGCTGATCTTCACATCCTGTGACACTCTCAACTAGAGTTGCCACTGATTGCGTTCTGGTTGTCAATAAAATTTTGATTCTAGTGTTGATGCCCCTCAGAACTGAAAATAGTTTCTCCCATTCATGTAGATTTTCTTCCCAGACATCATCCAAAACGAGTAGAAAAGCTTTAGTGGAATTTATTTTATCTTGGAGAATATGCTGCATGTTTTCCAAAGAATCGGATGAACATGGCGAACGTGTAACACACTGTACTATTTCACGCATAATTCTTCCTACATCAAAGCTTGAAGTTACACATAACCATGCAACCATATCAAAATGATCTCTGACCCTTGGATCATTATATACCAGTTGTGCCAATGTAGTCTTCCCCACGCCACCGTGGCCAACTATGGACATAACTGAGACATGATGATTATTTGGACTAACCTGAGTTTCAGCATCATCATCATCCAAGGGATCGATCAGCCATCGGACTATCACATCAGTCTCCTTCTCCCGGCCCAACACTCTATCCTTAAAGCCAGCCGTCATGAAATATCGTTGTGTAAAGTCAACCGTCCTGCGATATAGTTGTAAACGATGTTGATCCAATTGCTCTTGTGTAAGTCTAACATCAGATGGTAGTCTCTTTGCAATATCCACAATAACCATGTCTAAAGCCTCGATAGCTTTCCTCAACCTCCTTTCGAGAGTGCGACCATTTGCCAAAGACTTGATAACTCGTTGCTTCATCTTGGAGAAAGAAGAGCCCAGATCACCATCACTAACCTCTCGCTCCTTGGTCTTCTTCTCGTGGTAGGCATGCTCGTCGACTGCATCCTCGAGCTCCTCAACTGCATCCCTCAGGCGCCACAACGACTCGTCCAGCAAAACCCCAAGTCCTGAGTACGACTCCCTGGATTGAGCCGGTATGAGGGTATCGCGCATCTTCGGCAACTTCAGGCGTAGCATGCGCATCGACTCCTGCAATCTGTCGGGGTTGCTTCCCAGGTAGGATGAGGCCTTGTCGATCAGGTTAGCGATGACTTCATCTGTCGCCGACTGCCCTGCAAACACCAAATCCATGGTGGCGGCCGTAGGATATTAGCGTGTGGGAGCTGGGAGGGGGGAGGGATGGGGTGGAGCTTGGAGGAAGGTGGAGACTGTTAGGTTAGCTGGAGACGGGGGAGGT
More
|
||||||||||
| CDS seq | ATGGATTTGGTGTTTGCAGGGCAGTCGGCGACAGATGAAGTCATCGCTAACCTGATCGACAAGGCCTCATCCTACCTGGGAAGCAACCCCGACAGATTGCAGGAGTCGATGCGCATGCTACGCCTGAAGTTGCCGAAGATGCGCGATACCCTCATACCGGCTCAATCCAGGGAGTCGTACTCAGGACTTGGGGTTTTGCTGGACGAGTCGTTGTGGCGCCTGAGGGATGCAGTTGAGGAGCTCGAGGATGCAGTCGACGAGCATGCCTACCACGAGAAGAAGACCAAGGAGCGAGAGGTTAGTGATGGTGATCTGGGCTCTTCTTTCTCCAAGATGAAGCAACGAGTTATCAAGTCTTTGGCAAATGGTCGCACTCTCGAAAGGAGGTTGAGGAAAGCTATCGAGGCTTTAGACATGGTTATTGTGGATATTGCAAAGAGACTACCATCTGATGTTAGACTTACACAAGAGCAATTGGATCAACATCGTTTACAACTATATCGCAGGACGGTTGACTTTACACAACGATATTTCATGACGGCTGGCTTTAAGGATAGAGTGTTGGGCCGGGAGAAGGAGACTGATGTGATAGTCCGATGGCTGATCGATCCCTTGGATGATGATGATGCTGAAACTCAGGTTAGTCCAAATAATCATCATGTCTCAGTTATGTCCATAGTTGGCCACGGTGGCGTGGGGAAGACTACATTGGCACAACTGGTATATAATGATCCAAGGGTCAGAGATCATTTTGATATGGTTGCATGGTTATGTGTAACTTCAAGCTTTGATGTAGGAAGAATTATGCGTGAAATAGTACAGTGTGTTACACGTTCGCCATGTTCATCCGATTCTTTGGAAAACATGCAGCATATTCTCCAAGATAAAATAAATTCCACTAAAGCTTTTCTACTCGTTTTGGATGATGTCTGGGAAGAAAATCTACATGAATGGGAGAAACTATTTTCAGTTCTGAGGGGCATCAACACTAGAATCAAAATTTTATTGACAACCAGAACGCAATCAGTGGCAACTCTAGTTGAGAGTGTCACAGGATGTGAAGATCAGCACCTTAGGTTGCATGAACTTGAAGAAAATGGAAATCTACAGATCTTCTGCCAACTTGCTTTGGCTGATCTGAATGAAAGATCAGAAGATTATGCGGAACTCCAATCAATCGGCGCTAAGATTGTAAAGAAACTTGGAGGGACTCCCGCGGCAATAAAAAGTGCTGCTTATCTGTTACGAGTAAGATCATTAGAGTCCTGGCGAAGGTTTCTTCACGGTATGGATAATTTTGGAGCAGCAGTACCAAATATTATGGATGTCTTGAAAATAAGCTACTACAGGCTCTCGGCAGAGTTGCAGAGTTGCTTTCGCTATTGCAGCTTATTTCCAAAAAATCATCCATTCAGAAAGGAGGAGTTGGTGAGGGCTTGGATTTGGTCAGGATTGATATTTCCTCAATTCGGGAAAAAGGACGGAGAGTTATACTTGGCTCAATTGACTGCAAATTTGTTCCTTGATCGCTTTGGTGGAGAAAACGAAGAACCTGCATACTATGTTATGAATGACACAATGCATGATTTTGCAACATATATCTCACAGGGCGAATGTAAGAGGTTAACTGAAGCCGCAGACTTGAGAAACGTGAAGAGTTCGGTTCGACACATTAGTATTGCAGGTATTAACAATTTCACTGTTGTTGATGTGAAGGAATTGCTCCGTTTGACGAAGCTGCGCACAGTCATCATTGAAGATTGTGGCAATGTCGAGGAGGACGTGGTATACGCAATGGCAGAGGTCGTGAAGAACTCAAAATCCTTGCGTCTGTTAGAATGTTCTCTGTTCAAGATGTGCCATTTACCTGACAGACTTTCTAGTCTGATGCACCTTCGTCACGTCAAGATCTCAATGCTTTAA
More
|
||||||||||
| Protein seq | MDLVFAGQSATDEVIANLIDKASSYLGSNPDRLQESMRMLRLKLPKMRDTLIPAQSRESYSGLGVLLDESLWRLRDAVEELEDAVDEHAYHEKKTKEREVSDGDLGSSFSKMKQRVIKSLANGRTLERRLRKAIEALDMVIVDIAKRLPSDVRLTQEQLDQHRLQLYRRTVDFTQRYFMTAGFKDRVLGREKETDVIVRWLIDPLDDDDAETQVSPNNHHVSVMSIVGHGGVGKTTLAQLVYNDPRVRDHFDMVAWLCVTSSFDVGRIMREIVQCVTRSPCSSDSLENMQHILQDKINSTKAFLLVLDDVWEENLHEWEKLFSVLRGINTRIKILLTTRTQSVATLVESVTGCEDQHLRLHELEENGNLQIFCQLALADLNERSEDYAELQSIGAKIVKKLGGTPAAIKSAAYLLRVRSLESWRRFLHGMDNFGAAVPNIMDVLKISYYRLSAELQSCFRYCSLFPKNHPFRKEELVRAWIWSGLIFPQFGKKDGELYLAQLTANLFLDRFGGENEEPAYYVMNDTMHDFATYISQGECKRLTEAADLRNVKSSVRHISIAGINNFTVVDVKELLRLTKLRTVIIEDCGNVEEDVVYAMAEVVKNSKSLRLLECSLFKMCHLPDRLSSLMHLRHVKISML |
||||||||||
| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g10330 | LOC_Os12g10330.1 | Chr12 | 5469044 | 5471369 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATTTGGTGTTTGCAGGGCAGTCGGCGACAGATGAAGTCATCGCTAACCTGATCGACAAGGCCTCATCCTACCTGGGAAGCAACCCCGACAGATTGCAGGAGTCGATGCGCATGCTACGCCTGAAGTTGCCGAAGATGCGCGATACCCTCATACCGGCTCAATCCAGGGAGTCGTACTCAGGACTTGGGGTTTTGCTGGACGAGTCGTTGTGGCGCCTGAGGGATGCAGTTGAGGAGCTCGAGGATGCAGTCGACGAGCATGCCTACCACGAGAAGAAGACCAAGGAGCGAGAGGTTAGTGATGGTGATCTGGGCTCTTCTTTCTCCAAGATGAAGCAACGAGTTATCAAGTCTTTGGCAAATGGTCGCACTCTCGAAAGGAGGTTGAGGAAAGCTATCGAGGCTTTAGACATGGTTATTGTGGATATTGCAAAGAGACTACCATCTGATGTTAGACTTACACAAGAGCAATTGGATCAACATCGTTTACAACTATATCGCAGGACGGTTGACTTTACACAACGATATTTCATGACGGCTGGCTTTAAGGATAGAGTGTTGGGCCGGGAGAAGGAGACTGATGTGATAGTCCGATGGCTGATCGATCCCTTGGATGATGATGATGCTGAAACTCAGGTTAGTCCAAATAATCATCATGTCTCAGTTATGTCCATAGTTGGCCACGGTGGCGTGGGGAAGACTACATTGGCACAACTGGTATATAATGATCCAAGGGTCAGAGATCATTTTGATATGGTTGCATGGTTATGTGTAACTTCAAGCTTTGATGTAGGAAGAATTATGCGTGAAATAGTACAGTGTGTTACACGTTCGCCATGTTCATCCGATTCTTTGGAAAACATGCAGCATATTCTCCAAGATAAAATAAATTCCACTAAAGCTTTTCTACTCGTTTTGGATGATGTCTGGGAAGAAAATCTACATGAATGGGAGAAACTATTTTCAGTTCTGAGGGGCATCAACACTAGAATCAAAATTTTATTGACAACCAGAACGCAATCAGTGGCAACTCTAGTTGAGAGTGTCACAGGATGTGAAGATCAGCACCTTAGGTTGCATGAACTTGAAGAAAATGGAAATCTACAGATCTTCTGCCAACTTGCTTTGGCTGATCTGAATGAAAGATCAGAAGATTATGCGGAACTCCAATCAATCGGCGCTAAGATTGTAAAGAAACTTGGAGGGACTCCCGCGGCAATAAAAAGTGCTGCTTATCTGTTACGAGTAAGATCATTAGAGTCCTGGCGAAGGTTTCTTCACGGTATGGATAATTTTGGAGCAGCAGTACCAAATATTATGGATGTCTTGAAAATAAGCTACTACAGGCTCTCGGCAGAGTTGCAGAGTTGCTTTCGCTATTGCAGCTTATTTCCAAAAAATCATCCATTCAGAAAGGAGGAGTTGGTGAGGGCTTGGATTTGGTCAGGATTGATATTTCCTCAATTCGGGAAAAAGGACGGAGAGTTATACTTGGCTCAATTGACTGCAAATTTGTTCCTTGATCGCTTTGGTGGAGAAAACGAAGAACCTGCATACTATGTTATGAATGACACAATGCATGATTTTGCAACATATATCTCACAGGGCGAATGTAAGAGGTTAACTGAAGCCGCAGACTTGAGAAACGTGAAGAGTTCGGTTCGACACATTAGTATTGCAGGTATTAACAATTTCACTGTTGTTGATGTGAAGGAATTGCTCCGTTTGACGAAGCTGCGCACAGTCATCATTGAAGATTGTGGCAATGTCGAGGAGGACGTGGTATACGCAATGGCAGAGGTCGTGAAGAACTCAAAATCCTTGCGTCTGTTAGAATGTTCTCTGTTCAAGATGTGCCATTTACCTGACAGACTTTCTAGTCTGATGCACCTTCGTCACGTCAAGATCTCAATGCTTTAA
More
|
|||||||
| Protein seq | MDLVFAGQSATDEVIANLIDKASSYLGSNPDRLQESMRMLRLKLPKMRDTLIPAQSRESYSGLGVLLDESLWRLRDAVEELEDAVDEHAYHEKKTKEREVSDGDLGSSFSKMKQRVIKSLANGRTLERRLRKAIEALDMVIVDIAKRLPSDVRLTQEQLDQHRLQLYRRTVDFTQRYFMTAGFKDRVLGREKETDVIVRWLIDPLDDDDAETQVSPNNHHVSVMSIVGHGGVGKTTLAQLVYNDPRVRDHFDMVAWLCVTSSFDVGRIMREIVQCVTRSPCSSDSLENMQHILQDKINSTKAFLLVLDDVWEENLHEWEKLFSVLRGINTRIKILLTTRTQSVATLVESVTGCEDQHLRLHELEENGNLQIFCQLALADLNERSEDYAELQSIGAKIVKKLGGTPAAIKSAAYLLRVRSLESWRRFLHGMDNFGAAVPNIMDVLKISYYRLSAELQSCFRYCSLFPKNHPFRKEELVRAWIWSGLIFPQFGKKDGELYLAQLTANLFLDRFGGENEEPAYYVMNDTMHDFATYISQGECKRLTEAADLRNVKSSVRHISIAGINNFTVVDVKELLRLTKLRTVIIEDCGNVEEDVVYAMAEVVKNSKSLRLLECSLFKMCHLPDRLSSLMHLRHVKISML
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.329757 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0204600 | RBH | 0.0 | 0.0 | 1.282113 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10390 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0204600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006500 | RBH | 0.098137 | 21.919519 | 0.327616 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006570 | RBH | 0.063315 | 3.792612 | 0.235861 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006580 | RBH | 0.415127 | 25.199591 | 0.978951 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006480 | RBH | 0.015350 | 0.738416 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006440 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0082300 | SBH | 0.0036715 | 0.0347325 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006410 | RBH | 0.0 | 0.0 | 0.116050 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0087600 | RBH | 0.0637775 | 0.0756565 | 0.0887175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006440 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006340 | RBH | 0.153613 | 6.902589 | 0.184525 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006480 | RBH | 0.0 | 0.0 | 0.0 |
