Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g07680 | OGI:12010280 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:3861311-3863883 | ||||||||
| Gene Symbol | RPP30S, OsRpp30-S | ||||||||||
| DNA seq | TTTCATAGCGGAAGAATGAACAATGTGTAACTATTTAAGTAGCAACCAAAATTGCAATATCTGAGATGGATTGGAATGTGGTACAAGAGAATTGTGTTCTCGCTCTCAAGAACAAACAAAAAATTTACCTATTCTTCAGACAATACACAAGTCATAAGACTTCACTCTGCTAACTTGCACAGGCCCTTCTTGAGTTTCAACTGGGAATAGGATTTCGTTGCCATGGCTTAACTGCTCTTGCTGCTCGACAAAGAGGGACTCATCACCATCATAAGGTAAATGCAGTAGTTCAATCATCTTCATTGGCAGAAGGTTCTGGATTTATATCAAGAGATTGTGGTTCTCCTTTGTAAGCTGGCAATTCCAAAGATAGCAGATCTACTTCATGAGGCATAGGATCCCAACTAATCCAGTCAGCAAGCTTGAAGTCTGCTGAATTCAACTGCCTATTTGGTAACAGCCTGTCGATTCTAATGGTTTCCTTGTAGAAGTGCTTTTTCCTCAGAGCCTTGGAAACCAGTGACCTGAGAATGAACATATGGCTTAGAATACATGGCACGGCATCATGATTCATGCTAAACTGCCTAGCTTTCTAAAATAAGCTACGGATATCATATAAGAGACGTGCAAGTGACCTGCAGTTGACGGATAGAGCAGCTTTGGCTCGTTGGGTAGAAAGGCCAAGCAAATAAGAAGATAAGTTTATGGCATCATAGGGTCCTCTAATTTCAGAAGCAGTGTGAGCAGCACTTGATATGATGAGATTCTTTCCTTTAGTCCACTCCACCAAGAGCTGAAAAAAGGTGAAAGGTTTTGGTTACTAAGGAACTGAGTAATACAAGAGCTGAAAAAAGATGAAAAGGTTTTGGTTACTAAGGAACTGAGTATTAGTATTACGATATGCAAAGGCAATAAGGAAGAGCAAGAGATGGCCAACCTTGGCTTCGGCTATGGCCTGTCTCCTTGAAGCGGCATCAGCGATGAGGGGAGAATAGGCGATCTCCAAGTGCAGGCCCTTCTGCAGTGCAAGCTTGAGCATGGGGAGCTTGAGGCGGAAGGACAGCTTGTGGGAAAAGTCGATGGAGACAATATTGAGGTGGTCAAATGTGGCCTGACAGAGGTGGTCGAAGGCGGCTTGGGTGAGCGGCCGCGCGGCGACGATGTCATAGGTGCGAAGGAGGCGAGCGGCAGAGGGGGCCAGGGCGGAGGCGCAGGCGGCAGCGGAGTCGAGGGAGAGGGTGATGCGCGTGTATTGTAGGAAGGGATGTCGACGGCGGTGGAGGGAGGCGGAGGGTGACACCCGGAGAGAGGAGGCAATAGGTGCATGGGAGTCAGTGAGTAGGCCACGGTGAGGGTGATCAAGCGCGACCGCGGAGTAGCCGAGGTCAAGGGCACGGGCGACTACGCTAGTGTTGGTGGTGGTAGATTTGGAGTCGTCGGGGAGGATGCTGAGGTCGAAGAAGCCGGCAGGCGCCATGGCAAACAGTGGTATAGCTAGGAATTTTTCCTTGGGTAGTCCTACTTCAAAATTGCAGGTTAACATCACATACCAAAATTTTATACACAAGTTCAAAGTTAGTGAAAGGGCTATACAAAATTAGAAATATAACAATAGAGTCTTATAACAACAATAGTCAGCTAACTTAACAAGCAAGTTAAAATATGCAAATATTATAGAGATTTTCTCCCATCCTTGGAGAGGTATATACCTCCTCGTATTTGAGATATACCTATCCATAAAACAAGTCTTGTGCCAACTCAGTCTCTCTCTCTATCTCTCCCTCTCTGCTACTAGTGTGTGTGTTCTAACGAAATTTAGGGCGACCAACTATGTTCCTTCCTAAAAATGGGAAAAGTTGTGTTCCTTCCTTGTCAGGGACAAGCCAATGATTTTGAGGTTAGGTATTCGAAATGTGAAGGAATAAGAAAATTTTACAACCCAAAGCCTAATTTTGATATGTTTAATTTCATGTAGTTCTAAACTACTATTAGATAATATATAGCAGATATAAGTATAATTTCATAAATTCATAAAATTGGCTATAAATTGAATGTGCTTAACATATGAAAGTAGGAAACTTCTAACTGGCAATGCTTCACAAGGTTCAAATTGGGAGTTTGGGAGTTGGGACAAGGTTCAAAACTGAAAGTTCAATTGTTCAAATATACTAGCAATCAATCAGCCATCCCAGGCTTCAAATGAAAGAGATGTTCCTAATCCAAAATCGCAGCACCACAGCAGCAGACAACAATTACCTTGGGCTTCTCGGCCTCTCGGGGCAGCGCAGAGGGCGTCGGCGGCGGCGGCGGCGGCACCGCGCGACGGCGCGAAGCTGGCCGGGCTTGGCTATTTGGCGTCGGGCGCGGCGGCGACTGCGGCTCTCGCCTCTCGGCTTCTCAAGGCGACGCGATTGCACGAGGCGGGAGCAAGGCGCGAAGGCGGGCGGGGGTTGGCGAGTTGGCGGACAGCGGCTCGGCGCGACCGCGAGACCGCGTCTGATCGGCGGGCGGCTGCGGCTGCGGCGGCGGCGGCGGCGGCGACGCGACGGCCTGAGAGAGAGATGACGCAGTTG
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| CDS seq | ATGGCGCCTGCCGGCTTCTTCGACCTCAGCATCCTCCCCGACGACTCCAAATCTACCACCACCAACACTAGCGTAGTCGCCCGTGCCCTTGACCTCGGCTACTCCGCGGTCGCGCTTGATCACCCTCACCGTGGCCTACTCACTGACTCCCATGCACCTATTGCCTCCTCTCTCCGGGTGTCACCCTCCGCCTCCCTCCACCGCCGTCGACATCCCTTCCTACAATACACGCGCATCACCCTCTCCCTCGACTCCGCTGCCGCCTGCGCCTCCGCCCTGGCCCCCTCTGCCGCTCGCCTCCTTCGCACCTATGACATCGTCGCCGCGCGGCCGCTCACCCAAGCCGCCTTCGACCACCTCTGTCAGGCCACATTTGACCACCTCAATATTGTCTCCATCGACTTTTCCCACAAGCTGTCCTTCCGCCTCAAGCTCCCCATGCTCAAGCTTGCACTGCAGAAGGGCCTGCACTTGGAGATCGCCTATTCTCCCCTCATCGCTGATGCCGCTTCAAGGAGACAGGCCATAGCCGAAGCCAAGCTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCTCACACTGCTTCTGAAATTAGAGGACCCTATGATGCCATAAACTTATCTTCTTATTTGCTTGGCCTTTCTACCCAACGAGCCAAAGCTGCTCTATCCGTCAACTGCAGGTCACTGGTTTCCAAGGCTCTGAGGAAAAAGCACTTCTACAAGGAAACCATTAGAATCGACAGGCTGTTACCAAATAGGCAGTTGAATTCAGCAGACTTCAAGCTTGCTGACTGGATTAGTTGGGATCCTATGCCTCATGAAGTAGATCTGCTATCTTTGGAATTGCCAGCTTACAAAGGAGAACCACAATCTCTTGATATAAATCCAGAACCTTCTGCCAATGAAGATGATTGA
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| Protein seq | MAPAGFFDLSILPDDSKSTTTNTSVVARALDLGYSAVALDHPHRGLLTDSHAPIASSLRVSPSASLHRRRHPFLQYTRITLSLDSAAACASALAPSAARLLRTYDIVAARPLTQAAFDHLCQATFDHLNIVSIDFSHKLSFRLKLPMLKLALQKGLHLEIAYSPLIADAASRRQAIAEAKLLVEWTKGKNLIISSAAHTASEIRGPYDAINLSSYLLGLSTQRAKAALSVNCRSLVSKALRKKHFYKETIRIDRLLPNRQLNSADFKLADWISWDPMPHEVDLLSLELPAYKGEPQSLDINPEPSANEDD |
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| Function | Protein GAMETOPHYTE DEFECTIVE 1 [UniProtKB/Swiss-Prot:F4JXF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g07680 | LOC_Os12g07680.1 | Chr12 | 3861311 | 3863883 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCTGCCGGCTTCTTCGACCTCAGCATCCTCCCCGACGACTCCAAATCTACCACCACCAACACTAGCGTAGTCGCCCGTGCCCTTGACCTCGGCTACTCCGCGGTCGCGCTTGATCACCCTCACCGTGGCCTACTCACTGACTCCCATGCACCTATTGCCTCCTCTCTCCGGGTGTCACCCTCCGCCTCCCTCCACCGCCGTCGACATCCCTTCCTACAATACACGCGCATCACCCTCTCCCTCGACTCCGCTGCCGCCTGCGCCTCCGCCCTGGCCCCCTCTGCCGCTCGCCTCCTTCGCACCTATGACATCGTCGCCGCGCGGCCGCTCACCCAAGCCGCCTTCGACCACCTCTGTCAGGCCACATTTGACCACCTCAATATTGTCTCCATCGACTTTTCCCACAAGCTGTCCTTCCGCCTCAAGCTCCCCATGCTCAAGCTTGCACTGCAGAAGGGCCTGCACTTGGAGATCGCCTATTCTCCCCTCATCGCTGATGCCGCTTCAAGGAGACAGGCCATAGCCGAAGCCAAGCTCTTGGTGGAGTGGACTAAAGGAAAGAATCTCATCATATCAAGTGCTGCTCACACTGCTTCTGAAATTAGAGGACCCTATGATGCCATAAACTTATCTTCTTATTTGCTTGGCCTTTCTACCCAACGAGCCAAAGCTGCTCTATCCGTCAACTGCAGGTCACTGGTTTCCAAGGCTCTGAGGAAAAAGCACTTCTACAAGGAAACCATTAGAATCGACAGGCTGTTACCAAATAGGCAGTTGAATTCAGCAGACTTCAAGCTTGCTGACTGGATTAGTTGGGATCCTATGCCTCATGAAGTAGATCTGCTATCTTTGGAATTGCCAGCTTACAAAGGAGAACCACAATCTCTTGATATAAATCCAGAACCTTCTGCCAATGAAGATGATTGA
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| Protein seq | MAPAGFFDLSILPDDSKSTTTNTSVVARALDLGYSAVALDHPHRGLLTDSHAPIASSLRVSPSASLHRRRHPFLQYTRITLSLDSAAACASALAPSAARLLRTYDIVAARPLTQAAFDHLCQATFDHLNIVSIDFSHKLSFRLKLPMLKLALQKGLHLEIAYSPLIADAASRRQAIAEAKLLVEWTKGKNLIISSAAHTASEIRGPYDAINLSSYLLGLSTQRAKAALSVNCRSLVSKALRKKHFYKETIRIDRLLPNRQLNSADFKLADWISWDPMPHEVDLLSLELPAYKGEPQSLDINPEPSANEDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.208595 | 0.421995 | 0.266297 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0175900 | RBH | 0.432496 | 0.879727 | 1.074523 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01074 | SBH | 2.673871 | 2.081630 | 1.415045 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0175900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005040 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000100 | SBH | 0.864430 | 0.323519 | 4.320218 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005300 | RBH | 0.000000 | 4.056070 | 2.353904 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005120 | SBH | 0.043495 | 0.088196 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005230 | SBH | 0.000000 | 0.000000 | 1.887099 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0064500 | RBH | 0.542732 | 2.166142 | 0.537992 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005210 | SBH | 0.000000 | 0.000000 | 0.174032 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0068800 | RBH | 0.4063805 | 1.751596 | 0.815976 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005040 | SBH | 0.144909 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005290 | RBH | 0.110723 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005230 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000100 | SBH | 1.334382 | 0.0 | 0.775326 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005170 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005050 | SBH | 0.000000 | 0.000000 | 0.204158 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005240 | SBH | 0.000000 | 0.000000 | 0.681745 |
