Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g06490 | OGI:12008370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:3128498-3131907 | ||||||||
| Gene Symbol | WNK9, OsWNK9 | ||||||||||
| DNA seq | TTGGACACGGAAACCCAGAGTTTGTCTTTTTTTTGGGACGGAGGGATTATCTCGTTTTCCACTTTCGACTTCTAATCATGTATCCTCAATTCAGGGAAGGAGAATGTGCAATAAATAAAACCGGCAGCATAAAGCCGATGGAAACAAATGCAAAGTGCACAGCCAATCTGATTATGAATTCAGACGTGCCACAACTAATTCAGCAATTGCATTAAAGATGAAAAAAAACCCAACATTTCCGACTGATTACTCTCATTTTTGCTGCTCCTTCCTAGCAAATAAATTATCTGAACTAGACCTAACTTTCATCATCATCACCACCGGAGGAACTCCATGCTCAGCAGCACATCTCGAGGGCATTGTAATATGAGTGCCCACAGGTGGCTAAAGCATAAGGTCCACTCCATCTAAAAGAAAATACTATAAGGATACATAACCAGCGAAGCCAACTATGACTATTAGTTAGTAGCAGCGGTTGGGGAAGCAGAATCACTCTCGGTCAGCGCTTCTCAATTGTCAAGCCGTTTGCACCCTCAGAAACCACCTGACGGATGGCGACACACGGTGTCCATTCAGGAATCAGGATGACCAAGAATGCATCGATCAACTGCGCGATGATCGGTCTGCTGTCTTGTGTCAGTCCAAATTGCTCAACCATTTCCACAGCCACAGAAAGACTTGTATCTTCAGTCAAATTGAATGGGAATTCAACACTCTTGAAACAACCTGAAAGGAAGTTGATGTTCAGTACAAAACGTGTTGTTGAATTCTGGAAAAGAAAGATTTCAAACAATATGATTACCGCTGGGATCAGGAAATCTTAGCCATAAATCAACATGGCTGGCTACATCAACATTTCCTGTCAGCAGAAACTCGCCCTTACGAAGCATGCAACTGACAGGCTGCTGCCCATCTTCAGACATATTCTTGACCAGAGAGACTGAGATAAGATCATCATCCTGGAGGAAAGAGCTTTTCAACAGCTCTGTTGCAGACATTCTGTTCTCTACTGGAGCTAAACAGTTCTCTATGAAAGATCTTACTTCTGCATCTTTAATTTTGTAGAACGCAGCTGGTTTCTTACCCTATATCAAATAGGTCATACAAACAAAAAGTTAAGTTGTTGGCTACTACAATCACTCTGGTATCTGTAGACATCAAGACCTTACCTCATCAATCTTTTTGAATATATGGGCCATGCCTTGACATTCACTGTATGGGTATTCGCATGTCACCATTTCAAGCATGCACATCCCAAATGAATATATATCAACCAATTCATTGTAATGCCCAGTTAACAGCTCTGGTGCCATAAATTCTAAGGTGCCTGCAGTTAATGATTAATATATCCTTATTACACATCCAACTGAAAGAGAAATCCTTTTTAAGATGAAAAGAAAACAGAATTATATGAGTCAAGAAAATTGGTAACATAAGTTTAAAAGTGGACATACATGCTAAATAGAATAGTTATGTTCTGAGAAAACTGTAACAGTTAGAAAACACATAAGATGGCAGACATATAACAATGTTGATATGAGATATCTACCTTTTATACTTTTTTTCTGTTGCTGCATGAATGTTGCCAAACCAAAATCACCAATCTTCACTTTCCCATGATTTCCATTTATGAATATATTGTCACATTTTAAATCCCTGTGTATAATTGCTGGCTTCTGACTGTGCAGATATTCTAGCCCTGTTAATATCTGTATTGCCCATCGTTTCATAGCCTTCATATTCACTTTCTTGTGCTTTCTGCGGTACCTGGTTACATGGTGACATAAAAAAGGTTACATTGTAATTTATAAGGTAAAAGAAACGCAGTATCCCTCTTGAAGTTTTAGGGTAAATAATTTTAAGCAACGCTCATCTAGTCATCTATACTGAATTAAAGGGCGGTACAAACAAATGACAATGAAAAGGAAAAGTTACCAAATATTATCCAAGAATTGTAAAGGAGCCAACTAAAACTTTAATTTGCACAATGGAAAACTGTAAAAATGTTCAGGTAGCACTAATTCAGTAAAAAAAAGGTATATTTAGAAGATAGATATCCAAACCAATGAATAGGCAACAGTTTATTAATATGCTCCAGCTGACAGCATAGTTGTCGTAAGGATGAGGGGCATACTGTGTCAAGCTCCCGGATGTGAACAACTCTGTGATTATGTTAACAGTCTTCTTCTCCCCATCAACCCATGAAGCAAACATTTTCTCAATGTTCTTATGCTTGAGTGTCTTCAAAAGTTGAATCTCTGTGTTTAGTTGCTTCATCTTCTTAGAGGACCCCATGACAGAGTCATCGATCCGGGATTGGCTCCATGCTACCTCGACACCCTCCAGCTTATCGAAGGCTTTGTAGCTATTTCCAAATCACAATTAAGGAATATGATATGAACAATATAATTTTGTCCCACCAGCATGAGACATTCAGGTTGTGAAACCCGAATTAAAGAAACACTGGAACATCTTGAATCAGCCAAGAATAAATAAACTTGAAATTTGTCACACTTTATCCATAATAGAAGTACAGATGGTTAGCAGAACTAAATATTTATGGATTAACATCTTTCCATGAATATATATCAAGGTTAATAAGGTCAACACCGATCAATAATTTTAGCCACAGATTACAGAAGCATGAAAAGTTCGGTTCCATCTCTGAATGTGTCTGTAGATTCTACATGGAATCGCGGGTGTCCATCATAAGTTCAGAACACATCTAATACTGATAAATAAATAATCATCGGGCATGGTTCTACTGTGATCAACAAATCGAATTATATTCCACAACTAATTCAATCGTGATAATTCAATCAAGAACAAAAAGGGCTAAACTAGAAACAGCACATGAGATTGATGAAAGGATACACCGTTTTGACGGCCCCTGACCCCACGATCTCATCATACTGCACACGCAGAGGGCAACAACAACAACAACAATTAGCCACCACCCGAATCCACCCATCTTCCGCAGCAGCAACAAAACCCTAGAAGGCTAGATAGAACTCGAACAGAAACGAGCAGGACAGCAACCCGTACCCGGATGAAGCGGCCTGCGGGGTCCGCCTCGACGTACCCCTCCTCGTCGCCGTCCTCGTCCGGCGGCTGCTCCTCCGCCTCCGCCTCCACCAGATCCATCGGACCCGCAGCCGCCGCCGTCGCCGCCGCCGCCGCTTTCCGCCGAGATTGTCAACTGCTTCCCAGCTGAGACCGACCCGCACGGCGGCGATTTAATAGCGGCGGGAGGAGGTAGGCGGGCCGATTCGTGGGCCCACGTTGGGTGGGCCCGGCCTCGCCAAGTCAGCGCGGGGGACGACGGGACATGTGGGTGGGGTCCACGTATCGGTGAGAGACGGTTCAGTGGGAGTTGGTCCATGAGATCGTTTCGGATAGGGATGGATTTC
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| CDS seq | ATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGATCGATGACTCTGTCATGGGGTCCTCTAAGAAGATGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTCAGAAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAAAGATTGATGAGGGTAAGAAACCAGCTGCGTTCTACAAAATTAAAGATGCAGAAGTAAGATCTTTCATAGAGAACTGTTTAGCTCCAGTAGAGAACAGAATGTCTGCAACAGAGCTGTTGAAAAGCTCTTTCCTCCAGGATGATGATCTTATCTCAGTCTCTCTGGTCAAGAATATGTCTGAAGATGGGCAGCAGCCTGTCAGTTGCATGCTTCGTAAGGGCGAGTTTCTGCTGACAGGAAATGTTGATGTAGCCAGCCATGTTGATTTATGGCTAAGATTTCCTGATCCCAGCGGTTGTTTCAAGAGTGTTGAATTCCCATTCAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGA
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| Protein seq | MDLVEAEAEEQPPDEDGDEEGYVEADPAGRFIRYDEIVGSGAVKTVYKAFDKLEGVEVAWSQSRIDDSVMGSSKKMKQLNTEIQLLKTLKHKNIEKMFASWVDGEKKTVNIITELFTSGSLTQYRRKHKKVNMKAMKRWAIQILTGLEYLHSQKPAIIHRDLKCDNIFINGNHGKVKIGDFGLATFMQQQKKSIKGTLEFMAPELLTGHYNELVDIYSFGMCMLEMVTCEYPYSECQGMAHIFKKIDEGKKPAAFYKIKDAEVRSFIENCLAPVENRMSATELLKSSFLQDDDLISVSLVKNMSEDGQQPVSCMLRKGEFLLTGNVDVASHVDLWLRFPDPSGCFKSVEFPFNLTEDTSLSVAVEMVEQFGLTQDSRPIIAQLIDAFLVILIPEWTPCVAIRQVVSEGANGLTIEKR |
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| Function | Probable serine/threonine-protein kinase WNK9 [UniProtKB/Swiss-Prot:Q2QXC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g06490 | LOC_Os12g06490.1 | Chr12 | 3128498 | 3131907 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATCTGGTGGAGGCGGAGGCGGAGGAGCAGCCGCCGGACGAGGACGGCGACGAGGAGGGGTACGTCGAGGCGGACCCCGCAGGCCGCTTCATCCGGTATGATGAGATCGTGGGGTCAGGGGCCGTCAAAACGGTCTACAAAGCCTTCGATAAGCTGGAGGGTGTCGAGGTAGCATGGAGCCAATCCCGGATCGATGACTCTGTCATGGGGTCCTCTAAGAAGATGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTCAGAAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAAAGATTGATGAGGGTAAGAAACCAGCTGCGTTCTACAAAATTAAAGATGCAGAAGTAAGATCTTTCATAGAGAACTGTTTAGCTCCAGTAGAGAACAGAATGTCTGCAACAGAGCTGTTGAAAAGCTCTTTCCTCCAGGATGATGATCTTATCTCAGTCTCTCTGGTCAAGAATATGTCTGAAGATGGGCAGCAGCCTGTCAGTTGCATGCTTCGTAAGGGCGAGTTTCTGCTGACAGGAAATGTTGATGTAGCCAGCCATGTTGATTTATGGCTAAGATTTCCTGATCCCAGCGGTTGTTTCAAGAGTGTTGAATTCCCATTCAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGA
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| Protein seq | MDLVEAEAEEQPPDEDGDEEGYVEADPAGRFIRYDEIVGSGAVKTVYKAFDKLEGVEVAWSQSRIDDSVMGSSKKMKQLNTEIQLLKTLKHKNIEKMFASWVDGEKKTVNIITELFTSGSLTQYRRKHKKVNMKAMKRWAIQILTGLEYLHSQKPAIIHRDLKCDNIFINGNHGKVKIGDFGLATFMQQQKKSIKGTLEFMAPELLTGHYNELVDIYSFGMCMLEMVTCEYPYSECQGMAHIFKKIDEGKKPAAFYKIKDAEVRSFIENCLAPVENRMSATELLKSSFLQDDDLISVSLVKNMSEDGQQPVSCMLRKGEFLLTGNVDVASHVDLWLRFPDPSGCFKSVEFPFNLTEDTSLSVAVEMVEQFGLTQDSRPIIAQLIDAFLVILIPEWTPCVAIRQVVSEGANGLTIEKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g06490 | LOC_Os12g06490.2 | Chr12 | 3128500 | 3131907 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGTCCTCTAAGAAGATGAAGCAACTAAACACAGAGATTCAACTTTTGAAGACACTCAAGCATAAGAACATTGAGAAAATGTTTGCTTCATGGGTTGATGGGGAGAAGAAGACTGTTAACATAATCACAGAGTTGTTCACATCCGGGAGCTTGACACAGTACCGCAGAAAGCACAAGAAAGTGAATATGAAGGCTATGAAACGATGGGCAATACAGATATTAACAGGGCTAGAATATCTGCACAGTCAGAAGCCAGCAATTATACACAGGGATTTAAAATGTGACAATATATTCATAAATGGAAATCATGGGAAAGTGAAGATTGGTGATTTTGGTTTGGCAACATTCATGCAGCAACAGAAAAAAAGTATAAAAGGCACCTTAGAATTTATGGCACCAGAGCTGTTAACTGGGCATTACAATGAATTGGTTGATATATATTCATTTGGGATGTGCATGCTTGAAATGGTGACATGCGAATACCCATACAGTGAATGTCAAGGCATGGCCCATATATTCAAAAAGATTGATGAGGGTAAGAAACCAGCTGCGTTCTACAAAATTAAAGATGCAGAAGTAAGATCTTTCATAGAGAACTGTTTAGCTCCAGTAGAGAACAGAATGTCTGCAACAGAGCTGTTGAAAAGCTCTTTCCTCCAGGATGATGATCTTATCTCAGTCTCTCTGGTCAAGAATATGTCTGAAGATGGGCAGCAGCCTGTCAGTTGCATGCTTCGTAAGGGCGAGTTTCTGCTGACAGGAAATGTTGATGTAGCCAGCCATGTTGATTTATGGCTAAGATTTCCTGATCCCAGCGGTTGTTTCAAGAGTGTTGAATTCCCATTCAATTTGACTGAAGATACAAGTCTTTCTGTGGCTGTGGAAATGGTTGAGCAATTTGGACTGACACAAGACAGCAGACCGATCATCGCGCAGTTGATCGATGCATTCTTGGTCATCCTGATTCCTGAATGGACACCGTGTGTCGCCATCCGTCAGGTGGTTTCTGAGGGTGCAAACGGCTTGACAATTGAGAAGCGCTGA
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| Protein seq | MGSSKKMKQLNTEIQLLKTLKHKNIEKMFASWVDGEKKTVNIITELFTSGSLTQYRRKHKKVNMKAMKRWAIQILTGLEYLHSQKPAIIHRDLKCDNIFINGNHGKVKIGDFGLATFMQQQKKSIKGTLEFMAPELLTGHYNELVDIYSFGMCMLEMVTCEYPYSECQGMAHIFKKIDEGKKPAAFYKIKDAEVRSFIENCLAPVENRMSATELLKSSFLQDDDLISVSLVKNMSEDGQQPVSCMLRKGEFLLTGNVDVASHVDLWLRFPDPSGCFKSVEFPFNLTEDTSLSVAVEMVEQFGLTQDSRPIIAQLIDAFLVILIPEWTPCVAIRQVVSEGANGLTIEKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.742717 | 1.666756 | 2.299041 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0162100 | RBH | 3.748048 | 2.357451 | 17.083414 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06140 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0162100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004140 | RBH | 0.853761 | 72.530075 | 10.094222 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004380 | RBH | 0.661631 | 14.378496 | 5.246062 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004380 | RBH | 2.301530 | 43.486198 | 13.277658 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004210 | RBH | 0.422634 | 0.874404 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004390 | RBH | 6.472312 | 43.419781 | 33.298283 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0053600 | RBH | 8.846875 | 64.0497705 | 29.076637 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004380 | RBH | 0.437566 | 2.488803 | 2.578769 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0057900 | RBH | 10.441808 | 60.797449 | 24.699682 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004170 | RBH | 0.622075 | 1.239105 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004390 | RBH | 0.809659 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004400 | RBH | 9.053432 | 44.469463 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004350 | RBH | 0.870185 | 0.0 | 3.415759 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004290 | RBH | 0.975341 | 30.408779 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004210 | RBH | 0.443464 | 14.660175 | 4.660404 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004430 | RBH | 3.132030 | 175.675842 | 19.780964 |
