Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g05940 | OGI:12007490 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:2737746-2740111 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCATTCAGTGATACAGAGGAGGCATGGAATTTTTGGGTCACGTATGGAGGTCGGATGGGCTTTGATGTTAGAAAGAAGTATCACAATAAAAATCAAGTAACACAGAAAACTACATCAGCTAGATTTGTTTGCTCCAAACAAGGTTTTCGAGGCAAGGATAAAAGAGATAATTTGACTAAGCATCCTCGAGCTGAGACGAGAATTGGATGCAACGTCCGCATGGGGCTTACACTCAATCGAGTAAACGAAAAGTATGAGATATCTGATCTGGAAGTCATGCACAATCACATACTGCAAACGCCAGAAACTTCTCACTTAATGCCATCTCAGCGCAAAATAACTGAAGTGCAAGCCTTTGAAATTGAAATGGCAGATGACACTAGTATTCAGCCCAGAATCGCTCATGAGTTGGCTGCCCGACATGTTGGTGGGTCATCTAATCTTGGCTACACTTGTCTTGATCAGCAAAATTATTTGCGAACTAAACGTCAAAAGGAGTTGAAATATGGTGAGGCTGGGAGCTTGTTGAATTATTTTAAGAATAAGGCCATAGATAATCCTTCATTTCATTATGCTGTGAAATTGGATAGTGAGGAACAAATAACAAATATCTTTTGGGCAGAGATGATTATAGATTATGCTCACTTTGGTGATGTTGTTACCTTCGATACAACCTTTGGGACAAATAAAGAAAGCTGGCCATTTGGTGTATTTGTTGGATTTAACCACTTTAGAGAAACTGTAGTTTTTGGTGCTGCTCTCATGTATGATGAGACTTGTGACTCATTCTGTTGGCTTTTTGACGCCTTTTTGTCATGCCACAATCACAAGCATCCACAAACTATTTATACCGATCAGGATGTTGCTATGGGAAAGGCTATCACAGAGGTATTTACAGAAACTCGGCATGGCTTATGCACTTTTCACATAATGCAAAATGCAAACAAACATATAAATCGTCAGAAGACTAGTGATGGCTCTAATGTCCTTGCTGATTTTAGTGCTTGCATGTGTGAACATGAGGATGTGGAAAAATTTGAGGAAGTCTTTGCTGATATGAGGACAAAAGTTCGCAAAGGGACATGGTTGGATAGTGTTTATAAGTTGAAAGAGAAGTGGGCTGAATGCTTTATGAAGAATGCATACACATTAGGAATGCGAAGCACTCAATTGAGCGAGGGACTGAACAGTGATTTGAAGGAGTATTTAAATTGTGAATTAAACATTGTACGCTTTTTCCACCACTTTGACAGAGTTGTACAAGGGAAGCGAGATAAAGAGATCAAATCAGAGTATGAATCCAGGAAAAAATTGCCACGCATCTTAATGAGAATTCCTATGCTATTGCAAACAAGTAAGCTCTACACCCCGCAGATTTTTTAGGCCTTTCAGAAAGAATATGAAAGATCGATGACAGCTTATACAAAAGTATTGGATGAGGGCAGGGCATATATTGTTGGGATAAGATCTCTAGATGATGATTGTACAATTGAAGAAGAGTATATGGTTGTTGGAAATCATCAAGAGAGTATGGTGTCATGTGATTGTCGACAGTTTGAGAGGGTAGGAATACTTTGCAGCCATGCATTGAAGATTCTTGATGTGATGAATATTAAGCAATTACCAGATCATTATGTTCTCAAGAGATGGACACGAGAGGCGCGTCATGGGGTTGTCCATGATATATCTGGAAGACATGTCCTAGAAAATCCTAAACTAGACGCTTCACGTTGATATAAGTTTCTTTCACACAAATTTATCAGTTTGGCGTCTCAGGCTGCAGATTTTGAAGAGTGCTTTGCGTTTGTTGATAATGCTCTTGAAACCCTTGGACAGCAAGTGGAACAAATGGTAGAAGTGAATACAAATATTCAGTCGAATTTAGAGACAGAGTTTGAGATACCTGAAAATGTCTCCCAAGCTATTGGCCTAAAGAAAAAAGAGACCCGGTGTAGCACATCGAAGCGAAAGAAGAATTGGGTTGACAAGCTACATAAAAAAAGAAAGAAAAGCCTAAGGTATGTATGTATGCTAAAAAGAAAAAATAAATGAAATTAAACGTTCATTAGTTATTCTGTTGTAAATCACAATTTAGGTAACCACGGTCCACTGACAGGCTAAGAATGGGAATGAAGTAGCACATCCTGAGCCATTAGAAGAGGACATATTGGAGAATAGTACAAAAGAATCTCACCAGGATTTTGAATTTTTGGGTAGCTATACCCAGCTACTGGCGGTATGCTAACCCTGACTTTTGTTTTTTAAGATTTGATAAATTCCAATTTTTTAACTTATATCAGTTTATAAATTTGCAGGGTGATTCAGATGGATATGAGTTATATTCTGAAGGATTTCATCAGTAG
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| CDS seq | ATGGCATTCAGTGATACAGAGGAGGCATGGAATTTTTGGGTCACGTATGGAGGTCGGATGGGCTTTGATGTTAGAAAGAAGTATCACAATAAAAATCAAGTAACACAGAAAACTACATCAGCTAGATTTGTTTGCTCCAAACAAGGTTTTCGAGGCAAGGATAAAAGAGATAATTTGACTAAGCATCCTCGAGCTGAGACGAGAATTGGATGCAACGTCCGCATGGGGCTTACACTCAATCGAGTAAACGAAAAGTATGAGATATCTGATCTGGAAGTCATGCACAATCACATACTGCAAACGCCAGAAACTTCTCACTTAATGCCATCTCAGCGCAAAATAACTGAAGTGCAAGCCTTTGAAATTGAAATGGCAGATGACACTAGTATTCAGCCCAGAATCGCTCATGAGTTGGCTGCCCGACATGTTGGTGGGTCATCTAATCTTGGCTACACTTGTCTTGATCAGCAAAATTATTTGCGAACTAAACGTCAAAAGGAGTTGAAATATGGTGAGGCTGGGAGCTTGTTGAATTATTTTAAGAATAAGGCCATAGATAATCCTTCATTTCATTATGCTGTGAAATTGGATAGTGAGGAACAAATAACAAATATCTTTTGGGCAGAGATGATTATAGATTATGCTCACTTTGGTGATGTTGTTACCTTCGATACAACCTTTGGGACAAATAAAGAAAGCTGGCCATTTGGTGTATTTGTTGGATTTAACCACTTTAGAGAAACTGTAGTTTTTGGTGCTGCTCTCATGTATGATGAGACTTGTGACTCATTCTGTTGGCTTTTTGACGCCTTTTTGTCATGCCACAATCACAAGCATCCACAAACTATTTATACCGATCAGGATGTTGCTATGGGAAAGGCTATCACAGAGGTATTTACAGAAACTCGGCATGGCTTATGCACTTTTCACATAATGCAAAATGCAAACAAACATATAAATCGTCAGAAGACTAGTGATGGCTCTAATGTCCTTGCTGATTTTAGTGCTTGCATGTGTGAACATGAGGATGTGGAAAAATTTGAGGAAGTCTTTGCTGATATGAGGACAAAAGTTCGCAAAGGGACATGGTTGGATAGTGTTTATAAGTTGAAAGAGAAGTGGGCTGAATGCTTTATGAAGAATGCATACACATTAGGAATGCGAAGCACTCAATTGAGCGAGGGACTGAACAGTGATTTGAAGGAGTATTTAAATTGTGAATTAAACATTGTACGCTTTTTCCACCACTTTGACAGAGTTGTACAAGGGAAGCGAGATAAAGAGATCAAATCAGAGTATGAATCCAGGAAAAAATTGCCACGCATCTTAATGAGAATTCCTATGCTATTGCAAACAAATTTTGAAGAGTGCTTTGCGTTTGTTGATAATGCTCTTGAAACCCTTGGACAGCAAGTGGAACAAATGGTAGAAGTGAATACAAATATTCAGTCGAATTTAGAGACAGAGTTTGAGATACCTGAAAATGTCTCCCAAGCTATTGGCCTAAAGAAAAAAGAGACCCGGTGTAGCACATCGAAGCGAAAGAAGAATTGGGTTGACAAGCTACATAAAAAAAGAAAGAAAAGCCTAAGGTATGCTAAGAATGGGAATGAAGTAGCACATCCTGAGCCATTAGAAGAGGACATATTGGAGAATAGTACAAAAGAATCTCACCAGGATTTTGAATTTTTGGGTAGCTATACCCAGCTACTGGCGGGTGATTCAGATGGATATGAGTTATATTCTGAAGGATTTCATCAGTAG
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| Protein seq | MAFSDTEEAWNFWVTYGGRMGFDVRKKYHNKNQVTQKTTSARFVCSKQGFRGKDKRDNLTKHPRAETRIGCNVRMGLTLNRVNEKYEISDLEVMHNHILQTPETSHLMPSQRKITEVQAFEIEMADDTSIQPRIAHELAARHVGGSSNLGYTCLDQQNYLRTKRQKELKYGEAGSLLNYFKNKAIDNPSFHYAVKLDSEEQITNIFWAEMIIDYAHFGDVVTFDTTFGTNKESWPFGVFVGFNHFRETVVFGAALMYDETCDSFCWLFDAFLSCHNHKHPQTIYTDQDVAMGKAITEVFTETRHGLCTFHIMQNANKHINRQKTSDGSNVLADFSACMCEHEDVEKFEEVFADMRTKVRKGTWLDSVYKLKEKWAECFMKNAYTLGMRSTQLSEGLNSDLKEYLNCELNIVRFFHHFDRVVQGKRDKEIKSEYESRKKLPRILMRIPMLLQTNFEECFAFVDNALETLGQQVEQMVEVNTNIQSNLETEFEIPENVSQAIGLKKKETRCSTSKRKKNWVDKLHKKRKKSLRYAKNGNEVAHPEPLEEDILENSTKESHQDFEFLGSYTQLLAGDSDGYELYSEGFHQ |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g05940 | LOC_Os12g05940.1 | Chr12 | 2737746 | 2740111 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCATTCAGTGATACAGAGGAGGCATGGAATTTTTGGGTCACGTATGGAGGTCGGATGGGCTTTGATGTTAGAAAGAAGTATCACAATAAAAATCAAGTAACACAGAAAACTACATCAGCTAGATTTGTTTGCTCCAAACAAGGTTTTCGAGGCAAGGATAAAAGAGATAATTTGACTAAGCATCCTCGAGCTGAGACGAGAATTGGATGCAACGTCCGCATGGGGCTTACACTCAATCGAGTAAACGAAAAGTATGAGATATCTGATCTGGAAGTCATGCACAATCACATACTGCAAACGCCAGAAACTTCTCACTTAATGCCATCTCAGCGCAAAATAACTGAAGTGCAAGCCTTTGAAATTGAAATGGCAGATGACACTAGTATTCAGCCCAGAATCGCTCATGAGTTGGCTGCCCGACATGTTGGTGGGTCATCTAATCTTGGCTACACTTGTCTTGATCAGCAAAATTATTTGCGAACTAAACGTCAAAAGGAGTTGAAATATGGTGAGGCTGGGAGCTTGTTGAATTATTTTAAGAATAAGGCCATAGATAATCCTTCATTTCATTATGCTGTGAAATTGGATAGTGAGGAACAAATAACAAATATCTTTTGGGCAGAGATGATTATAGATTATGCTCACTTTGGTGATGTTGTTACCTTCGATACAACCTTTGGGACAAATAAAGAAAGCTGGCCATTTGGTGTATTTGTTGGATTTAACCACTTTAGAGAAACTGTAGTTTTTGGTGCTGCTCTCATGTATGATGAGACTTGTGACTCATTCTGTTGGCTTTTTGACGCCTTTTTGTCATGCCACAATCACAAGCATCCACAAACTATTTATACCGATCAGGATGTTGCTATGGGAAAGGCTATCACAGAGGTATTTACAGAAACTCGGCATGGCTTATGCACTTTTCACATAATGCAAAATGCAAACAAACATATAAATCGTCAGAAGACTAGTGATGGCTCTAATGTCCTTGCTGATTTTAGTGCTTGCATGTGTGAACATGAGGATGTGGAAAAATTTGAGGAAGTCTTTGCTGATATGAGGACAAAAGTTCGCAAAGGGACATGGTTGGATAGTGTTTATAAGTTGAAAGAGAAGTGGGCTGAATGCTTTATGAAGAATGCATACACATTAGGAATGCGAAGCACTCAATTGAGCGAGGGACTGAACAGTGATTTGAAGGAGTATTTAAATTGTGAATTAAACATTGTACGCTTTTTCCACCACTTTGACAGAGTTGTACAAGGGAAGCGAGATAAAGAGATCAAATCAGAGTATGAATCCAGGAAAAAATTGCCACGCATCTTAATGAGAATTCCTATGCTATTGCAAACAAATTTTGAAGAGTGCTTTGCGTTTGTTGATAATGCTCTTGAAACCCTTGGACAGCAAGTGGAACAAATGGTAGAAGTGAATACAAATATTCAGTCGAATTTAGAGACAGAGTTTGAGATACCTGAAAATGTCTCCCAAGCTATTGGCCTAAAGAAAAAAGAGACCCGGTGTAGCACATCGAAGCGAAAGAAGAATTGGGTTGACAAGCTACATAAAAAAAGAAAGAAAAGCCTAAGGTATGCTAAGAATGGGAATGAAGTAGCACATCCTGAGCCATTAGAAGAGGACATATTGGAGAATAGTACAAAAGAATCTCACCAGGATTTTGAATTTTTGGGTAGCTATACCCAGCTACTGGCGGGTGATTCAGATGGATATGAGTTATATTCTGAAGGATTTCATCAGTAG
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| Protein seq | MAFSDTEEAWNFWVTYGGRMGFDVRKKYHNKNQVTQKTTSARFVCSKQGFRGKDKRDNLTKHPRAETRIGCNVRMGLTLNRVNEKYEISDLEVMHNHILQTPETSHLMPSQRKITEVQAFEIEMADDTSIQPRIAHELAARHVGGSSNLGYTCLDQQNYLRTKRQKELKYGEAGSLLNYFKNKAIDNPSFHYAVKLDSEEQITNIFWAEMIIDYAHFGDVVTFDTTFGTNKESWPFGVFVGFNHFRETVVFGAALMYDETCDSFCWLFDAFLSCHNHKHPQTIYTDQDVAMGKAITEVFTETRHGLCTFHIMQNANKHINRQKTSDGSNVLADFSACMCEHEDVEKFEEVFADMRTKVRKGTWLDSVYKLKEKWAECFMKNAYTLGMRSTQLSEGLNSDLKEYLNCELNIVRFFHHFDRVVQGKRDKEIKSEYESRKKLPRILMRIPMLLQTNFEECFAFVDNALETLGQQVEQMVEVNTNIQSNLETEFEIPENVSQAIGLKKKETRCSTSKRKKNWVDKLHKKRKKSLRYAKNGNEVAHPEPLEEDILENSTKESHQDFEFLGSYTQLLAGDSDGYELYSEGFHQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0160900 | SBH | 1.734691 | 1.063069 | 2.168544 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05340 | SBH | 0.046403 | 0.000000 | 0.061437 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0160900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004070 | SBH | 0.312536 | 7.899008 | 2.719520 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004310 | SBH | 0.104955 | 1.747019 | 0.611161 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004310 | SBH | 0.716346 | 2.676292 | 3.569123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004140 | SBH | 0.159928 | 0.115408 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004330 | SBH | 3.795116 | 7.245476 | 5.781094 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0048100 | RBH | 0.00761 | 0 | 0.0312525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004320 | SBH | 0.354274 | 0.155665 | 0.494181 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0052600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004100 | SBH | 0.185384 | 0.078036 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004320 | SBH | 0.372168 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004330 | SBH | 0.962308 | 9.688815 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004220 | SBH | 0.297581 | 2.707383 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004150 | SBH | 0.225749 | 1.501999 | 1.770684 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004360 | SBH | 0.774960 | 3.750529 | 2.006551 |
