Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g05420 | OGI:12006710 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:2451775-2455622 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGGCAAACAAAGAGCAAGCAAGAGTTATATTAAACAAAATTCAAACATGGAGGATTTATATTACTAATCTTATTGATTCATTCATGGCACAAATAGATCCACATAACCTTTGAAAAGCAGCAGGCATTAACCTCTAGCATCTGACTCTGGCCAATGCATTCTACACCAAGAGCTTAACTGCAATTCTGCAATGGTGTCTCGCTGCTGCACATACTAGTTACATACTCATATGCTATTCTAACTTGGCTGGGGCAGTGAAGTCTGGATTGGTCCAAGAGGAGATGATGGTAAGTTGGGTGTAGGTGAGAGGCATGCTGGCAGCCTCCATGACGGCGATGGAGTCGACGCCCTTGGTGACAGGTTTACCATCTCCAGTGCTTGCATTCTGAGCTCCATTGGGTAGTCCTTCACACATCCAATCCTTGGACCAACCCCAGTGCTCCATTTCAGGGAGAGCCTGTGCCCGAGCTGATAGGATTTCGACTCTCCCTTCGATTTCACCCTCTCGAGAATTGCTTCCCGCGGGACATCAGCAGCTCTAGGGCTTTTCAGACCACCTGAGAGGGTTCTTTGGTAGGTTGGCTTTGTTTGCACTTTAGGAACGTTATCGCTTTCGGCACCTTCAGCTTGCGAAAACGGCTCAGATGCCTTATCTTCTTCTATCATGTTCTGAGGGAGAATCAATTGTGGAGGATTGGATTCCATGACGGTAGCAAGAGGGTTCTGTTTATTAGGCACTGGATCTTCATAATAGTCTTCGTTGGTGGATGAGCGCACCTGAATACACAAAAACAAGCTAGTTGAAGCCACCTGATATTTGCTTTCATAGGGGTATAATAGGTTTCATGGGCCTGAAAATGGCATACCTCAACTTCTTTCAGATCAACTCCATTCTCTTCAAGGAAGTTCATGAAGTTGGCGAGGTTCTCTGCACTTGGTTTATAGTGACCACTATAGGCCCAGATGGACTGAAATCAGAAAGTGATCATCAGAAAATAGCAGAAAGCAGCGATGCACCCAATCAACATGCAGGAGAACAAGACAAACAAATTATCAGAATGATTACCATGCGCTAGTAAGCAGAAGGATGGGAAAGTAATGGCCAAATGTTTAAAAGAATGTAGTTTGATCAAATATACAAAATTTAAAACTCGAGAATATGTTTCTAAAATACATCCAATCTTCAGGCATTTTCCAATCTCCCTCACAAAAGGAGGCAAGCCTGAAATAGTTATTCATGGCAATCCCAGAAACACGAAAGAATTGTTTGAAGTACTATTAGCAACTGAATCACCAATCTTTTTAGATCACAGATGTGGACACAATGTAAGAACATAAGCAGTCATATCAATAAAGGAAAACACTGAGCATAAATAGTAACATTGACAGGGCACATAGTTCTTCATCTCTACCTTGATAACTCCATTTTCTGCTGTAAACCTCCCAGCAGCTATGGTAGCACCTCCTGCTAAAAAGCTTGAGTGCTGGAATACACCTCTCTCTTTCTGGATAGAGAAAAATCAGCTTATGATAAATAAAAATAGCAATGGTAAACTAGCTGAACATAATTTAGTTCAACAGCAACAACATGAACAACTTGCCAGAATGGGAAAACTACCTTGCCAGCATAAAGTTTCTTTGTTGTGCTCATAACAAAAATCCATTTTGTCCCTTTAGGACCCTGGCTTGTATCAAGTGGTTCTCCAGAGTGCTTATGGATAATCTTCCCTTCTGTAACTATGTATTCATAGAGCTCACGCTCTTGCTGCAAAAATCCAGAAAATATAGATTTCATGTAACATTATTTCATTAAAATAAAATAGTTTCATGCTGCAACTTTCTACGGTGTCAAATATGAGGATGAGTTAGCATGAAAAACTGAAATATTGTGTGAATGGAAGTAGGCCAGGGTATGCTACTAGTTGCTAGGGTATTATATATTGATAGTCAGATCTGTGGATTGTGCACCTCTGGCTTTGCAGGGTGTATAGCTTAATTGCACAACAATATAATAATAGCAACACAGAGACATAGCACATGTTTTAAGTTCAATAAAATTCTAAAAGGTGCACATGACAAAAAGCCTTAACTCCTACTCCCTCCGTCCCAAAAAAAGGCAATCTAGGAGGGAATGTGACCCCTTGTTGTACTAGGAGGGAGTATGCAGCTCTTCTTAGTATTTCAACAGTATACGCGATTTTGAACTAAGGTAGGGAACAATTATAGACATGATCTTACCGGACCAAGATATTTTATGCATTGCTTCTTCAGGCGAGCTCTGGGACACTCAGGAAGGTCAACATCTTTTCCTTCCCCAATATCAAGCCTACATATGCATAAAGATTATTGAATTCAATGCACAACCAAACCACTCACTGAAATTTCTGAGATAAGAGTGCAACACTGAATCTATTACTCTGCCTGCAAATCTCTTGTGTCACAGACATCCAACCCATTTCTTCCAACAACATACTTTGCAAATGCAAACACACAAAACACAACCAACTTCTTACCAGTAGAAGAATGGCTGGCCGGCCTGGCTTTGGCACCAAACATCATAGTAGAAATGCAGATTGTGACCATATCTATGCCGTGGGTCAATCTATACAACAAGTAAACACTGGGTAATCAAGTTGCATTCACAAGGTTTGCACAATGAACTTAAATAAACATGGACAGAAGCTTCTATGACAGTAAGATATGGAGCTTTTATGATCGATGTTCACACACAACTGAAAAGGTCCAAGTCAACCCATAACCGAAAGCGGCCTCTTTTCACATTTGTGAAACAAAAGTAGTGATATCTAAAGCTAAAGAATCCTGGTACAGCTATACTAAAAAAACATCAGTTCATCTGTACGATTTGTACTCACAGCCTCGATCCAGTGCTGGAATGCCAGCTTCAGAGCCTTGCCGTCTCTGGATAAACCCTGACCCACCTGCATCAAAGCACAATTTTTTTACACAACAATTTCAAACACAAACACGCAGAAGAGCAGTCAAACAAACACAAACACACAGAAGAGCAGTCAATGAAACTTGGTCCAAGTAAAACCCAAAAGAAATCGCTTTCTCGAGGGTTTGTGGTGGTAGCGAAGTGGTTGCACAGAAAGGGAAGGAGAGGCCGAGATCGAGACCTTGGAGGCATTGAGGCTGACGCGGTTCCATCGCGACGCTACGGTCTCCGGTTTCGGGTCGTCGAAGAAGGAGACGGTGCTGTGGCTCAGCCGCGCGAAATCCAACGCTTGCCACCTTCATCAACAATCCAATCCACAAACCATCTCAATTAAAAATCAAGCAGTTTTTTTTAGATTATGGAATAAATTCCACGAAACCGAACAGTAAACAAATCCGGAGCAAGAAGCTTCAGAAGGATCAGTAAAAGAAAAGAAAAGAAAAGGGAAGGGAGAAGAAAGATTGGGGTAGGATCTGTGGAGAATTTACCAGAGCTCCTCGACGACGACGGCGGAGTCGGCGAGCTTGCGCCGGGTCCGGTAGCTCCGGTACACCTTCTGCAGCTTGGTCGCTGCCCCATCCTCTCCTCCGCCGCCGCCGGCCACCGGAGAGGAGACCTCAACCGGAGGATTCATCCAAGAAGAGGCCGCGTCCATGCGATCCGGAGCAGCGTCCACCCCCATTCTTGACTCCTCGAGGTTTAAGGTGGAGGGAGGAGGAAGACGAGTAGAAATGGCTGGACGGGTGGGCGAATTTAATCGGAGTTGCGTCGCTGTAAACAGTGAGATTAGGGAATAAAATACAGCAATTAAAGGGAGGTTATTATATTCTATTCTGAGAATTGATTTGTTCGCGCGAGGAAGAAGCAGCTGCCATAGCTACCTACCAATCTC
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| CDS seq | ATGGGGGTGGACGCTGCTCCGGATCGCATGGACGCGGCCTCTTCTTGGATGAATCCTCCGGTTGAGGTCTCCTCTCCGGTGGCCGGCGGCGGCGGAGGAGAGGATGGGGCAGCGACCAAGCTGCAGAAGGTGTACCGGAGCTACCGGACCCGGCGCAAGCTCGCCGACTCCGCCGTCGTCGTCGAGGAGCTCTGGTGGCAAGCGTTGGATTTCGCGCGGCTGAGCCACAGCACCGTCTCCTTCTTCGACGACCCGAAACCGGAGACCGTAGCGTCGCGATGGAACCGCGTCAGCCTCAATGCCTCCAAGGTGGGTCAGGGTTTATCCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTTGGTGCCAAAGCCAGGCCGGCCAGCCATTCTTCTACTGGCTTGATATTGGGGAAGGAAAAGATGTTGACCTTCCTGAGTGTCCCAGAGCTCGCCTGAAGAAGCAATGCATAAAATATCTTGGTCCGCAAGAGCGTGAGCTCTATGAATACATAGTTACAGAAGGGAAGATTATCCATAAGCACTCTGGAGAACCACTTGATACAAGCCAGGGTCCTAAAGGGACAAAATGGATTTTTGTTATGAGCACAACAAAGAAACTTTATGCTGGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGTGAAATCGAAGGGAGAGTCGAAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGAGCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCACTGGAGATGGTAAACCTGTCACCAAGGGCGTCGACTCCATCGCCGTCATGGAGGCTGCCAGCATGCCTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAG
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| Protein seq | MGVDAAPDRMDAASSWMNPPVEVSSPVAGGGGGEDGAATKLQKVYRSYRTRRKLADSAVVVEELWWQALDFARLSHSTVSFFDDPKPETVASRWNRVSLNASKVGQGLSRDGKALKLAFQHWIEAIDPRHRYGHNLHFYYDVWCQSQAGQPFFYWLDIGEGKDVDLPECPRARLKKQCIKYLGPQERELYEYIVTEGKIIHKHSGEPLDTSQGPKGTKWIFVMSTTKKLYAGKKERGVFQHSSFLAGGATIAAGRFTAENGVIKSIWAYSGHYKPSAENLANFMNFLEENGVDLKEVEVRSSTNEDYYEDPVPNKQNPLATVMESNPPQLILPQNMIEEDKASEPFSQAEGAESDNVPKVQTKPTYQRTLSGGLKSPRAADVPREAILERVKSKGESKSYQLGHRLSLKWSTGVGPRIGCVKDYPMELRMQALEMVNLSPRASTPSPSWRLPACLSPTPNLPSSPLGPIQTSLPQPS |
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| Function | IQ domain-containing protein IQM3 [UniProtKB/Swiss-Prot:Q9LFA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g05420 | LOC_Os12g05420.1 | Chr12 | 2451775 | 2455622 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGGTGGACGCTGCTCCGGATCGCATGGACGCGGCCTCTTCTTGGATGAATCCTCCGGTTGAGGTCTCCTCTCCGGTGGCCGGCGGCGGCGGAGGAGAGGATGGGGCAGCGACCAAGCTGCAGAAGGTGTACCGGAGCTACCGGACCCGGCGCAAGCTCGCCGACTCCGCCGTCGTCGTCGAGGAGCTCTGGTGGCAAGCGTTGGATTTCGCGCGGCTGAGCCACAGCACCGTCTCCTTCTTCGACGACCCGAAACCGGAGACCGTAGCGTCGCGATGGAACCGCGTCAGCCTCAATGCCTCCAAGGTGGGTCAGGGTTTATCCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTTGGTGCCAAAGCCAGGCCGGCCAGCCATTCTTCTACTGGCTTGATATTGGGGAAGGAAAAGATGTTGACCTTCCTGAGTGTCCCAGAGCTCGCCTGAAGAAGCAATGCATAAAATATCTTGGTCCGCAAGAGCGTGAGCTCTATGAATACATAGTTACAGAAGGGAAGATTATCCATAAGCACTCTGGAGAACCACTTGATACAAGCCAGGGTCCTAAAGGGACAAAATGGATTTTTGTTATGAGCACAACAAAGAAACTTTATGCTGGCAAGAAAGAGAGAGGTGTATTCCAGCACTCAAGCTTTTTAGCAGGAGGTGCTACCATAGCTGCTGGGAGGTTTACAGCAGAAAATGGAGTTATCAAGTCCATCTGGGCCTATAGTGGTCACTATAAACCAAGTGCAGAGAACCTCGCCAACTTCATGAACTTCCTTGAAGAGAATGGAGTTGATCTGAAAGAAGTTGAGGTGCGCTCATCCACCAACGAAGACTATTATGAAGATCCAGTGCCTAATAAACAGAACCCTCTTGCTACCGTCATGGAATCCAATCCTCCACAATTGATTCTCCCTCAGAACATGATAGAAGAAGATAAGGCATCTGAGCCGTTTTCGCAAGCTGAAGGTGCCGAAAGCGATAACGTTCCTAAAGTGCAAACAAAGCCAACCTACCAAAGAACCCTCTCAGGTGGTCTGAAAAGCCCTAGAGCTGCTGATGTCCCGCGGGAAGCAATTCTCGAGAGGGTGAAATCGAAGGGAGAGTCGAAATCCTATCAGCTCGGGCACAGGCTCTCCCTGAAATGGAGCACTGGGGTTGGTCCAAGGATTGGATGTGTGAAGGACTACCCAATGGAGCTCAGAATGCAAGCACTGGAGATGGTAAACCTGTCACCAAGGGCGTCGACTCCATCGCCGTCATGGAGGCTGCCAGCATGCCTCTCACCTACACCCAACTTACCATCATCTCCTCTTGGACCAATCCAGACTTCACTGCCCCAGCCAAGTTAG
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| Protein seq | MGVDAAPDRMDAASSWMNPPVEVSSPVAGGGGGEDGAATKLQKVYRSYRTRRKLADSAVVVEELWWQALDFARLSHSTVSFFDDPKPETVASRWNRVSLNASKVGQGLSRDGKALKLAFQHWIEAIDPRHRYGHNLHFYYDVWCQSQAGQPFFYWLDIGEGKDVDLPECPRARLKKQCIKYLGPQERELYEYIVTEGKIIHKHSGEPLDTSQGPKGTKWIFVMSTTKKLYAGKKERGVFQHSSFLAGGATIAAGRFTAENGVIKSIWAYSGHYKPSAENLANFMNFLEENGVDLKEVEVRSSTNEDYYEDPVPNKQNPLATVMESNPPQLILPQNMIEEDKASEPFSQAEGAESDNVPKVQTKPTYQRTLSGGLKSPRAADVPREAILERVKSKGESKSYQLGHRLSLKWSTGVGPRIGCVKDYPMELRMQALEMVNLSPRASTPSPSWRLPACLSPTPNLPSSPLGPIQTSLPQPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.198385 | 1.508306 | 1.162503 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0149900 | RBH | 1.762602 | 2.404678 | 4.611603 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05340 | RBH | 0.046403 | 0.000000 | 0.061437 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0149900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003360 | RBH | 0.404203 | 22.078854 | 6.482153 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003590 | RBH | 1.160976 | 5.705093 | 3.626132 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003600 | RBH | 1.110002 | 22.862724 | 5.338617 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003430 | RBH | 0.037933 | 1.547284 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003620 | RBH | 12.427039 | 24.584970 | 20.612120 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0043100 | RBH | 7.982045 | 30.4652875 | 53.2156505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003600 | RBH | 0.173707 | 1.595109 | 1.191631 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0046700 | RBH | 10.516277 | 28.748871 | 43.7705685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003390 | RBH | 0.315954 | 0.254035 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003600 | RBH | 1.665901 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003620 | RBH | 3.128473 | 27.999149 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003570 | RBH | 0.630079 | 0.0 | 1.457811 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003510 | RBH | 0.087955 | 8.598881 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003420 | RBH | 0.500374 | 5.465713 | 4.405539 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003660 | RBH | 0.756699 | 26.941547 | 8.326653 |
