Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g04570 | OGI:12005230 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:1934616-1936145 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATATGGCGCGGCTGGAACATGCACTCCCCCGCGGCGATCTTCACCGGCCGAGAGTGGGCAGCAAGACGGCGGAGCGGAGCTGCTCGGTGTGCCTCAAGAATTTCGAGGAGGACGACTACATCTGGTCGATGCCCTGCTCCCACACTTTCCATCAGCTCTGCGTCTTGGGTGACCGCTCTTGCAGGGTCTGTCACCCGGCTGCTCCCCCATCCACGGAGGAGAAACCGGAGGCCCCTCGGACTATTCATTGATTGAATGAATTCACGCGGAATCAGTGCTTGTTTAACTGATCAATGTTGTGGCCGTGCAACAAATCTGCATTTCTCTGAAAATTGCAAAAACCTGCTACTCTCTGAATAATCTGAATTTTTTGTCTCCAGTTTTCCTGGGAATCCCTTATGGAATATTTCTTTTTGTCTCAAGTTATCCTGTGAATCCCTTATGGAAATTTGTAACCGGATGTTTAAATTCACATAGTTATATATATATTTACTCCAATCTATTGGAGGGAGGTTGATTTTGATCAACTCAAGCCTAAGCAATACACCTATGTATATGATCTCTTTTTACAAATTGCCAAAAGGAGTCAAAGAAAGGTTGGATTATTTCAGAAAAAGATTTTTATGGCAGGAGGATCAGGGAATAAGAAAATATCATCTGGTTAATTGGCCTTTGGTTTGTTCACCTAGGGACCAGGGAGGTTTGGGAATTTTGGATCTAGAGATCATGAACTGTGCTATGTTGGGAAAATGGATATGGAGGTTGGAAAATGAGAGGGGTTGGTGGCAGGATATTCTCACAAAAAAGTACTGTCACAACAAAGTTTTGTCAGGTTTGAAAGTGAAACCTGGAGTCTCTCATTTCTGGCAAGGAATTATGGATGTGAAAGAAATGTTTTATAAATTTTGTACTAAAGTAGTTGGCAATGGAAGGAATACTTTGTTTTGGGAAGATAATTGGATAGGAGGTAAACCTTTGGCTGAACAGTTCCCTGATCTGTATAATATTACTTTGACAAAAAAGATTACTGTGGCAAATGTGAAACAAGGGGGGATTGACTCTATTAAATTCAGAAGGGATGTCCTGGGGAATAAACTGAGGAATTGGCTGAAAATTAAACAATTCTGGGGTGATTTGGTTCTGGAAGATGGAACCAAAGATACACTCCGGTGGAGTTTGACCAAAGATGGGAAATTCACTGTGAATTCCTTTTACAAAGCTCTGAAGATGCAACAGGTGATTTTCCCGCATAAAAAGTTATGGGGTTTCAAAGTGCCTTTGAAAATCAAAATTTTTATTTGGCTATTTACAAAAAACAAGATTCTCACAAAGGACAATCTTTTCAAAAGGGGCTGGAGAAAAGGGAAGGCTAATTGCCAATTCTGTGATCAAACAGAAACTTTACAACACCTCTTTTTTTATTGCCCTTTAGCTAGACTGTTATGGAATATTGTGAAATGTGCTCTCAATATAAATCCTGTGTTGAATAGACAAGATCTGTTTGGATCTTGGATGAACAAGATTGA
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| CDS seq | ATGGATATGGCGCGGCTGGAACATGCACTCCCCCGCGGCGATCTTCACCGGCCGAGAGTGGGCAGCAAGACGGCGGAGCGGAGCTGCTCGGTGTGCCTCAAGAATTTCGAGGAGGACGACTACATCTGGGACCAGGGAGGTTTGGGAATTTTGGATCTAGAGATCATGAACTGTGCTATGTTGGGAAAATGGATATGGAGGTTGGAAAATGAGAGGGGTTGGTGGCAGGATATTCTCACAAAAAAGTACTGTCACAACAAAGTTTTGTCAGGTTTGAAAGTGAAACCTGGAGTCTCTCATTTCTGGCAAGGAATTATGGATGTGAAAGAAATGTTTTATAAATTTTGTACTAAAGTAGTTGGCAATGGAAGGAATACTTTGTTTTGGGAAGATAATTGGATAGGAGGTAAACCTTTGGCTGAACAGTTCCCTGATCTGTATAATATTACTTTGACAAAAAAGATTACTGTGGCAAATGTGAAACAAGGGGGGATTGACTCTATTAAATTCAGAAGGGATGTCCTGGGGAATAAACTGAGGAATTGGCTGAAAATTAAACAATTCTGGGGTGATTTGGTTCTGGAAGATGGAACCAAAGATACACTCCGGTGGAGTTTGACCAAAGATGGGAAATTCACTGTGAATTCCTTTTACAAAGCTCTGAAGATGCAACAGACAAGATCTGTTTGGATCTTGGATGAACAAGATTGA
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| Protein seq | MDMARLEHALPRGDLHRPRVGSKTAERSCSVCLKNFEEDDYIWDQGGLGILDLEIMNCAMLGKWIWRLENERGWWQDILTKKYCHNKVLSGLKVKPGVSHFWQGIMDVKEMFYKFCTKVVGNGRNTLFWEDNWIGGKPLAEQFPDLYNITLTKKITVANVKQGGIDSIKFRRDVLGNKLRNWLKIKQFWGDLVLEDGTKDTLRWSLTKDGKFTVNSFYKALKMQQTRSVWILDEQD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g04570 | LOC_Os12g04570.1 | Chr12 | 1934616 | 1936145 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATATGGCGCGGCTGGAACATGCACTCCCCCGCGGCGATCTTCACCGGCCGAGAGTGGGCAGCAAGACGGCGGAGCGGAGCTGCTCGGTGTGCCTCAAGAATTTCGAGGAGGACGACTACATCTGGGACCAGGGAGGTTTGGGAATTTTGGATCTAGAGATCATGAACTGTGCTATGTTGGGAAAATGGATATGGAGGTTGGAAAATGAGAGGGGTTGGTGGCAGGATATTCTCACAAAAAAGTACTGTCACAACAAAGTTTTGTCAGGTTTGAAAGTGAAACCTGGAGTCTCTCATTTCTGGCAAGGAATTATGGATGTGAAAGAAATGTTTTATAAATTTTGTACTAAAGTAGTTGGCAATGGAAGGAATACTTTGTTTTGGGAAGATAATTGGATAGGAGGTAAACCTTTGGCTGAACAGTTCCCTGATCTGTATAATATTACTTTGACAAAAAAGATTACTGTGGCAAATGTGAAACAAGGGGGGATTGACTCTATTAAATTCAGAAGGGATGTCCTGGGGAATAAACTGAGGAATTGGCTGAAAATTAAACAATTCTGGGGTGATTTGGTTCTGGAAGATGGAACCAAAGATACACTCCGGTGGAGTTTGACCAAAGATGGGAAATTCACTGTGAATTCCTTTTACAAAGCTCTGAAGATGCAACAGACAAGATCTGTTTGGATCTTGGATGAACAAGATTGA
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| Protein seq | MDMARLEHALPRGDLHRPRVGSKTAERSCSVCLKNFEEDDYIWDQGGLGILDLEIMNCAMLGKWIWRLENERGWWQDILTKKYCHNKVLSGLKVKPGVSHFWQGIMDVKEMFYKFCTKVVGNGRNTLFWEDNWIGGKPLAEQFPDLYNITLTKKITVANVKQGGIDSIKFRRDVLGNKLRNWLKIKQFWGDLVLEDGTKDTLRWSLTKDGKFTVNSFYKALKMQQTRSVWILDEQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.105154 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0140000 | RBH | 0.0 | 0.0 | 1.848407 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05030 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0140000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002710 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002940 | SBH | 0.0 | 0.0 | 0.516591 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002950 | SBH | 0.0 | 0.0 | 0.931639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002930 | SBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0051700 | SBH | 0.077021 | 0.6014095 | 0.6769005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003000 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008700 | SBH | 0.2168345 | 0.215669 | 0.2947765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002880 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003010 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002990 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002920 | RBH | 0.000000 | 0.0 | 0.590281 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003010 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002930 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002940 | SBH | 0.0 | 0.0 | 0.000000 |
