Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g01880 | OGI:12001350 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:515426-517055 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCCATCCCAGGGGTTGCTAAGGCTCCGCCGCCGCCGTTGTTACTGCTGCCTTCTTCAATTCCGGTGTAGATCTGGGGAGACCCATCATCAGCCTTGCAGATCAGCTTTCCATCAAACTTGCTCGACGATCGGCCGCCGGTAATCTGCATCCTGATTGTCCTAGATTGACAAAGGCATATCTGCGATCCTAGATTGAGAGCACACCCCACCCTAGTGCTGGTGCTGAATTTGCTCTTGCTCTTTCCATTGCATTGCATTTCGTTTCGTTTCGTTTTGTTTTGTTTTCCCTAGATGTATCTCTCTTTGAGCAATAATCAATCCTATGCTGGCCTTAAGTTGTAGTAGTAGTTGTTGTTGTTGTTGAGAAGGGATGGGCATGGCCCGACGATTTCTGAACCTGGTGGTGGAGAGCAATCGCGATGGCCTGTATTCGCTGCGGCGCGTGCCTGCGAATCGCCTCTTGTACCCATCAAGAAGAGCAGCAGAGGCAGCAACGGCCAAGTCGGAAGAAGAAGTGAAGGCGTACAAGGAGCATGAGGGTAGGAGGCATCCAGGCCTGCACTTTATGGAGCGATTCGGGCAGTTTCCGAGTCCGATGATCAACTTCCAGGCGTCCCCGACATACGAGCACAGCAGCAGGAATCTGGAGTTGGCCACCCTCCTCGGCGACGATGAGAACAAGATCCTCACCGTGGATAACAGCGGGCACACCCTGCTATTCGACACCGTCTCCTACTCCGTGGTGAAGTTCCCCTCCCTCAAATCCAACAAGGGCCGCGGCGCCATCTCCCTCCCTGTCGACCGTGCCGCTCCCCAAGAACCTGACGGCCTCTACGTCATGAGCCCCACCGCCGATCCTCTCACCAGCGATTGCTGCTTCGAGGTGCTCAACTACGGCTCTAGGGGCTTCCATGAGAGGGCCCCTTCCTGGCTCCCTCTGCCGCCGCTCCCCTCTGCCAGCTACACCCACGCCAACCTTGTCTCCTGTACGGTGGTTGGCTCCACCATCTTTGTTTCTTCCACCGCCCCCGAATGCGGCACTCATGCCTTCAACACACTCACCGGTGAATGGCACCATGTTGGCTACTGGACGATGCCGTTTTATGGCAGAGCTCAGTATGTGCCCGACCTCAATCTCTGGTTTGGACTCTCTGCCCGACACCCTTACAACCTCTGTGCTATTGATCTCTCCAACGCCCATCTGCACCCACCCGATGTCCTGCAAACTTGGCTTGACCTCGACATACCTAAATCCTGGTCGCCCTCCAAGCTCAACCTCATCAGCCTCGGCTCTGGCAGATTTTGTGCTGCCAAGATCTTTCGTTCCAATATGCCTGCTGCTGCTGCTTTCCTAGATGATTCCGATGACGACGACGACTATACTGTTGACTCTCATGTCATCCCTACGGATTTTGCTGTCTTCACTGGCCTGCATATGGTGCGCCGCAATGGTAAGGATGGTCAAGAGCAGATCCAAATGATCAAGCACAAGTCCATCTTCTACACCTTCAACAGCTATAATATTGAATGGGTTATCTGAATCTAACCTAGCATTGTTCCATAGAAGCAGGATGTGTAAAAAATGCACAGATATGGTAAGGGATTATAACACTACGCTAATTTTAATC
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| CDS seq | ATGGGCATGGCCCGACGATTTCTGAACCTGGTGGTGGAGAGCAATCGCGATGGCCTGTATTCGCTGCGGCGCGTGCCTGCGAATCGCCTCTTGTACCCATCAAGAAGAGCAGCAGAGGCAGCAACGGCCAAGTCGGAAGAAGAAGTGAAGGCGTACAAGGAGCATGAGGGTAGGAGGCATCCAGGCCTGCACTTTATGGAGCGATTCGGGCAGTTTCCGAGTCCGATGATCAACTTCCAGGCGTCCCCGACATACGAGCACAGCAGCAGGAATCTGGAGTTGGCCACCCTCCTCGGCGACGATGAGAACAAGATCCTCACCGTGGATAACAGCGGGCACACCCTGCTATTCGACACCGTCTCCTACTCCGTGGTGAAGTTCCCCTCCCTCAAATCCAACAAGGGCCGCGGCGCCATCTCCCTCCCTGTCGACCGTGCCGCTCCCCAAGAACCTGACGGCCTCTACGTCATGAGCCCCACCGCCGATCCTCTCACCAGCGATTGCTGCTTCGAGGTGCTCAACTACGGCTCTAGGGGCTTCCATGAGAGGGCCCCTTCCTGGCTCCCTCTGCCGCCGCTCCCCTCTGCCAGCTACACCCACGCCAACCTTGTCTCCTGTACGGTGGTTGGCTCCACCATCTTTGTTTCTTCCACCGCCCCCGAATGCGGCACTCATGCCTTCAACACACTCACCGGTGAATGGCACCATGTTGGCTACTGGACGATGCCGTTTTATGGCAGAGCTCAGTATGTGCCCGACCTCAATCTCTGGTTTGGACTCTCTGCCCGACACCCTTACAACCTCTGTGCTATTGATCTCTCCAACGCCCATCTGCACCCACCCGATGTCCTGCAAACTTGGCTTGACCTCGACATACCTAAATCCTGGTCGCCCTCCAAGCTCAACCTCATCAGCCTCGGCTCTGGCAGATTTTGTGCTGCCAAGATCTTTCGTTCCAATATGCCTGCTGCTGCTGCTTTCCTAGATGATTCCGATGACGACGACGACTATACTGTTGACTCTCATGTCATCCCTACGGATTTTGCTGTCTTCACTGGCCTGCATATGGTGCGCCGCAATGGTAAGGATGGTCAAGAGCAGATCCAAATGATCAAGCACAAGTCCATCTTCTACACCTTCAACAGCTATAATATTGAATGGGTTATCTGA
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| Protein seq | MGMARRFLNLVVESNRDGLYSLRRVPANRLLYPSRRAAEAATAKSEEEVKAYKEHEGRRHPGLHFMERFGQFPSPMINFQASPTYEHSSRNLELATLLGDDENKILTVDNSGHTLLFDTVSYSVVKFPSLKSNKGRGAISLPVDRAAPQEPDGLYVMSPTADPLTSDCCFEVLNYGSRGFHERAPSWLPLPPLPSASYTHANLVSCTVVGSTIFVSSTAPECGTHAFNTLTGEWHHVGYWTMPFYGRAQYVPDLNLWFGLSARHPYNLCAIDLSNAHLHPPDVLQTWLDLDIPKSWSPSKLNLISLGSGRFCAAKIFRSNMPAAAAFLDDSDDDDDYTVDSHVIPTDFAVFTGLHMVRRNGKDGQEQIQMIKHKSIFYTFNSYNIEWVI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g01880 | LOC_Os12g01880.1 | Chr12 | 515426 | 517055 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGCATGGCCCGACGATTTCTGAACCTGGTGGTGGAGAGCAATCGCGATGGCCTGTATTCGCTGCGGCGCGTGCCTGCGAATCGCCTCTTGTACCCATCAAGAAGAGCAGCAGAGGCAGCAACGGCCAAGTCGGAAGAAGAAGTGAAGGCGTACAAGGAGCATGAGGGTAGGAGGCATCCAGGCCTGCACTTTATGGAGCGATTCGGGCAGTTTCCGAGTCCGATGATCAACTTCCAGGCGTCCCCGACATACGAGCACAGCAGCAGGAATCTGGAGTTGGCCACCCTCCTCGGCGACGATGAGAACAAGATCCTCACCGTGGATAACAGCGGGCACACCCTGCTATTCGACACCGTCTCCTACTCCGTGGTGAAGTTCCCCTCCCTCAAATCCAACAAGGGCCGCGGCGCCATCTCCCTCCCTGTCGACCGTGCCGCTCCCCAAGAACCTGACGGCCTCTACGTCATGAGCCCCACCGCCGATCCTCTCACCAGCGATTGCTGCTTCGAGGTGCTCAACTACGGCTCTAGGGGCTTCCATGAGAGGGCCCCTTCCTGGCTCCCTCTGCCGCCGCTCCCCTCTGCCAGCTACACCCACGCCAACCTTGTCTCCTGTACGGTGGTTGGCTCCACCATCTTTGTTTCTTCCACCGCCCCCGAATGCGGCACTCATGCCTTCAACACACTCACCGGTGAATGGCACCATGTTGGCTACTGGACGATGCCGTTTTATGGCAGAGCTCAGTATGTGCCCGACCTCAATCTCTGGTTTGGACTCTCTGCCCGACACCCTTACAACCTCTGTGCTATTGATCTCTCCAACGCCCATCTGCACCCACCCGATGTCCTGCAAACTTGGCTTGACCTCGACATACCTAAATCCTGGTCGCCCTCCAAGCTCAACCTCATCAGCCTCGGCTCTGGCAGATTTTGTGCTGCCAAGATCTTTCGTTCCAATATGCCTGCTGCTGCTGCTTTCCTAGATGATTCCGATGACGACGACGACTATACTGTTGACTCTCATGTCATCCCTACGGATTTTGCTGTCTTCACTGGCCTGCATATGGTGCGCCGCAATGGTAAGGATGGTCAAGAGCAGATCCAAATGATCAAGCACAAGTCCATCTTCTACACCTTCAACAGCTATAATATTGAATGGGTTATCTGA
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| Protein seq | MGMARRFLNLVVESNRDGLYSLRRVPANRLLYPSRRAAEAATAKSEEEVKAYKEHEGRRHPGLHFMERFGQFPSPMINFQASPTYEHSSRNLELATLLGDDENKILTVDNSGHTLLFDTVSYSVVKFPSLKSNKGRGAISLPVDRAAPQEPDGLYVMSPTADPLTSDCCFEVLNYGSRGFHERAPSWLPLPPLPSASYTHANLVSCTVVGSTIFVSSTAPECGTHAFNTLTGEWHHVGYWTMPFYGRAQYVPDLNLWFGLSARHPYNLCAIDLSNAHLHPPDVLQTWLDLDIPKSWSPSKLNLISLGSGRFCAAKIFRSNMPAAAAFLDDSDDDDDYTVDSHVIPTDFAVFTGLHMVRRNGKDGQEQIQMIKHKSIFYTFNSYNIEWVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.371285 | 1.370080 | 0.282399 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0109600 | RBH | 0.549033 | 2.037041 | 1.097040 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02220 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000570 | RBH | 0.337827 | 0.0 | 2.262063 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000760 | RBH | 0.079300 | 0.0 | 0.641030 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000730 | RBH | 1.083029 | 0.0 | 2.481674 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000590 | RBH | 0.042272 | 0.072823 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000690 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0008400 | RBH | 0 | 0 | 0.015304 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000660 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000710 | RBH | 0.072880 | 0.830458 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000600 | RBH | 0.285645 | 0.522609 | 0.616085 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000760 | RBH | 0.292820 | 1.475902 | 3.308470 |
