Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g01080 | OGI:12000110 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:42336-42868 | ||||||||
| Gene Symbol | CCT39, OsCCT39, OsCMF13, CMF13, OsRpp30-L, Rpp30-L | ||||||||||
| DNA seq | ATGTATCATCATCAGGGCTGGAGCTCATCATCATCTTCGTCGTCGTCGCTCCGCCGGGTGTTGAGCACCGGAGGAGGCCTGGTGGAGGAGGAGCGGCGGGAGCGCATTGACAAGTACCGGAGCAAGCGCAATCAACGCAATTTCGACAAGAAGATCACCGTAACTCTTTCATTTTAATCATCAATTAACACAGATCCTTCTCTCTCATTACTTAGCTAATTAATGTGCATGGTTGCTTTAATTAATTGCAGTACGCTTGCCGGAAGACGCTCGCGGACAGCCGGCCGAGGGTGAAGGGCCGCTTCGCCCGTAACTCCTCCGACGACGCTGCTGCTGCTGCTGCAGCTCAAGTCGAGGTGTCGCCGGCGACGAATAATAATGTGCCGGAGTGGTGGCCGGCAGTGCAGGAGGCGCTGGCCAGGCAGGAGCAGGAGGCGGCTGGCCTCCATCTCTGCGACACCGCCGACGATGACCTGCTAGCCGCCTACCTCGGCGTCTCCTCCATCGATCTCTACTCACCCCGCGGCCACTGA
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| CDS seq | ATGTATCATCATCAGGGCTGGAGCTCATCATCATCTTCGTCGTCGTCGCTCCGCCGGGTGTTGAGCACCGGAGGAGGCCTGGTGGAGGAGGAGCGGCGGGAGCGCATTGACAAGTACCGGAGCAAGCGCAATCAACGCAATTTCGACAAGAAGATCACCTACGCTTGCCGGAAGACGCTCGCGGACAGCCGGCCGAGGGTGAAGGGCCGCTTCGCCCGTAACTCCTCCGACGACGCTGCTGCTGCTGCTGCAGCTCAAGTCGAGGTGTCGCCGGCGACGAATAATAATGTGCCGGAGTGGTGGCCGGCAGTGCAGGAGGCGCTGGCCAGGCAGGAGCAGGAGGCGGCTGGCCTCCATCTCTGCGACACCGCCGACGATGACCTGCTAGCCGCCTACCTCGGCGTCTCCTCCATCGATCTCTACTCACCCCGCGGCCACTGA
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| Protein seq | MYHHQGWSSSSSSSSSLRRVLSTGGGLVEEERRERIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNSSDDAAAAAAAQVEVSPATNNNVPEWWPAVQEALARQEQEAAGLHLCDTADDDLLAAYLGVSSIDLYSPRGH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g01080 | LOC_Os12g01080.1 | Chr12 | 42336 | 42868 | + | MSU_osa1r7 | ||
| CDS seq | ATGTATCATCATCAGGGCTGGAGCTCATCATCATCTTCGTCGTCGTCGCTCCGCCGGGTGTTGAGCACCGGAGGAGGCCTGGTGGAGGAGGAGCGGCGGGAGCGCATTGACAAGTACCGGAGCAAGCGCAATCAACGCAATTTCGACAAGAAGATCACCTACGCTTGCCGGAAGACGCTCGCGGACAGCCGGCCGAGGGTGAAGGGCCGCTTCGCCCGTAACTCCTCCGACGACGCTGCTGCTGCTGCTGCAGCTCAAGTCGAGGTGTCGCCGGCGACGAATAATAATGTGCCGGAGTGGTGGCCGGCAGTGCAGGAGGCGCTGGCCAGGCAGGAGCAGGAGGCGGCTGGCCTCCATCTCTGCGACACCGCCGACGATGACCTGCTAGCCGCCTACCTCGGCGTCTCCTCCATCGATCTCTACTCACCCCGCGGCCACTGA
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| Protein seq | MYHHQGWSSSSSSSSSLRRVLSTGGGLVEEERRERIDKYRSKRNQRNFDKKITYACRKTLADSRPRVKGRFARNSSDDAAAAAAAQVEVSPATNNNVPEWWPAVQEALARQEQEAAGLHLCDTADDDLLAAYLGVSSIDLYSPRGH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.280070 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0101000 | RBH | 1.465329 | 1.124493 | 7.483492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01100 | SBH | 0.0 | 0.0 | 0.316774 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0101000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000100 | RBH | 0.864430 | 0.323519 | 4.320218 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000100 | SBH | 0.084239 | 0.000000 | 0.236503 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000090 | SBH | 1.004004 | 0.583135 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000090 | SBH | 6.761672 | 17.205074 | 24.933376 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0001000 | SBH | 2.8895515 | 12.8026665 | 13.413471 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000100 | SBH | 0.480348 | 0.858432 | 2.299159 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0001000 | SBH | 2.919639 | 15.6722545 | 9.4030975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000090 | SBH | 0.715408 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000100 | SBH | 16.824598 | 33.900127 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000090 | SBH | 1.231448 | 0.0 | 1.942365 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000090 | SBH | 0.415580 | 6.552434 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000100 | SBH | 0.374903 | 2.867491 | 1.614443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000090 | SBH | 2.049544 | 12.632210 | 4.320745 |
