Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g47660 | OGI:11083620 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:28779820-28780931 | ||||||||
| Gene Symbol | Os_F0650 | ||||||||||
| DNA seq | ATGGATCAAGCCGACCGCCGCCGCCGCCGCCGCCACCAGGAGCTTGAACATGCGGCGGCTGATGATGATTACGGTGGTGCCTCCTCTTATCACCTCCCGCTGCCCTCCGGATTCAAGGTACATTTATCTTGTCATTTTTTATTTTTAAAATTTTTTCATAACTCTTTAGTTGACATACAATAAATGGTTTAAATTTTTCACAACTATTTTTTATAATTATTTAGATGCCATGCATCTATTTGAGTATTTGAGTTTTGTTTGTTACTTGTACAAGTTAAATTTGTACTTGTATGCTTGTGAAGTGATATATTATATATTGATCTATCTTATCAATTTTTTTGAAAATTTTTTATAACTTTAGTTGACATGCAATAAACGGGTAGATATCCACTCGAGTTATTAGAATCCATCTTATCTTATACAATTGATCAAACCAATAATCCACTTCGTTGTGTGACTGTGATATAGTATGCTTTGCTGTTGCTTATACAGATTCCCCGTTTGCCTACTACTGCCTGCGCCTTGATGAGGAGGAAGAAGACGCACAGAACGAAGCTCTCGTTGGAGAAGCTCAGACTACCGTCCTTGCTATATAGGAGTATATTCATTGGTAAAGTGAGCTGATAGAATGTTAATCGACACAGCTGTTTTGTATGTAGGACCTGCTATGCAAAGTGGTATCACAACTCACATTAAAAGAAGCAGGGAAGACAAGCATACTTTCTTCTCGGTGGAAAGATCGATGGACATATCATTCTAATCTCTGTTTTGATCACTCCGAGTTTCCAAGATACACCGCAGACAGATTTATCAACTATGTTAACCATGTGTTGCAGCAGCACAGCTTCTTGGCGGTGGACAGGTTCGAGATCAGGTTTCCACTCCAGAAACAGCAGACAAAACATGTGGATAGCTGGGTTGCTTTTGCCTCTGCATCAAGAGCAAAACATTTTGTGCTTGATTTGAGCCCAGCTGTGCACACCAATCACCAAAGTGAAGAGCACATGTATGTATTTCCAGTTGATCTTCTCGATGGTCAAAATGGCTCTCCTATCATATCTCTCCGGCTCGGCCTTGTGTGCTTAAAGCTTCCTTCTGATTTTCTTGCATAG
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| CDS seq | ATGGATCAAGCCGACCGCCGCCGCCGCCGCCGCCACCAGGAGCTTGAACATGCGGCGGCTGATGATGATTACGGTGGTGCCTCCTCTTATCACCTCCCGCTGCCCTCCGGATTCAAGATTCCCCGTTTGCCTACTACTGCCTGCGCCTTGATGAGGAGGAAGAAGACGCACAGAACGAAGCTCTCGTTGGAGAAGCTCAGACTACCGTCCTTGCTATATAGGAGTATATTCATTGGTAAAGACCTGCTATGCAAAGTGGTATCACAACTCACATTAAAAGAAGCAGGGAAGACAAGCATACTTTCTTCTCGGTGGAAAGATCGATGGACATATCATTCTAATCTCTGTTTTGATCACTCCGAGTTTCCAAGATACACCGCAGACAGATTTATCAACTATGTTAACCATGTGTTGCAGCAGCACAGCTTCTTGGCGGTGGACAGGTTCGAGATCAGGTTTCCACTCCAGAAACAGCAGACAAAACATGTGGATAGCTGGGTTGCTTTTGCCTCTGCATCAAGAGCAAAACATTTTGTGCTTGATTTGAGCCCAGCTGTGCACACCAATCACCAAAGTGAAGAGCACATGTATGTATTTCCAGTTGATCTTCTCGATGGTCAAAATGGCTCTCCTATCATATCTCTCCGGCTCGGCCTTGTGTGCTTAAAGCTTCCTTCTGATTTTCTTGCATAG
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| Protein seq | MDQADRRRRRRHQELEHAAADDDYGGASSYHLPLPSGFKIPRLPTTACALMRRKKTHRTKLSLEKLRLPSLLYRSIFIGKDLLCKVVSQLTLKEAGKTSILSSRWKDRWTYHSNLCFDHSEFPRYTADRFINYVNHVLQQHSFLAVDRFEIRFPLQKQQTKHVDSWVAFASASRAKHFVLDLSPAVHTNHQSEEHMYVFPVDLLDGQNGSPIISLRLGLVCLKLPSDFLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g47660 | LOC_Os11g47660.1 | Chr11 | 28779820 | 28780931 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATCAAGCCGACCGCCGCCGCCGCCGCCGCCACCAGGAGCTTGAACATGCGGCGGCTGATGATGATTACGGTGGTGCCTCCTCTTATCACCTCCCGCTGCCCTCCGGATTCAAGATTCCCCGTTTGCCTACTACTGCCTGCGCCTTGATGAGGAGGAAGAAGACGCACAGAACGAAGCTCTCGTTGGAGAAGCTCAGACTACCGTCCTTGCTATATAGGAGTATATTCATTGGTAAAGACCTGCTATGCAAAGTGGTATCACAACTCACATTAAAAGAAGCAGGGAAGACAAGCATACTTTCTTCTCGGTGGAAAGATCGATGGACATATCATTCTAATCTCTGTTTTGATCACTCCGAGTTTCCAAGATACACCGCAGACAGATTTATCAACTATGTTAACCATGTGTTGCAGCAGCACAGCTTCTTGGCGGTGGACAGGTTCGAGATCAGGTTTCCACTCCAGAAACAGCAGACAAAACATGTGGATAGCTGGGTTGCTTTTGCCTCTGCATCAAGAGCAAAACATTTTGTGCTTGATTTGAGCCCAGCTGTGCACACCAATCACCAAAGTGAAGAGCACATGTATGTATTTCCAGTTGATCTTCTCGATGGTCAAAATGGCTCTCCTATCATATCTCTCCGGCTCGGCCTTGTGTGCTTAAAGCTTCCTTCTGATTTTCTTGCATAG
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| Protein seq | MDQADRRRRRRHQELEHAAADDDYGGASSYHLPLPSGFKIPRLPTTACALMRRKKTHRTKLSLEKLRLPSLLYRSIFIGKDLLCKVVSQLTLKEAGKTSILSSRWKDRWTYHSNLCFDHSEFPRYTADRFINYVNHVLQQHSFLAVDRFEIRFPLQKQQTKHVDSWVAFASASRAKHFVLDLSPAVHTNHQSEEHMYVFPVDLLDGQNGSPIISLRLGLVCLKLPSDFLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024810 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024810 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024300 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024370 | RBH | 0.037455 | 0.245791 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024640 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0450300 | SBH | 1.617421 | 2.082239 | 1.412733 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025180 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0446200 | RBH | 0.0066845 | 0 | 0.002385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0025060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024150 | RBH | 0.0 | 0.0 | 0.163732 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024550 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024540 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024740 | RBH | 0.0 | 0.0 | 0.0 |
