Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g45924 | OGI:11081610 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:27789618-27791943 | ||||||||
| Gene Symbol | WRKY41, OsWRKY41 | ||||||||||
| DNA seq | TCAGCTCACCAAGGCTCCATAGATTCTCCGCTGAGTTACAGCTGAGATCAAAATATTCAATTGTACGAAGCGATGTCATGTGGACAATTCCACTGGGCAGGTTTGTCTTAGCAGGAAGAGTAAGATGCAGCAAACCTGGCAAATAAATGTCTGTTGGAACTTCACTTATTTTTCCATCTATTTTCAGTGTCTCCAAATATGGTAGACCTTGCAACCGGGTTGGCAGTTTTACGGTGGCATTAGAGGTGACCTTCAAATATCTCAGTCGGACAAGTTCTGAAATTTTAGTGAGATCAACAATGCCGGTGCTATCCTCATCACCCAAAAAATGTAGAAATAAAACTTTAATAAGTCGAAACTCCATAATGAAAGGCATATACTTCAAGACCCCAAAGAAGGCAATTGTCCGAACTTGGAACAATCTCATATTAGTAGGTGGAGGTGCATCTTCTACATTATTGAAGTGAATAGATAATCGTCGAACCTTGTCAGCAAATCTTATAGTTGCCTGTGAATGGTCTATTGCAATAATAAAATTCTCTTCTATTGACTTGTATGTAACAAAATTGAGTACAATATGGTGAACTACACAGGACAAAACCTCACCGCTGTCATCGATATGGACAGGCTGGATGATTTTTCTACCAACAAGCTCATCAAAATAGCCCCTTGAAATTTCTTCCTTGTCATGCTCTTCAGTTGCACAGATAAAACCTTCAGCTATCCATTGATTCACTAAATCATCCTTCCAAATTATGTGATCTCCTTGATACATACTAAGATACAACATGCATGCCTTCAAATGCTGAGGAAGATTGTTGTAACAAAGGTTCAGTAGTTGTTTCATCCCTTCCAAAGTAGGATTTGCCATCAAACTGTAACCTAAGGATTTGTTTATATAATCCCATTGTTCCAGTTTATCAAGCTGGCTTGCTAAAAGACTTGCAACAGTGACAATAGCTAGCGGCAAGCCACCACATTTCCTTACAATATCATATAATGTTTCACTGACTTCTGGAGGACACTTAGAATGAGAGCCAAAGACTATACTGAATAATAGTTTTCTTGAGTCATCCTCACCAAAAGGTATCATCTTGAAAATAAATTTCAAGTCATAACTACAAGATTGCAAAGCTAGATCTTCAATTTCTGTTGTGGTCAGTATTCTGCTAGACTTGTTACCCTCCGGCAAAGCGCACTTAATAATATCCCATGTGGATGTAGCCCATAGATCATCAATTACGATCAAGAACCTGCGATTAAGGGCAGAATTTTTAACATAACAAAATGGAAGCTCTAATTATTGTTAGTGCCTGCTAGAATTTGCATGATGAAATGGTAAACATTAGGTCTAAGGTGTATTTTTCTCTCGATTTTGTACACTATGCAACTTATAACAGCCATCTTGAGGCCAAAAACGATTAAAAGGCATGGCTTGATCCAACAAATAGACTATTATAACTCATAGATTGGGCCTATGTGTGCGGGATGGGGGAGGAGGTTGAATAAGCATATAGGATTACAAATCAGGCACCCAGCCCTAAGGCCCCATTTTGCAAATGGATTATAAGAGGTGGGATTAGGATAGGAAATGAGTGGTTGTTAAGATAAAATAAGGTGACAAGAATGGATGGCTAGGGTTAAACCTTACCCTTTGATGGGTGGGATATCTTTTGCCAAATGAGGCCTAATTGTGGCTAAGGCTGATATCAGGGATAGCAAGCAACAGACACACCCCCTGCTATTGTTATGTTACACATTACATATAATTCAGTAGTATAGACTTCAGAGGAGCCGGTATCTGTCTTTCTTATCGATCTGCCATGATTCAATGAAATATTGAACCCATGTATTCAATACTTGACTAAAAAATTCTGTTTATACTTATGAAGATAACTTTAGTATCAGTATAACAGGCAAATGCACTGATTAACAATTAGTAGCAAACAGAAACAAAAAAAAGAGAGGAATAAATCAGTTTTACACCCCGAAAACATTGTACGTACCTCTTATCTTGCAGATATGTCCTGATACTGGAAATCAGGCTATGCACCTTCCAATTGTCAGGTGATTGGTGCGACCGAATCTGTAAGAGGATATTGATGAGAAGCCTCCTCATATCAGTCTTCTGGGATGTCCGCACAAATGCCCGGCACTCGAACTGCCACCGAAGCTTGCGGTACAGCTTGTTGGCAAGCGTAGTCTTGCCAACTCCTCCAACTCCCACGATGGACACCACCTTGAGCTTCTCCTCTCCACACAAATCGAGCAAGTTTTCAAGCTTGTTCATGGCGGCGCCAATGCCAACATGACAGGTGGACTCCAT
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| CDS seq | ATGGAGTCCACCTGTCATGTTGGCATTGGCGCCGCCATGAACAAGCTTGAAAACTTGCTCGATTTGTGTGGAGAGGAGAAGCTCAAGGTGGTGTCCATCGTGGGAGTTGGAGGAGTTGGCAAGACTACGCTTGCCAACAAGCTGTACCGCAAGCTTCGGTGGCAGTTCGAGTGCCGGGCATTTGTGCGGACATCCCAGAAGACTGATATGAGGAGGCTTCTCATCAATATCCTCTTACAGATTCGGTCGCACCAATCACCTGACAATTGGAAGGTGCATAGCCTGATTTCCAGTATCAGGACATATCTGCAAGATAAGAGGGGGTGTGTCTGTTGCTTGCTATCCCTGATATCAGCCTTAGCCACAATTAGGCCTCATTTGGCAAAAGATATCCCACCCATCAAAGGGTTCTTGATCGTAATTGATGATCTATGGGCTACATCCACATGGGATATTATTAAGTGCGCTTTGCCGGAGGGTAACAAGTCTAGCAGAATACTGACCACAACAGAAATTGAAGATCTAGCTTTGCAATCTTGTAGTTATGACTTGAAATTTATTTTCAAGATGATACCTTTTGGTGAGGATGACTCAAGAAAACTATTATTCAGTATAGTCTTTGGCTCTCATTCTAAGTGTCCTCCAGAAGTCAGTGAAACATTATATGATATTGTAAGGAAATGTGGTGGCTTGCCGCTAGCTATTGTCACTGTTGCAAGTCTTTTAGCAAGCCAGCTTGATAAACTGGAACAATGGGATTATATAAACAAATCCTTAGGTTACAGTTTGATGGCAAATCCTACTTTGGAAGGGATGAAACAACTACTGAACCTTTGTTACAACAATCTTCCTCAGCATTTGAAGGCATGCATGTTGTATCTTAGTATGTATCAAGGAGATCACATAATTTGGAAGGATGATTTAGTGAATCAATGGATAGCTGAAGGTTTTATCTGTGCAACTGAAGAGCATGACAAGGAAGAAATTTCAAGGGGCTATTTTGATGAGCTTGTTGGTAGAAAAATCATCCAGCCTGTCCATATCGATGACAGCGGTGAGGTTTTGTCCTGTGTAGTTCACCATATTGTACTCAATTTTGTTACATACAAGTCAATAGAAGAGAATTTTATTATTGCAATAGACCATTCACAGGCAACTATAAGATTTGCTGACAAGGTTCGACGATTATCTATTCACTTCAATAATGTAGAAGATGCACCTCCACCTACTAATATGAGATTGTTCCAAGTTCGGACAATTGCCTTCTTTGGGGTCTTGAAGTATATGCCTTTCATTATGGAGTTTCGACTTATTAAAGTTTTATTTCTACATTTTTTGGGTGATGAGGATAGCACCGGCATTGTTGATCTCACTAAAATTTCAGAACTTGTCCGACTGAGATATTTGAAGGTCACCTCTAATGCCACCGTAAAACTGCCAACCCGGTTGCAAGGTCTACCATATTTGGAGACACTGAAAATAGATGGAAAAATAAGTGAAGTTCCAACAGACATTTATTTGCCAGCTGTAACTCAGCGGAGAATCTATGGAGCCTTGGTGAGCTGA
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| Protein seq | MESTCHVGIGAAMNKLENLLDLCGEEKLKVVSIVGVGGVGKTTLANKLYRKLRWQFECRAFVRTSQKTDMRRLLINILLQIRSHQSPDNWKVHSLISSIRTYLQDKRGCVCCLLSLISALATIRPHLAKDIPPIKGFLIVIDDLWATSTWDIIKCALPEGNKSSRILTTTEIEDLALQSCSYDLKFIFKMIPFGEDDSRKLLFSIVFGSHSKCPPEVSETLYDIVRKCGGLPLAIVTVASLLASQLDKLEQWDYINKSLGYSLMANPTLEGMKQLLNLCYNNLPQHLKACMLYLSMYQGDHIIWKDDLVNQWIAEGFICATEEHDKEEISRGYFDELVGRKIIQPVHIDDSGEVLSCVVHHIVLNFVTYKSIEENFIIAIDHSQATIRFADKVRRLSIHFNNVEDAPPPTNMRLFQVRTIAFFGVLKYMPFIMEFRLIKVLFLHFLGDEDSTGIVDLTKISELVRLRYLKVTSNATVKLPTRLQGLPYLETLKIDGKISEVPTDIYLPAVTQRRIYGALVS |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g45924 | LOC_Os11g45924.1 | Chr11 | 27789618 | 27791943 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGTCCACCTGTCATGTTGGCATTGGCGCCGCCATGAACAAGCTTGAAAACTTGCTCGATTTGTGTGGAGAGGAGAAGCTCAAGGTGGTGTCCATCGTGGGAGTTGGAGGAGTTGGCAAGACTACGCTTGCCAACAAGCTGTACCGCAAGCTTCGGTGGCAGTTCGAGTGCCGGGCATTTGTGCGGACATCCCAGAAGACTGATATGAGGAGGCTTCTCATCAATATCCTCTTACAGATTCGGTCGCACCAATCACCTGACAATTGGAAGGTGCATAGCCTGATTTCCAGTATCAGGACATATCTGCAAGATAAGAGGGGGTGTGTCTGTTGCTTGCTATCCCTGATATCAGCCTTAGCCACAATTAGGCCTCATTTGGCAAAAGATATCCCACCCATCAAAGGGTTCTTGATCGTAATTGATGATCTATGGGCTACATCCACATGGGATATTATTAAGTGCGCTTTGCCGGAGGGTAACAAGTCTAGCAGAATACTGACCACAACAGAAATTGAAGATCTAGCTTTGCAATCTTGTAGTTATGACTTGAAATTTATTTTCAAGATGATACCTTTTGGTGAGGATGACTCAAGAAAACTATTATTCAGTATAGTCTTTGGCTCTCATTCTAAGTGTCCTCCAGAAGTCAGTGAAACATTATATGATATTGTAAGGAAATGTGGTGGCTTGCCGCTAGCTATTGTCACTGTTGCAAGTCTTTTAGCAAGCCAGCTTGATAAACTGGAACAATGGGATTATATAAACAAATCCTTAGGTTACAGTTTGATGGCAAATCCTACTTTGGAAGGGATGAAACAACTACTGAACCTTTGTTACAACAATCTTCCTCAGCATTTGAAGGCATGCATGTTGTATCTTAGTATGTATCAAGGAGATCACATAATTTGGAAGGATGATTTAGTGAATCAATGGATAGCTGAAGGTTTTATCTGTGCAACTGAAGAGCATGACAAGGAAGAAATTTCAAGGGGCTATTTTGATGAGCTTGTTGGTAGAAAAATCATCCAGCCTGTCCATATCGATGACAGCGGTGAGGTTTTGTCCTGTGTAGTTCACCATATTGTACTCAATTTTGTTACATACAAGTCAATAGAAGAGAATTTTATTATTGCAATAGACCATTCACAGGCAACTATAAGATTTGCTGACAAGGTTCGACGATTATCTATTCACTTCAATAATGTAGAAGATGCACCTCCACCTACTAATATGAGATTGTTCCAAGTTCGGACAATTGCCTTCTTTGGGGTCTTGAAGTATATGCCTTTCATTATGGAGTTTCGACTTATTAAAGTTTTATTTCTACATTTTTTGGGTGATGAGGATAGCACCGGCATTGTTGATCTCACTAAAATTTCAGAACTTGTCCGACTGAGATATTTGAAGGTCACCTCTAATGCCACCGTAAAACTGCCAACCCGGTTGCAAGGTCTACCATATTTGGAGACACTGAAAATAGATGGAAAAATAAGTGAAGTTCCAACAGACATTTATTTGCCAGCTGTAACTCAGCGGAGAATCTATGGAGCCTTGGTGAGCTGA
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| Protein seq | MESTCHVGIGAAMNKLENLLDLCGEEKLKVVSIVGVGGVGKTTLANKLYRKLRWQFECRAFVRTSQKTDMRRLLINILLQIRSHQSPDNWKVHSLISSIRTYLQDKRGCVCCLLSLISALATIRPHLAKDIPPIKGFLIVIDDLWATSTWDIIKCALPEGNKSSRILTTTEIEDLALQSCSYDLKFIFKMIPFGEDDSRKLLFSIVFGSHSKCPPEVSETLYDIVRKCGGLPLAIVTVASLLASQLDKLEQWDYINKSLGYSLMANPTLEGMKQLLNLCYNNLPQHLKACMLYLSMYQGDHIIWKDDLVNQWIAEGFICATEEHDKEEISRGYFDELVGRKIIQPVHIDDSGEVLSCVVHHIVLNFVTYKSIEENFIIAIDHSQATIRFADKVRRLSIHFNNVEDAPPPTNMRLFQVRTIAFFGVLKYMPFIMEFRLIKVLFLHFLGDEDSTGIVDLTKISELVRLRYLKVTSNATVKLPTRLQGLPYLETLKIDGKISEVPTDIYLPAVTQRRIYGALVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.620005 | 0.443831 | 0.108706 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0686400 | RBH | 0.830266 | 0.567043 | 0.670688 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45750 | RBH | 2.154246 | 1.370123 | 0.517376 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0686400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024380 | RBH | 0.099646 | 2.008879 | 0.759783 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024210 | RBH | 0.198599 | 2.936731 | 2.884382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023820 | RBH | 0.0 | 2.615624 | 1.016197 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023600 | RBH | 0.021435 | 0.193460 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024160 | RBH | 2.927123 | 1.054704 | 2.802874 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0438300 | SBH | 0.0263225 | 0.032052 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024520 | RBH | 0.144832 | 0.687491 | 0.303780 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0436800 | SBH | 0.2076495 | 11.592792 | 0.0196965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024430 | RBH | 0.082148 | 0.037677 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024450 | RBH | 0.067331 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023740 | RBH | 2.832259 | 19.498186 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023630 | RBH | 8.626955 | 0.0 | 4.394338 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023970 | SBH | 0.182915 | 0.802238 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024020 | RBH | 2.763694 | 0.0 | 1.427531 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024170 | SBH | 1.211280 | 7.063657 | 4.711861 |
