Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g44380 | OGI:11076190 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:26831378-26832854 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATATCGATCGGGAGCATATAAACTTCATTCAAACTTTATTATTATTACTACTCGCTCATGCAGAGCGTCTGAAGATCATGCAGAATTACAGAATGAAGCAAACATGATGGACTCAACTCGACTACACAGACATGCAGAACACAGCATTACAGTACACACAGACTCGATCACACTGAAACTGCTTATTATTAAGATGAAGCTAGGAATGGGCGGATATATATCCAATTTGAATTGAATCCGATCATGAAATTAAATGCAGTTCAGATGATATCCAACCCAATTCCGTTGCAACCCGAATGCATGATGTGGAAATCCATGTGTTATGTGTATCATCACGTAGTCCATGGATTTCCGGATACCCAAATATGCGATAAAATGAAAGCTTGACCTGTTCGGGGAATCATGCAGTACCCTTGGTACTTGATCTCGATCGGTGCTCGCCGCCGTGGCGATTCTTTGGGTGTCGCCGCGGCGGCGGCGCCGTCGTCGTCATCACTGGTGGTGATGGATCAAGCACGAGCTGCGCCTGCGCAGCTGCCGGAGCTTAGATGCTTGCATGGCTTCCTCCGTGCACGCGCGCGTGGATCACATCACGGAGCAGGAGGTGGGATCCTCCTCCATGGAGTGGACAAGGTAGTAAGGGAAGACGGCGCCGGTGGGGGTGCATGGCTGCGGCTGCGGCGGTGGCCCGGCCGCCTTCTTGCCTTTCCTCCGTTTGCCGCCCTTCCCTCCGTTCTGCTTGTGCTGCTGCCCGCCCTTGTTACCTTTGTTGCCGCTCTTGCCGGCGTTGATCTCCCTCTGCTCCGAAGATTGGTCAGCTCAATCGGCTAAAGAGGAAAAAAAAAAAAACAAGGAGTAATTTTGATGAGCCATGTATCTTACTGGATTGTTTGTGCGGCGGTGATCGCCCCCACCAGCGGCGACGGCGAGGTGGCGGTCCATCTTCTTCTGTAGGTGGGCAACGTTGACGGCCTGGAGGGCGATGAGGCAGTTGTTGATCCTACTGTTGACGTCATCGAGCTTGGCGGCGAGCCCGTCGCTGGCCACGAACCTGTGGAGCCTGAAGAGCAGACCGTCCCTGCTCCTGCCGCAGGACTCGACGAGCTTGAGCGCGTCGTCGAGGGCGTCCTTGAGACGGCCCAGAATCTTCCGCGTCGTCGCCGCCGCGTCTCCCATGGCCACCTTCTTGTACTCCCTCAGGATGTCGTCGACTTCCTTCACGCGCTGGGCTAGCTCCCGGCACCTGGTCTTGTTCCGGCGAGCCGTCTTCACTGCCTTGGCGATCGCCGAAGCCACCTTCGGCACCGCGCCCACGATGCTGCCCACCGGCTCCATCTTTGAGGTTGTTGATCACCCGGGGCTGCTTGCTTTGCTTTCTCTAACGTTGCGGTACTGCTCTTGCAAGAAGAGGAAGTGTGGCCACTCTACTTATCGTGGAGGCCATTGACGGCTGGCCAAACGGATCTAGTGCTACGA
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| CDS seq | ATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAAGGTGGCTTCGGCGATCGCCAAGGCAGTGAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTGAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCGGCGGCGACGACGCGGAAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGCTCAAGCTCGTCGAGTCCTGCGGCAGGAGCAGGGACGGTCTGCTCTTCAGGCTCCACAGGTTCGTGGCCAGCGACGGGCTCGCCGCCAAGCTCGATGACGTCAACAGTAGGATCAACAACTGCCTCATCGCCCTCCAGGCCGTCAACGTTGCCCACCTACAGAAGAAGATGGACCGCCACCTCGCCGTCGCCGCTGGTGGGGGCGATCACCGCCGCACAAACAATCCAAGGGAGATCAACGCCGGCAAGAGCGGCAACAAAGGTAACAAGGGCGGGCAGCAGCACAAGCAGAACGGAGGGAAGGGCGGCAAACGGAGGAAAGGCAAGAAGGCGGCCGGGCCACCGCCGCAGCCGCAGCCATGCACCCCCACCGGCGCCGTCTTCCCTTACTACCTTGTCCACTCCATGGAGGAGGATCCCACCTCCTGCTCCGTGATGTGA
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| Protein seq | MEPVGSIVGAVPKVASAIAKAVKTARRNKTRCRELAQRVKEVDDILREYKKVAMGDAAATTRKILGRLKDALDDALKLVESCGRSRDGLLFRLHRFVASDGLAAKLDDVNSRINNCLIALQAVNVAHLQKKMDRHLAVAAGGGDHRRTNNPREINAGKSGNKGNKGGQQHKQNGGKGGKRRKGKKAAGPPPQPQPCTPTGAVFPYYLVHSMEEDPTSCSVM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g44380 | LOC_Os11g44380.1 | Chr11 | 26831378 | 26832854 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGCCGGTGGGCAGCATCGTGGGCGCGGTGCCGAAGGTGGCTTCGGCGATCGCCAAGGCAGTGAAGACGGCTCGCCGGAACAAGACCAGGTGCCGGGAGCTAGCCCAGCGCGTGAAGGAAGTCGACGACATCCTGAGGGAGTACAAGAAGGTGGCCATGGGAGACGCGGCGGCGACGACGCGGAAGATTCTGGGCCGTCTCAAGGACGCCCTCGACGACGCGCTCAAGCTCGTCGAGTCCTGCGGCAGGAGCAGGGACGGTCTGCTCTTCAGGCTCCACAGGTTCGTGGCCAGCGACGGGCTCGCCGCCAAGCTCGATGACGTCAACAGTAGGATCAACAACTGCCTCATCGCCCTCCAGGCCGTCAACGTTGCCCACCTACAGAAGAAGATGGACCGCCACCTCGCCGTCGCCGCTGGTGGGGGCGATCACCGCCGCACAAACAATCCAAGGGAGATCAACGCCGGCAAGAGCGGCAACAAAGGTAACAAGGGCGGGCAGCAGCACAAGCAGAACGGAGGGAAGGGCGGCAAACGGAGGAAAGGCAAGAAGGCGGCCGGGCCACCGCCGCAGCCGCAGCCATGCACCCCCACCGGCGCCGTCTTCCCTTACTACCTTGTCCACTCCATGGAGGAGGATCCCACCTCCTGCTCCGTGATGTGA
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| Protein seq | MEPVGSIVGAVPKVASAIAKAVKTARRNKTRCRELAQRVKEVDDILREYKKVAMGDAAATTRKILGRLKDALDDALKLVESCGRSRDGLLFRLHRFVASDGLAAKLDDVNSRINNCLIALQAVNVAHLQKKMDRHLAVAAGGGDHRRTNNPREINAGKSGNKGNKGGQQHKQNGGKGGKRRKGKKAAGPPPQPQPCTPTGAVFPYYLVHSMEEDPTSCSVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.660511 | 0.949900 | 0.220176 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0665600 | RBH | 2.042907 | 1.684258 | 1.788975 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44300 | RBH | 0.191561 | 0.199753 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0665600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022970 | RBH | 0.0 | 1.902923 | 1.106917 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023000 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022690 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022630 | RBH | 0.0 | 0.0 | 2.593927 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0399800 | RBH | 1.155387 | 22.4294395 | 0.0280745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023510 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0420400 | RBH | 1.646264 | 7.565597 | 0.031253 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022850 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022490 | SBH | 0.0 | 7.350265 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022780 | RBH | 0.0 | 0.0 | 0.256761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023220 | RBH | 0.0 | 2.858318 | 0.0 |
