Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g44260 | OGI:11076050 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:26750902-26752365 | ||||||||
| Gene Symbol | RLCK344, OsRLCK344 | ||||||||||
| DNA seq | ATGGCCGGGAGGCAGGCTGAAAAGTTCAGGGATGTTCAGAGCAGGATCGACTCCTACCTCCTGCTCTTCCCCGTGATCAGCCACATGGACATCACTCGTCGTCTCGATCGAATCTACAACATCCTGGTTCCGAACGACATGGCCGGGCCAGCTATGTCTCCTGTCTCCATGCCCCAATTCCCCGTCCCAGCCTCCTAGGTACATTCGAATGCATGCATAATATAACCTCAAACTTTCAATTGCAATTTGTACTTGGCTCCAAAGGGAAGCTTAGAATTGAACTCTAATTTTGCCTTTCTTCCGTTATCTGCACATCTCTGTACTAGGATGCTGCTAAGATGTATTGGAAGGAACCACATGGAGTCCAAGAGTTTAGTTTTAACGAGCTCGCAAAGGCGACCAACAACTTTGCCCCTGAAAGAAAGATCGGTGAAGGTGGCTTCGGCTCGGTGTACATGGGAAGGCTTCCTGATGGGCGGGTGGTCGCCATCAAGCACCGTTGTCGGAACTCAGATCAGGGTATGGAGGTGTTCATGGTAGAGATCACAATATCCTCTCCCCCATCCGCTACAAGCACATTGTTCCACTATATGGCTATTGTGATGTGTTGGTCGAGGAGAAGCAGCGGCGCCTCCTGCCACCGTTCCGGAAGGAAAAGGAGGAGAAAGAGCATCTGCTTGTCTATGAGTACATGGAGAACGGCTCGCTGGATCACCACCTGCACGGCCCAACGTCGTCATCGTCGTCGTCGCCAGTGATGGCGTCCTGGAAGATACGCATGGAGATACTGCTATAGGTGTGTCGCGGGCCATCGAGTACCTGCAGTCCTGCGGTGAGCAGCCGATTATCCACCGCGACATCAAGACATCCAACATCCTTCTCGATGGCAACTGGGTGCCGCGCTTGACGGACTTTGGGTATGCGTTCACCTGGGAAGGCCCAGGCACTGATATTAATGTTCTTTGTGGTACCATGGGATACATGGCCCCGGAGTACCTTATGACATGGGCTCTGAACCCGACAATCGACATCTACAGTTTCGGTGTTGTGATGCTGGAGGTATTGACGGGGAAGAAACCATATCTCTTTAAAGAAGAATGGAAGGAGGAGAAGAGAGAAAAATGTGAGCAAGATGGAAAGAACACAGAAGAGGACAAGGAGGAGAGTGAACGAGAAGAAGAGGAGAAGACAACAGAAGAACAACATGAGTGGCAAAAGCGGGACGGGTGGTCTAGTGGTCACAGCTTGGCGTCTTTAACGCCACTGATTGAGGCGGGGGAGGTGTGGAAGGTGCTGGACAGGCGGCCGGCAGCGGAGCCAACGGCGAGGCAGCTGGAGGCGGCGGAACTGGTGGCGCAGACGGCAGCTCGCTGCCTGCGGCTGCGGTGGGAGGAGCGTCCAGCCATTTCGGAAGTCGTGGCCAATCTAGAGAAGGCGCTCGAGCTCGTCCGTTGCGACGGGTAG
More
|
||||||||||
| CDS seq | ATGGCCGGGAGGCAGGCTGAAAAGTTCAGGGATGTTCAGAGCAGGATCGACTCCTACCTCCTGCTCTTCCCCGTGATCAGCCACATGGACATCACTCGTCGTCTCGATCGAATCTACAACATCCTGGATGCTGCTAAGATGTATTGGAAGGAACCACATGGAGTCCAAGAGTTTAGTTTTAACGAGCTCGCAAAGGCGACCAACAACTTTGCCCCTGAAAGAAAGATCGGTGAAGGTGGCTTCGGCTCGGTGTACATGGGAAGGCTTCCTGATGGGCGGGTGGTCGCCATCAAGCACCGTTGTCGGAACTCAGATCAGGAACGGCTCGCTGGATCACCACCTGCACGGCCCAACGTCGTCATCGTCGTCGTCGCCAGTGATGGCGTCCTGGAAGATACGCATGGAGATACTGCTATAGGTGTGTCGCGGGCCATCGAGTACCTGCAGTCCTGCGGTGAGCAGCCGATTATCCACCGCGACATCAAGACATCCAACATCCTTCTCGATGGCAACTGGGTGCCGCGCTTGACGGACTTTGGGTATGCGTTCACCTGGGAAGGCCCAGGCACTGATATTAATGTTCTTTGTGGTACCATGGGATACATGGCCCCGGAGTACCTTATGACATGGGCTCTGAACCCGACAATCGACATCTACAGTTTCGGTGTTGTGATGCTGGAGGTATTGACGGGGAAGAAACCATATCTCTTTAAAGAAGAATGGAAGGAGGAGAAGAGAGAAAAATGTGAGCAAGATGGAAAGAACACAGAAGAGGACAAGGAGGAGAGTGAACGAGAAGAAGAGGAGAAGACAACAGAAGAACAACATGAGTGGCAAAAGCGGGACGGGTGGTCTAGTGGTCACAGCTTGGCGTCTTTAACGCCACTGATTGAGGCGGGGGAGGTGTGGAAGGTGCTGGACAGGCGGCCGGCAGCGGAGCCAACGGCGAGGCAGCTGGAGGCGGCGGAACTGGTGGCGCAGACGGCAGCTCGCTGCCTGCGGCTGCGGTGGGAGGAGCGTCCAGCCATTTCGGAAGTCGTGGCCAATCTAGAGAAGGCGCTCGAGCTCGTCCGTTGCGACGGGTAG
More
|
||||||||||
| Protein seq | MAGRQAEKFRDVQSRIDSYLLLFPVISHMDITRRLDRIYNILDAAKMYWKEPHGVQEFSFNELAKATNNFAPERKIGEGGFGSVYMGRLPDGRVVAIKHRCRNSDQERLAGSPPARPNVVIVVVASDGVLEDTHGDTAIGVSRAIEYLQSCGEQPIIHRDIKTSNILLDGNWVPRLTDFGYAFTWEGPGTDINVLCGTMGYMAPEYLMTWALNPTIDIYSFGVVMLEVLTGKKPYLFKEEWKEEKREKCEQDGKNTEEDKEESEREEEEKTTEEQHEWQKRDGWSSGHSLASLTPLIEAGEVWKVLDRRPAAEPTARQLEAAELVAQTAARCLRLRWEERPAISEVVANLEKALELVRCDG |
||||||||||
| Function | Putative serine/threonine-protein kinase-like protein CCR3 [UniProtKB/Swiss-Prot:Q9LY50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g44260 | LOC_Os11g44260.1 | Chr11 | 26750902 | 26752365 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGGGAGGCAGGCTGAAAAGTTCAGGGATGTTCAGAGCAGGATCGACTCCTACCTCCTGCTCTTCCCCGTGATCAGCCACATGGACATCACTCGTCGTCTCGATCGAATCTACAACATCCTGGATGCTGCTAAGATGTATTGGAAGGAACCACATGGAGTCCAAGAGTTTAGTTTTAACGAGCTCGCAAAGGCGACCAACAACTTTGCCCCTGAAAGAAAGATCGGTGAAGGTGGCTTCGGCTCGGTGTACATGGGAAGGCTTCCTGATGGGCGGGTGGTCGCCATCAAGCACCGTTGTCGGAACTCAGATCAGGAACGGCTCGCTGGATCACCACCTGCACGGCCCAACGTCGTCATCGTCGTCGTCGCCAGTGATGGCGTCCTGGAAGATACGCATGGAGATACTGCTATAGGTGTGTCGCGGGCCATCGAGTACCTGCAGTCCTGCGGTGAGCAGCCGATTATCCACCGCGACATCAAGACATCCAACATCCTTCTCGATGGCAACTGGGTGCCGCGCTTGACGGACTTTGGGTATGCGTTCACCTGGGAAGGCCCAGGCACTGATATTAATGTTCTTTGTGGTACCATGGGATACATGGCCCCGGAGTACCTTATGACATGGGCTCTGAACCCGACAATCGACATCTACAGTTTCGGTGTTGTGATGCTGGAGGTATTGACGGGGAAGAAACCATATCTCTTTAAAGAAGAATGGAAGGAGGAGAAGAGAGAAAAATGTGAGCAAGATGGAAAGAACACAGAAGAGGACAAGGAGGAGAGTGAACGAGAAGAAGAGGAGAAGACAACAGAAGAACAACATGAGTGGCAAAAGCGGGACGGGTGGTCTAGTGGTCACAGCTTGGCGTCTTTAACGCCACTGATTGAGGCGGGGGAGGTGTGGAAGGTGCTGGACAGGCGGCCGGCAGCGGAGCCAACGGCGAGGCAGCTGGAGGCGGCGGAACTGGTGGCGCAGACGGCAGCTCGCTGCCTGCGGCTGCGGTGGGAGGAGCGTCCAGCCATTTCGGAAGTCGTGGCCAATCTAGAGAAGGCGCTCGAGCTCGTCCGTTGCGACGGGTAG
More
|
|||||||
| Protein seq | MAGRQAEKFRDVQSRIDSYLLLFPVISHMDITRRLDRIYNILDAAKMYWKEPHGVQEFSFNELAKATNNFAPERKIGEGGFGSVYMGRLPDGRVVAIKHRCRNSDQERLAGSPPARPNVVIVVVASDGVLEDTHGDTAIGVSRAIEYLQSCGEQPIIHRDIKTSNILLDGNWVPRLTDFGYAFTWEGPGTDINVLCGTMGYMAPEYLMTWALNPTIDIYSFGVVMLEVLTGKKPYLFKEEWKEEKREKCEQDGKNTEEDKEESEREEEEKTTEEQHEWQKRDGWSSGHSLASLTPLIEAGEVWKVLDRRPAAEPTARQLEAAELVAQTAARCLRLRWEERPAISEVVANLEKALELVRCDG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0664100 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44430 | SBH | 0.170733 | 0.277123 | 0.084260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0664100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023000 | SBH | 0.101863 | 23.943014 | 0.311833 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023020 | SBH | 0.028885 | 0.0 | 0.072533 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022720 | SBH | 0.000000 | 6.946922 | 0.193026 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022660 | SBH | 0.0 | 10.408031 | 0.888079 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0398400 | RBH | 0.011596 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0422000 | SBH | 0.0640055 | 5.37775 | 0.1425045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023110 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023320 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022890 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022450 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022870 | SBH | 0.0 | 1.667486 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023300 | SBH | 0.0 | 0.0 | 0.0 |
