Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g43240 | OGI:11073940 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:26081886-26082541 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTCGACGACAACCGTCACCGGAGCAGCACAAACCATGGTGGCCGAAGTCGACCATCTGCGGCATTCCAAGAAGGAAGGCAGCCGCCACCGCCGCCGGCGACGGTGGCCGCCCGATGGCTGCCGATGGCGGATCAGGCAAGAATGGTCTGCTTCTGCAGCTGCAACATCCCATGGATGAGATGGTAACTCTCCTCAAAGGCCTACCTACAGAGTATCGACTCAACGTGCTGGTTCAGGGGGTTGCCTCGCCTTGAACATGCACCACCTCAAGAAGATCTGTGAGCTGTTGCGCTCGCTAAAGTACCGGAAGATGAACATCTCCCAGTTGCCCAAGCAGATGAACAACCTCCTGCATCTGGAGACGCTCGACATCAGGCAGACCAAAGTGCAAGGTGATGCGATGAAGGATATCTTCCTCAATGAGCTGAAGCATCTCCTTGCTGGTGACATCATTGTTGATGCCGCTGGCGACAATGAGGCAATAGCGCTCTCCACCGTGGTAATGCCTCCTAAGATCAGCAAGAACACGAAGATATTGCGCCATGTCCAGATCAAGGATGGTCCAGAAGCCCAGCTCCAGCTTTCTCATGTCGCGTCTCTGGAGCGGCTAAGGAAGCTGGGTGTGCTCGGTCCTCGGCTGCAGAGAAGATAA
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| CDS seq | ATGGCTCGACGACAACCGTCACCGGAGCAGCACAAACCATGGTGGCCGAAGTCGACCATCTGCGGCATTCCAAGAAGGAAGGCAGCCGCCACCGCCGCCGGCGACGGTGGCCGCCCGATGGCTGCCGATGGCGGATCAGGCAAGAATGGGGGTTGCCTCGCCTTGAACATGCACCACCTCAAGAAGATCTGTGAGCTGTTGCGCTCGCTAAAGTACCGGAAGATGAACATCTCCCAGTTGCCCAAGCAGATGAACAACCTCCTGCATCTGGAGACGCTCGACATCAGGCAGACCAAAGTGCAAGGTGATGCGATGAAGGATATCTTCCTCAATGAGCTGAAGCATCTCCTTGCTGGTGACATCATTGTTGATGCCGCTGGCGACAATGAGGCAATAGCGCTCTCCACCGTGGTAATGCCTCCTAAGATCAGCAAGAACACGAAGATATTGCGCCATGTCCAGATCAAGGATGGTCCAGAAGCCCAGCTCCAGCTTTCTCATGTCGCGTCTCTGGAGCGGCTAAGGAAGCTGGGTGTGCTCGGTCCTCGGCTGCAGAGAAGATAA
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| Protein seq | MARRQPSPEQHKPWWPKSTICGIPRRKAAATAAGDGGRPMAADGGSGKNGGCLALNMHHLKKICELLRSLKYRKMNISQLPKQMNNLLHLETLDIRQTKVQGDAMKDIFLNELKHLLAGDIIVDAAGDNEAIALSTVVMPPKISKNTKILRHVQIKDGPEAQLQLSHVASLERLRKLGVLGPRLQRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g43240 | LOC_Os11g43240.1 | Chr11 | 26081886 | 26082541 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTCGACGACAACCGTCACCGGAGCAGCACAAACCATGGTGGCCGAAGTCGACCATCTGCGGCATTCCAAGAAGGAAGGCAGCCGCCACCGCCGCCGGCGACGGTGGCCGCCCGATGGCTGCCGATGGCGGATCAGGCAAGAATGGGGGTTGCCTCGCCTTGAACATGCACCACCTCAAGAAGATCTGTGAGCTGTTGCGCTCGCTAAAGTACCGGAAGATGAACATCTCCCAGTTGCCCAAGCAGATGAACAACCTCCTGCATCTGGAGACGCTCGACATCAGGCAGACCAAAGTGCAAGGTGATGCGATGAAGGATATCTTCCTCAATGAGCTGAAGCATCTCCTTGCTGGTGACATCATTGTTGATGCCGCTGGCGACAATGAGGCAATAGCGCTCTCCACCGTGGTAATGCCTCCTAAGATCAGCAAGAACACGAAGATATTGCGCCATGTCCAGATCAAGGATGGTCCAGAAGCCCAGCTCCAGCTTTCTCATGTCGCGTCTCTGGAGCGGCTAAGGAAGCTGGGTGTGCTCGGTCCTCGGCTGCAGAGAAGATAA
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| Protein seq | MARRQPSPEQHKPWWPKSTICGIPRRKAAATAAGDGGRPMAADGGSGKNGGCLALNMHHLKKICELLRSLKYRKMNISQLPKQMNNLLHLETLDIRQTKVQGDAMKDIFLNELKHLLAGDIIVDAAGDNEAIALSTVVMPPKISKNTKILRHVQIKDGPEAQLQLSHVASLERLRKLGVLGPRLQRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0653300 | SBH | 0.379680 | 0.463943 | 0.371438 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43250 | RBH | 0.256440 | 0.311652 | 0.095497 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0653300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022340 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022070 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021580 | SBH | 0.031442 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022050 | SBH | 3.128829 | 0.0 | 0.443957 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0389000 | RBH | 0.015469 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022810 | SBH | 0.179600 | 0.0 | 0.027110 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0411900 | SBH | 1.3763845 | 0.3563995 | 0.1615845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022490 | SBH | 0.032526 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021770 | SBH | 0.668026 | 0.0 | 0.071560 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021880 | SBH | 0.092250 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022680 | SBH | 0.0 | 0.0 | 0.0 |
