Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g42540 | OGI:11072980 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:25614506-25617384 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGTGGAACCGTACCTGGAGCTCCGACCTCCTAAGCTGAAATAATCAAAGAATTAATCAGGATAGGATGGCACGAATCTTATAGCATCGAAGCACGAATCTTGGCAGCCGGGATAGTCCGATAGCGCCCAAGCGGATAGAGCAGTTGCTACAGGCTAGTTCGTCAGTCTTTTCCTCCTCAAATCCTCCATGGCGGAGGAGAGGGATTAGCCACAGTGCGGCGCGGAGGACGACGGCGATGTCGATGCCCACCTTCCACCTCGCCCCCGACCTCGCCGTCTCCCGCCTCTGCTTCGGTCAGCCTGCCCCCCAGACCACCCTCCTCCTCTCTCTCTCCCGCGGTTTTCTTCTGACTCAGCGGCCGTGTGTTGAAGGGACGATGACGATGGGGGAGCAGAGCCGGCTGCCGGAGTCGCTCCGCCTCCTCGACGCCGCATTCGACGCCGGCGTCAACTTCTTCGACTCCGCCGAGATGTACTACTACGCTCCACTTCTCATCCTGCCCCCCCCCCCCTCATCTTTTCCTCTTTTCCAAGAAACACCCCTGGATAAATTATCGGAGGGGCTTTTATGCAAAATGTCTTCCAGGTACCCGGTCCCACAGCGCAGTGAGACGCACGGGCGCAGCGAGGAGTTCCTCGGCCGCTGGCTGCGGGCCCGCCGGGCCCCACGTGACAGCGTCGTGCTCGCCACTAAGGTCAACGGTGGTCAAAGCTTCTTCCACACTTCACAGCTTCACTGGCTCACTCACTGAGGTCGACTGAATTATCGTTTTCTTGCTGTGTTTTGGTGATGCTGCGTTGGTGGGATAGGTCGCCGGGCCGTCCGGGGAGATGACGTGGATCCGCGGCGGGCCGGCGTCGCTCGATTCGCGGAACATCGCGGAGGCGATTGATGGAAGGTTGGTCGATTGGAATGCCGTTCTTTCTTCCCAATTCTAGTGCTGTTATTCTGGTCAGAACTTCAGAACTCTGATGCTTTGATGGTCTCTGTTAGTCGACCTGTTTGTGTGAGTCTGATGCTGATTAGTGCTATAAAAGCTAATCCTTGTTGCATGAATATACTTGATGCTGATGTACGAGTTGTCTAGTTCAATCGTGGCAATGTGAATTCTTTCACAGTTCCTGTGTTTTCTGTAGTTGTATGTTGTATAGATATTTCTGTTGATATCTGAGTGACCGAGTGTACCTTGTGTTGATTGGGATATGGTGCAGTTTGCGCAGGCTGGGAGTGGATTACATTGATCTTTACCAGATACATTGGCCTGATCGGTCTGTGGAACATGGTTTCATGCCTATAACTGTGATACAGTTTCGCAGTGTTGCCATCTTGCGTTTCTGCGCATCATTGACTTTTAATAAGGGATGTTGTGCACTTGTGCCTGCAGCTATGTCCCGATGTTTGGAGAGACAGAATATGATCCAAGCCATCAGTATATGTCTGTTCCAATGGAAGAGCAGCTACTGGCTCTTGGAAGAGCCATAGACGCTGGCAAGGTTTGTTGCAAGGGTGTTTGCGTTTCATTGTTATGACAAATGTTTACTTATGGCCAGCAAGTTTATTCATTGCTGATGTTAGATTAGGTACATTGGCCTTAGCAATGAAACACCATATGGGTTGATGAAGTTCCTTCAACTGAGTAGAGATTCCCAGCTGCACTCCAAGATACTGACAGTGCAAGTAAGTGTTACGCCGTTTTTTTTTCTGATTCTATAATTCATCGTATTTAGTATCAGCACATGCTCATACCTTTTTTGGCAATTCTTTTGCAGAACTCATATAACCTGCTATGTCGAAATTTTGATGCTGGGCTAGCTGAATGCTGCCACCATGAGAGGTATCTGTTATATAGTCCTGAAATTGGCTGTTATCTTTAGCTTGGTACATTTACAACTGAAAAGTACTTCCTTCTCAGCATGTAACCCTGTGAAATGATGTTAAATTTGCAAAATGTACTCGTCACTTGCTTTTCTATATACAAACTTACAATTCTGCAAACTGATACTGAAGTTTCCTTGCTGCACTATGAAAAATGCAGAATCAACTTGCTAGCTTACAGCCCAATGGCCATGGGTATACTTTCAGGGAAGTATTACTCATCGGATGATGGCGGCCCACCAGATGCAAGAATGAATCTTTTCAAAGGTCTGAACTCTGAAGTTGCACATACTACTTGCATCTTTATATCTGTTTTGCACCACAGCATCATAATTGTTCCTCCTGCTTTCCAGGGAGATACTCTGAGGGTGAATCCAGATATAATCTTCAGAACCCCAAAATGAAAGCTGCTGTGAAGGTGATCTGGTGATTTATATCTTGTCATCGTAAATTAACTCAGTGCTTACACTGCATTCCTTATAAATTAACTCAGGAATACGTAAAAATTTCTGCTAAGCATGGGATTTCGCCAGCGATTCTAGCAGTTGGTATGTCAACTCATCATTTTTGTAACATTTGAAGTTGCTTTCCCTTACTGTTGCTTTCATATCCCTGTCTCTCAATATTGCTTTCAGCGTTTGTTCTGAGGCACCCCCTTGTGTCATCGGCTGTTTTCGGCGCGACAGAAATTTCGCAACTTACAGAAGTTCTTCAGGCCACCAGGATCCATCTCTCTGAGGAGATTGTTGCAGAGATCAATGAAGTTCATGCAAGATATCCCAACCCTTGCCCATAAGAAGTTCAGAACAGAACACAGTAGTCAGATCTTCTCTTTGTCTTTCTTGTTCTGTAGATTGCAAATTTGCAATGTCATATGATCATCAGTGAGTAACAGTTAGCAGTTTTGCCAAGGATGAGTTATTCAACTTGTCCTATTGTTGTTGCCAATGCCAACAAGTGATTATCTGATAAATTGCATTATCTCCAGTCTTATTTTCCTTC
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| CDS seq | ATGTCGATGCCCACCTTCCACCTCGCCCCCGACCTCGCCGTCTCCCGCCTCTGCTTCGGGACGATGACGATGGGGGAGCAGAGCCGGCTGCCGGAGTCGCTCCGCCTCCTCGACGCCGCATTCGACGCCGGCGTCAACTTCTTCGACTCCGCCGAGATGTACCCGGTCCCACAGCGCAGTGAGACGCACGGGCGCAGCGAGGAGTTCCTCGGCCGCTGGCTGCGGGCCCGCCGGGCCCCACGTGACAGCGTCGTGCTCGCCACTAAGGTCGCCGGGCCGTCCGGGGAGATGACGTGGATCCGCGGCGGGCCGGCGTCGCTCGATTCGCGGAACATCGCGGAGGCGATTGATGGAAGTTTGCGCAGGCTGGGAGTGGATTACATTGATCTTTACCAGATACATTGGCCTGATCGCTATGTCCCGATGTTTGGAGAGACAGAATATGATCCAAGCCATCAGTATATGTCTGTTCCAATGGAAGAGCAGCTACTGGCTCTTGGAAGAGCCATAGACGCTGGCAAGATTAGGTACATTGGCCTTAGCAATGAAACACCATATGGGTTGATGAAGTTCCTTCAACTGAGTAGAGATTCCCAGCTGCACTCCAAGATACTGACAGTGCAAAACTCATATAACCTGCTATGTCGAAATTTTGATGCTGGGCTAGCTGAATGCTGCCACCATGAGAGAATCAACTTGCTAGCTTACAGCCCAATGGCCATGGGTATACTTTCAGGGAAGTATTACTCATCGGATGATGGCGGCCCACCAGATGCAAGAATGAATCTTTTCAAAGGGAGATACTCTGAGGGTGAATCCAGATATAATCTTCAGAACCCCAAAATGAAAGCTGCTGTGAAGGAATACGTAAAAATTTCTGCTAAGCATGGGATTTCGCCAGCGATTCTAGCAGTTGCGTTTGTTCTGAGGCACCCCCTTGTGTCATCGGCTGTTTTCGGCGCGACAGAAATTTCGCAACTTACAGAAGTTCTTCAGGCCACCAGGATCCATCTCTCTGAGGAGATTGTTGCAGAGATCAATGAAGTTCATGCAAGATATCCCAACCCTTGCCCATAA
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| Protein seq | MSMPTFHLAPDLAVSRLCFGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYPVPQRSETHGRSEEFLGRWLRARRAPRDSVVLATKVAGPSGEMTWIRGGPASLDSRNIAEAIDGSLRRLGVDYIDLYQIHWPDRYVPMFGETEYDPSHQYMSVPMEEQLLALGRAIDAGKIRYIGLSNETPYGLMKFLQLSRDSQLHSKILTVQNSYNLLCRNFDAGLAECCHHERINLLAYSPMAMGILSGKYYSSDDGGPPDARMNLFKGRYSEGESRYNLQNPKMKAAVKEYVKISAKHGISPAILAVAFVLRHPLVSSAVFGATEISQLTEVLQATRIHLSEEIVAEINEVHARYPNPCP |
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| Function | Protein tas [UniProtKB/Swiss-Prot:P0A9T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g42540 | LOC_Os11g42540.1 | Chr11 | 25614506 | 25617384 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGATGCCCACCTTCCACCTCGCCCCCGACCTCGCCGTCTCCCGCCTCTGCTTCGGGACGATGACGATGGGGGAGCAGAGCCGGCTGCCGGAGTCGCTCCGCCTCCTCGACGCCGCATTCGACGCCGGCGTCAACTTCTTCGACTCCGCCGAGATGTACCCGGTCCCACAGCGCAGTGAGACGCACGGGCGCAGCGAGGAGTTCCTCGGCCGCTGGCTGCGGGCCCGCCGGGCCCCACGTGACAGCGTCGTGCTCGCCACTAAGGTCGCCGGGCCGTCCGGGGAGATGACGTGGATCCGCGGCGGGCCGGCGTCGCTCGATTCGCGGAACATCGCGGAGGCGATTGATGGAAGTTTGCGCAGGCTGGGAGTGGATTACATTGATCTTTACCAGATACATTGGCCTGATCGCTATGTCCCGATGTTTGGAGAGACAGAATATGATCCAAGCCATCAGTATATGTCTGTTCCAATGGAAGAGCAGCTACTGGCTCTTGGAAGAGCCATAGACGCTGGCAAGATTAGGTACATTGGCCTTAGCAATGAAACACCATATGGGTTGATGAAGTTCCTTCAACTGAGTAGAGATTCCCAGCTGCACTCCAAGATACTGACAGTGCAAAACTCATATAACCTGCTATGTCGAAATTTTGATGCTGGGCTAGCTGAATGCTGCCACCATGAGAGAATCAACTTGCTAGCTTACAGCCCAATGGCCATGGGTATACTTTCAGGGAAGTATTACTCATCGGATGATGGCGGCCCACCAGATGCAAGAATGAATCTTTTCAAAGGGAGATACTCTGAGGGTGAATCCAGATATAATCTTCAGAACCCCAAAATGAAAGCTGCTGTGAAGGAATACGTAAAAATTTCTGCTAAGCATGGGATTTCGCCAGCGATTCTAGCAGTTGCGTTTGTTCTGAGGCACCCCCTTGTGTCATCGGCTGTTTTCGGCGCGACAGAAATTTCGCAACTTACAGAAGTTCTTCAGGCCACCAGGATCCATCTCTCTGAGGAGATTGTTGCAGAGATCAATGAAGTTCATGCAAGATATCCCAACCCTTGCCCATAA
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| Protein seq | MSMPTFHLAPDLAVSRLCFGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYPVPQRSETHGRSEEFLGRWLRARRAPRDSVVLATKVAGPSGEMTWIRGGPASLDSRNIAEAIDGSLRRLGVDYIDLYQIHWPDRYVPMFGETEYDPSHQYMSVPMEEQLLALGRAIDAGKIRYIGLSNETPYGLMKFLQLSRDSQLHSKILTVQNSYNLLCRNFDAGLAECCHHERINLLAYSPMAMGILSGKYYSSDDGGPPDARMNLFKGRYSEGESRYNLQNPKMKAAVKEYVKISAKHGISPAILAVAFVLRHPLVSSAVFGATEISQLTEVLQATRIHLSEEIVAEINEVHARYPNPCP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g42540 | LOC_Os11g42540.2 | Chr11 | 25614506 | 25617384 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGATGCCCACCTTCCACCTCGCCCCCGACCTCGCCGTCTCCCGCCTCTGCTTCGGGACGATGACGATGGGGGAGCAGAGCCGGCTGCCGGAGTCGCTCCGCCTCCTCGACGCCGCATTCGACGCCGGCGTCAACTTCTTCGACTCCGCCGAGATGTACCCGGTCCCACAGCGCAGTGAGACGCACGGGCGCAGCGAGGAGTTCCTCGGCCGCTGGCTGCGGGCCCGCCGGGCCCCACGTGACAGCGTCGTGCTCGCCACTAAGGTCGCCGGGCCGTCCGGGGAGATGACGTGGATCCGCGGCGGGCCGGCGTCGCTCGATTCGCGGAACATCGCGGAGGCGATTGATGGAAGCTATGTCCCGATGTTTGGAGAGACAGAATATGATCCAAGCCATCAGTATATGTCTGTTCCAATGGAAGAGCAGCTACTGGCTCTTGGAAGAGCCATAGACGCTGGCAAGATTAGGTACATTGGCCTTAGCAATGAAACACCATATGGGTTGATGAAGTTCCTTCAACTGAGTAGAGATTCCCAGCTGCACTCCAAGATACTGACAGTGCAAAACTCATATAACCTGCTATGTCGAAATTTTGATGCTGGGCTAGCTGAATGCTGCCACCATGAGAGAATCAACTTGCTAGCTTACAGCCCAATGGCCATGGGTATACTTTCAGGGAAGTATTACTCATCGGATGATGGCGGCCCACCAGATGCAAGAATGAATCTTTTCAAAGGGAGATACTCTGAGGGTGAATCCAGATATAATCTTCAGAACCCCAAAATGAAAGCTGCTGTGAAGGAATACGTAAAAATTTCTGCTAAGCATGGGATTTCGCCAGCGATTCTAGCAGTTGCGTTTGTTCTGAGGCACCCCCTTGTGTCATCGGCTGTTTTCGGCGCGACAGAAATTTCGCAACTTACAGAAGTTCTTCAGGCCACCAGGATCCATCTCTCTGAGGAGATTGTTGCAGAGATCAATGAAGTTCATGCAAGATATCCCAACCCTTGCCCATAA
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| Protein seq | MSMPTFHLAPDLAVSRLCFGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYPVPQRSETHGRSEEFLGRWLRARRAPRDSVVLATKVAGPSGEMTWIRGGPASLDSRNIAEAIDGSYVPMFGETEYDPSHQYMSVPMEEQLLALGRAIDAGKIRYIGLSNETPYGLMKFLQLSRDSQLHSKILTVQNSYNLLCRNFDAGLAECCHHERINLLAYSPMAMGILSGKYYSSDDGGPPDARMNLFKGRYSEGESRYNLQNPKMKAAVKEYVKISAKHGISPAILAVAFVLRHPLVSSAVFGATEISQLTEVLQATRIHLSEEIVAEINEVHARYPNPCP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.108620 | 0.618903 | 0.361512 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0645200 | RBH | 0.175013 | 0.911649 | 1.530207 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0645200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021920 | RBH | 0.000000 | 2.472534 | 0.431727 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021890 | RBH | 0.000000 | 0.0 | 1.002844 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021730 | RBH | 0.423482 | 0.0 | 1.116615 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021230 | RBH | 0.058183 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021740 | RBH | 1.372901 | 2.107555 | 4.004775 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0385300 | RBH | 7.3929945 | 3.7141255 | 6.4776255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022310 | RBH | 0.000000 | 0.037594 | 0.199900 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0405200 | RBH | 6.9406045 | 7.227482 | 12.977304 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022090 | RBH | 0.063048 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022190 | RBH | 0.236838 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021840 | RBH | 0.937339 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021430 | RBH | 0.373114 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021600 | RBH | 0.135036 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021650 | RBH | 0.263287 | 0.000000 | 0.241554 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022130 | RBH | 0.564169 | 0.0 | 5.112576 |
