Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g42100 | OGI:11072400 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:25358357-25360219 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCTGTCGCTCAGTCCAAGGAGCGTGGTAACCCCGCGGCCCGCGGCGTCGAGGAGGACATCCTCGTCCCACTCCTCGCCCGACTAGCAACCATCAGGACCGTCCTCGACAACGCGCCGGCTCCAAGTCGCCGTCGTCTACCAGTGCATGTGCGCGACGCCGAAGAGGATGCTAGGGTCGAGGCCCGCGCGCTGCTGGAGAAGGTCCAAGGAGAGATGTCCTACCTCCAGCGCGTCTTCCGCCGCATTGACGAAGCCGAAAATAGCATCCTCTACGGCTTCGACCCTGTCGAGGAGCAGATCGACGACGCGCTCCAGCAAGCGCAGGTTGGGCTTGACGTGGAGCAGGTACACGAGGCTCTCCTCGCCGTGGACGCCGACATCGAGGTCATCAAGGCCAGCATCCGCGAGGTCTACAGGTTCCCCTGCGACGGCGACGAACGCCGTGGTCCCCCACCGCCGTCGACCGCGCCGGCCACGGGCGTGGTGATGACGAGGAGGATGGGGGAGATCCGTCGCGGCCCGCAGATGCGGCACCTCGGCCTCGCCATCGGCGGCTTCGAGGCGCGGCTCCGCGGCTGCGTGCTCACCCTCGCCGCGTTCCCGGAGTGCGCCGTGATCAAGAAGCGCCTCCTCATCCACTGGTGGCTCGGCGAGGGCTTCGTCCGCTCCGCCGCCGAGGGGAAGAGCCGCTTCGACGAGCTCATCGCCAAGGGCCTCATCGTCCCGATCCCGGGCCATCTCTGCGCCACCGTCCACCGCTGCACGGTGCGGCCATGGATGCGCGACCTCCTCACCGGCGTGGCCAAACGCACCGCCTTCCTCGACCTCGACTCCGGCAACGACTTCACCCTCGCGCGCCGCGCGTGCCTGAACGCCGGCAGGATGTCCTCGGGGTTCAGCGCCGAGGCGAGAGCCATCTACAACATCGACCAGAAATACCTCGAGCTCGACGACGCCTGGTTCGCCGGGAAGAAGGAGCTGCGCGCGCTGCAGCTCGGCCAGTGGCGAGAGTTCGGCCCCCTCGAGCAGATTGCCAACCCCATGGACAGCCACATCGAGCTCAGCGGCGTCGAACACCTCGCGGACATGGAGAGCTGCAAGAATCTCAGGTACATCAGCTTCAGGGGAATCTCAAGAATCGAGTCCCTGCCCGATTCGATCGGCAGGCTGCGTGAGCTCACCGTGCTGGATCTCCGGGCATGCCATAATCTGGAGGAATTGGGGCAAGGGATCACAAGGCTGGATCGATTGGGGTATCTCGACTTGTCTGAGTGCCACCTGCTCGTCGGAATGCCTAAAGGGATTGGCCGGCTCACACGGCTCGAGGTCCTCAAGGGATTTGTGGTTGCAAATCCAAGCAGAAGAGAGCCCTGCCATCTCAATGAGCTCACCAAGCTGAACAAGCTCAGGAAGCTTGGCATTGTGATTGGCACAATGGCTGTTCCGACAGATGATGAGTTCATGAAATTGGGCGAGTTCAGGGCGCTCGAATCGCTCAAGATCAGATGGGGTGTGCTGGCTTCTGATAGCAAAGGGAAAATTGAAGCATCGTCGCATCAAAAACCGATCGACAAAATGAAGTTTGCGCTTCCTCCAAATCTGAAGAAGCTAGATCTCCGATGCTTCCCGCTGACGGATTTCGCTCAGTGGGTTACACCGAAGGGTGTTAAGAAGCTGTACATTAGGGGAGGAAAACTGATGACACTTGGAGATGAACAGGGCTGGGAGGCAGAGGTGCTTCGGCTGAGATTTCTGAATGATCTCGAGTATGATCACGATCGGCTTAAACGATCATTCAGGAAGCTCAAACCTGAAAATACAGAGATCCATGCATGTCCAAAGTTCATCCGTGGACAATGA
More
|
||||||||||
| CDS seq | ATGTCTGTCGCTCAGTCCAAGGAGCGTGGTAACCCCGCGGCCCGCGGCGTCGAGGAGGACATCCTCGTCCCACTCCTCGCCCGACTAGCAACCATCAGGACCGTCCTCGACAACGCGCCGGCTCCAAGTCGCCGTCGTCTACCAGTGCATGTGCGCGACGCCGAAGAGGATGCTAGGGTCGAGGCCCGCGCGCTGCTGGAGAAGGTCCAAGGAGAGATGTCCTACCTCCAGCGCGTCTTCCGCCGCATTGACGAAGCCGAAAATAGCATCCTCTACGGCTTCGACCCTGTCGAGGAGCAGATCGACGACGCGCTCCAGCAAGCGCAGGTTGGGCTTGACGTGGAGCAGGTACACGAGGCTCTCCTCGCCGTGGACGCCGACATCGAGGTCATCAAGGCCAGCATCCGCGAGGTCTACAGGTTCCCCTGCGACGGCGACGAACGCCGTGGTCCCCCACCGCCGTCGACCGCGCCGGCCACGGGCGTGGTGATGACGAGGAGGATGGGGGAGATCCGTCGCGGCCCGCAGATGCGGCACCTCGGCCTCGCCATCGGCGGCTTCGAGGCGCGGCTCCGCGGCTGCGTGCTCACCCTCGCCGCGTTCCCGGAGTGCGCCGTGATCAAGAAGCGCCTCCTCATCCACTGGTGGCTCGGCGAGGGCTTCGTCCGCTCCGCCGCCGAGGGGAAGAGCCGCTTCGACGAGCTCATCGCCAAGGGCCTCATCGTCCCGATCCCGGGCCATCTCTGCGCCACCGTCCACCGCTGCACGGTGCGGCCATGGATGCGCGACCTCCTCACCGGCGTGGCCAAACGCACCGCCTTCCTCGACCTCGACTCCGGCAACGACTTCACCCTCGCGCGCCGCGCGTGCCTGAACGCCGGCAGGATGTCCTCGGGGTTCAGCGCCGAGGCGAGAGCCATCTACAACATCGACCAGAAATACCTCGAGCTCGACGACGCCTGGTTCGCCGGGAAGAAGGAGCTGCGCGCGCTGCAGCTCGGCCAGTGGCGAGAGTTCGGCCCCCTCGAGCAGATTGCCAACCCCATGGACAGCCACATCGAGCTCAGCGGCGTCGAACACCTCGCGGACATGGAGAGCTGCAAGAATCTCAGGTACATCAGCTTCAGGGGAATCTCAAGAATCGAGTCCCTGCCCGATTCGATCGGCAGGCTGCGTGAGCTCACCGTGCTGGATCTCCGGGCATGCCATAATCTGGAGGAATTGGGGCAAGGGATCACAAGGCTGGATCGATTGGGGTATCTCGACTTGTCTGAGTGCCACCTGCTCGTCGGAATGCCTAAAGGGATTGGCCGGCTCACACGGCTCGAGGTCCTCAAGGGATTTGTGGTTGCAAATCCAAGCAGAAGAGAGCCCTGCCATCTCAATGAGCTCACCAAGCTGAACAAGCTCAGGAAGCTTGGCATTGTGATTGGCACAATGGCTGTTCCGACAGATGATGAGTTCATGAAATTGGGCGAGTTCAGGGCGCTCGAATCGCTCAAGATCAGATGGGGTGTGCTGGCTTCTGATAGCAAAGGGAAAATTGAAGCATCGTCGCATCAAAAACCGATCGACAAAATGAAGTTTGCGCTTCCTCCAAATCTGAAGAAGCTAGATCTCCGATGCTTCCCGCTGACGGATTTCGCTCAGTGGGTTACACCGAAGGGTGTTAAGAAGCTGTACATTAGGGGAGGAAAACTGATGACACTTGGAGATGAACAGGGCTGGGAGGCAGAGGTGCTTCGGCTGAGATTTCTGAATGATCTCGAGTATGATCACGATCGGCTTAAACGATCATTCAGGAAGCTCAAACCTGAAAATACAGAGATCCATGCATGTCCAAAGTTCATCCGTGGACAATGA
More
|
||||||||||
| Protein seq | MSVAQSKERGNPAARGVEEDILVPLLARLATIRTVLDNAPAPSRRRLPVHVRDAEEDARVEARALLEKVQGEMSYLQRVFRRIDEAENSILYGFDPVEEQIDDALQQAQVGLDVEQVHEALLAVDADIEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMGEIRRGPQMRHLGLAIGGFEARLRGCVLTLAAFPECAVIKKRLLIHWWLGEGFVRSAAEGKSRFDELIAKGLIVPIPGHLCATVHRCTVRPWMRDLLTGVAKRTAFLDLDSGNDFTLARRACLNAGRMSSGFSAEARAIYNIDQKYLELDDAWFAGKKELRALQLGQWREFGPLEQIANPMDSHIELSGVEHLADMESCKNLRYISFRGISRIESLPDSIGRLRELTVLDLRACHNLEELGQGITRLDRLGYLDLSECHLLVGMPKGIGRLTRLEVLKGFVVANPSRREPCHLNELTKLNKLRKLGIVIGTMAVPTDDEFMKLGEFRALESLKIRWGVLASDSKGKIEASSHQKPIDKMKFALPPNLKKLDLRCFPLTDFAQWVTPKGVKKLYIRGGKLMTLGDEQGWEAEVLRLRFLNDLEYDHDRLKRSFRKLKPENTEIHACPKFIRGQ |
||||||||||
| Function | Disease resistance RPP13-like protein 4 [UniProtKB/Swiss-Prot:Q38834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g42100 | LOC_Os11g42100.1 | Chr11 | 25358357 | 25360219 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTGTCGCTCAGTCCAAGGAGCGTGGTAACCCCGCGGCCCGCGGCGTCGAGGAGGACATCCTCGTCCCACTCCTCGCCCGACTAGCAACCATCAGGACCGTCCTCGACAACGCGCCGGCTCCAAGTCGCCGTCGTCTACCAGTGCATGTGCGCGACGCCGAAGAGGATGCTAGGGTCGAGGCCCGCGCGCTGCTGGAGAAGGTCCAAGGAGAGATGTCCTACCTCCAGCGCGTCTTCCGCCGCATTGACGAAGCCGAAAATAGCATCCTCTACGGCTTCGACCCTGTCGAGGAGCAGATCGACGACGCGCTCCAGCAAGCGCAGGTTGGGCTTGACGTGGAGCAGGTACACGAGGCTCTCCTCGCCGTGGACGCCGACATCGAGGTCATCAAGGCCAGCATCCGCGAGGTCTACAGGTTCCCCTGCGACGGCGACGAACGCCGTGGTCCCCCACCGCCGTCGACCGCGCCGGCCACGGGCGTGGTGATGACGAGGAGGATGGGGGAGATCCGTCGCGGCCCGCAGATGCGGCACCTCGGCCTCGCCATCGGCGGCTTCGAGGCGCGGCTCCGCGGCTGCGTGCTCACCCTCGCCGCGTTCCCGGAGTGCGCCGTGATCAAGAAGCGCCTCCTCATCCACTGGTGGCTCGGCGAGGGCTTCGTCCGCTCCGCCGCCGAGGGGAAGAGCCGCTTCGACGAGCTCATCGCCAAGGGCCTCATCGTCCCGATCCCGGGCCATCTCTGCGCCACCGTCCACCGCTGCACGGTGCGGCCATGGATGCGCGACCTCCTCACCGGCGTGGCCAAACGCACCGCCTTCCTCGACCTCGACTCCGGCAACGACTTCACCCTCGCGCGCCGCGCGTGCCTGAACGCCGGCAGGATGTCCTCGGGGTTCAGCGCCGAGGCGAGAGCCATCTACAACATCGACCAGAAATACCTCGAGCTCGACGACGCCTGGTTCGCCGGGAAGAAGGAGCTGCGCGCGCTGCAGCTCGGCCAGTGGCGAGAGTTCGGCCCCCTCGAGCAGATTGCCAACCCCATGGACAGCCACATCGAGCTCAGCGGCGTCGAACACCTCGCGGACATGGAGAGCTGCAAGAATCTCAGGTACATCAGCTTCAGGGGAATCTCAAGAATCGAGTCCCTGCCCGATTCGATCGGCAGGCTGCGTGAGCTCACCGTGCTGGATCTCCGGGCATGCCATAATCTGGAGGAATTGGGGCAAGGGATCACAAGGCTGGATCGATTGGGGTATCTCGACTTGTCTGAGTGCCACCTGCTCGTCGGAATGCCTAAAGGGATTGGCCGGCTCACACGGCTCGAGGTCCTCAAGGGATTTGTGGTTGCAAATCCAAGCAGAAGAGAGCCCTGCCATCTCAATGAGCTCACCAAGCTGAACAAGCTCAGGAAGCTTGGCATTGTGATTGGCACAATGGCTGTTCCGACAGATGATGAGTTCATGAAATTGGGCGAGTTCAGGGCGCTCGAATCGCTCAAGATCAGATGGGGTGTGCTGGCTTCTGATAGCAAAGGGAAAATTGAAGCATCGTCGCATCAAAAACCGATCGACAAAATGAAGTTTGCGCTTCCTCCAAATCTGAAGAAGCTAGATCTCCGATGCTTCCCGCTGACGGATTTCGCTCAGTGGGTTACACCGAAGGGTGTTAAGAAGCTGTACATTAGGGGAGGAAAACTGATGACACTTGGAGATGAACAGGGCTGGGAGGCAGAGGTGCTTCGGCTGAGATTTCTGAATGATCTCGAGTATGATCACGATCGGCTTAAACGATCATTCAGGAAGCTCAAACCTGAAAATACAGAGATCCATGCATGTCCAAAGTTCATCCGTGGACAATGA
More
|
|||||||
| Protein seq | MSVAQSKERGNPAARGVEEDILVPLLARLATIRTVLDNAPAPSRRRLPVHVRDAEEDARVEARALLEKVQGEMSYLQRVFRRIDEAENSILYGFDPVEEQIDDALQQAQVGLDVEQVHEALLAVDADIEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMGEIRRGPQMRHLGLAIGGFEARLRGCVLTLAAFPECAVIKKRLLIHWWLGEGFVRSAAEGKSRFDELIAKGLIVPIPGHLCATVHRCTVRPWMRDLLTGVAKRTAFLDLDSGNDFTLARRACLNAGRMSSGFSAEARAIYNIDQKYLELDDAWFAGKKELRALQLGQWREFGPLEQIANPMDSHIELSGVEHLADMESCKNLRYISFRGISRIESLPDSIGRLRELTVLDLRACHNLEELGQGITRLDRLGYLDLSECHLLVGMPKGIGRLTRLEVLKGFVVANPSRREPCHLNELTKLNKLRKLGIVIGTMAVPTDDEFMKLGEFRALESLKIRWGVLASDSKGKIEASSHQKPIDKMKFALPPNLKKLDLRCFPLTDFAQWVTPKGVKKLYIRGGKLMTLGDEQGWEAEVLRLRFLNDLEYDHDRLKRSFRKLKPENTEIHACPKFIRGQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.090391 | 0.288579 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0640800 | RBH | 0.0 | 0.065168 | 0.621257 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42060 | RBH | 0.0 | 0.0 | 0.069380 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0640800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021600 | RBH | 0.0 | 3.238268 | 0.520890 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021540 | RBH | 0.052693 | 0.0 | 0.569813 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021430 | RBH | 1.046905 | 0.921639 | 1.752079 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020910 | RBH | 0.0 | 0.097378 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021420 | RBH | 1.481370 | 0.0 | 2.133159 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0381500 | SBH | 0.67395 | 0.4438985 | 1.724073 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021980 | RBH | 0.0 | 0.132396 | 0.252133 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0401500 | SBH | 0.5544415 | 0.3192 | 8.1238655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021760 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021860 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021510 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021110 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021270 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021270 | RBH | 0.039137 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021800 | RBH | 0.403553 | 0.000000 | 1.032781 |
