Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g39480 | OGI:11068120 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:23506616-23507170 | ||||||||
| Gene Symbol | OsSTA260 | ||||||||||
| DNA seq | TTAGAATTTGCGAATGTAGATCCCAAATGTTTCGAGGCACTGCTCTGCACGGCCAAAGAAACCAACGATGTTGCTACTATACTCCAACGGATCAACTTTAAACGGAGTCCCTCCTCCTTGTCCAAAAGGTCCATAGGTACCACCATTTGTGAAGAACTTAAGCGATGTAATAACATTCGGCATTGAATTAAACGGACCTACTGTTCCAGAAACTTCCCTTAGAAAGTCGTGAGAGCCAAGCCGAATCTACAAGGAAAGGAGAACCGTTAGCAAACTATTTATGTATAAAAAGAAATAATTAATTGGCACCCTATATTACTGGACAGGTATTTTAAGATTCAGTTATTACTTACCATTTGGCTACTTTCACTACTAGCACTTCCCCAAGGACCTGAAGTGTGATTGTCCCCATTAACTTCACTATAGGAAAATTCGAGGGAATCAACAACAACAGAACTATAAATTGTTATGCTTTCTAGACGGTGAGGAACTGTCTCCATGACATATTCGATTCCTCCATTTCCACCCCAAGGACCAATCTTGTTGAACCCAGCC
More
|
||||||||||
| CDS seq | ATGGAGACAGTTCCTCACCGTCTAGAAAGCATAACAATTTATAGTTCTGTTGTTGTTGATTCCCTCGAATTTTCCTATAGTGAAGTTAATGGGGACAATCACACTTCAGGTCCTTGGGGAAGTGCTAGTAGTGAAAGTAGCCAAATGATTCGGCTTGGCTCTCACGACTTTCTAAGGGAAGTTTCTGGAACAGTAGGTCCGTTTAATTCAATGCCGAATGTTATTACATCGCTTAAGTTCTTCACAAATGGTGGTACCTATGGACCTTTTGGACAAGGAGGAGGGACTCCGTTTAAAGTTGATCCGTTGGAGTATAGTAGCAACATCGTTGGTTTCTTTGGCCGTGCAGAGCAGTGCCTCGAAACATTTGGGATCTACATTCGCAAATTCTAA |
||||||||||
| Protein seq | METVPHRLESITIYSSVVVDSLEFSYSEVNGDNHTSGPWGSASSESSQMIRLGSHDFLREVSGTVGPFNSMPNVITSLKFFTNGGTYGPFGQGGGTPFKVDPLEYSSNIVGFFGRAEQCLETFGIYIRKF |
||||||||||
| Function | Protein GOS9 [UniProtKB/Swiss-Prot:P0C5C6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g39480 | LOC_Os11g39480.1 | Chr11 | 23506616 | 23507170 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGACAGTTCCTCACCGTCTAGAAAGCATAACAATTTATAGTTCTGTTGTTGTTGATTCCCTCGAATTTTCCTATAGTGAAGTTAATGGGGACAATCACACTTCAGGTCCTTGGGGAAGTGCTAGTAGTGAAAGTAGCCAAATGATTCGGCTTGGCTCTCACGACTTTCTAAGGGAAGTTTCTGGAACAGTAGGTCCGTTTAATTCAATGCCGAATGTTATTACATCGCTTAAGTTCTTCACAAATGGTGGTACCTATGGACCTTTTGGACAAGGAGGAGGGACTCCGTTTAAAGTTGATCCGTTGGAGTATAGTAGCAACATCGTTGGTTTCTTTGGCCGTGCAGAGCAGTGCCTCGAAACATTTGGGATCTACATTCGCAAATTCTAA
More
|
|||||||
| Protein seq | METVPHRLESITIYSSVVVDSLEFSYSEVNGDNHTSGPWGSASSESSQMIRLGSHDFLREVSGTVGPFNSMPNVITSLKFFTNGGTYGPFGQGGGTPFKVDPLEYSSNIVGFFGRAEQCLETFGIYIRKF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0524900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0524900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015600 | SBH | 0.000000 | 0.0 | 2.081914 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015570 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015520 | SBH | 0.0 | 0.0 | 2.668813 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019420 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015640 | SBH | 0.0 | 0.0 | 0.624039 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0358000 | SBH | 0.0032925 | 1.037052 | 0.011698 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015850 | SBH | 0.0 | 0.0 | 0.137674 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0306700 | SBH | 0.011967 | 0.224512 | 0.049339 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020210 | SBH | 0.0 | 0.088693 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015760 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015410 | SBH | 0.0 | 1.743778 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019650 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019760 | SBH | 0.0 | 8.919422 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015330 | SBH | 0.0 | 0.245426 | 0.195830 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015670 | SBH | 0.0 | 0.0 | 0.822024 |
