Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g39350 | OGI:11068330 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:23421717-23426690 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAAAATTTTGATTATTCATTTGTGCCTGGAATGAGCACTATAAAACGTTATTTTATAACTAGCTAATTACTTCCAAACAATGCTTGAAGCAGGTACCATATCTTGGTAGATGACATATGGTCTGTATCAGCATGGGAAAACATTAGGGATTCATTCCCCAAGAGTGATAAGGGTAGTTGTGTAGTGGTGACTACAAGGTTTAACTCTGTAGCTGAAGCCTGCCGCCGTCAACAAGGTCATGTGCACAAGCTCAAACAGCTCGATCCAGAGAGCTCCTACAATTTGTTTCTTCAGATAATATCTGCTAATGATCTGTGTCCCATTAGACCTATTAATGCTCGCATTATCATGAAAACGTGTGGGGGTCTGCCTTTGGCAATTGTAGTAGTAGCAGGGCTGATTGCTAGTAAAATGAAATCAAAGATTGACCTGACATTGGATCAGCATTTGGTTGATGTAGATGAGGCTTTAAGTGCAGAGTTGGGAAGCAATCTCACCACCGAAGGAGTAACGCAAATAATTAACCACTGTTACAAAAATCTGCCACCTGATCTTAAGACATGCTTGCTGTACTTGAGCACATTTCCCAAGGGCCGCAGTATTAGCAGGAAGCATTTGATAAGAAGATGGATTGCTGAAGGATTCATTACTGAAGAGCATGGGAAGACTGCTGAGGAAGTTGCAGAAGACAGCCTCAATGAACTCATTGGCAGGAACTTGATAAAGCCTATCAAAAACAGCAGCAACGGCAGGGTGAAGAGCTGCCAAATTCATGACATGGTCCTCCAGTACATTGTCTCCAAGTCTAGTGATGAGAATTTCATCGCCGTTATTGGCGGCCACTGGCAGACACCACTTCCAAGCTACAAGGTACGGCGATTGTCTGTCCATAAAAGTGATAAGCAAGAAACAGACATGGTAGAGAGGATGAAATTGTCCCATGTCCGATCCTTGACAGTATTGGAGAGTTTCAGTGCTCTTCATTCTACTATGCTCAAGTTCCAGATACTGCAGGTATTGGACCTTGATGGCTGCAAGGACTTGTCCCACCCACATCAGCTCAAGAAAATATGCAACATGTATCAGTTGAAGTACCTGGGCTTGCGGCGGACAGATATTGACAAGATCCCGAAGAATATAGGGAGGCTGGAGTACTTGGAGGTACTGGACATTAGGGAGACAAATGTCAGAAAGTTGCCTACATCATTTGCAAAGCTTCAGCGAATGACCCATCTACTTGCTGGCAACAAAAGCAAGCGGACAGCATTGAAATTAACTGAGGAAATTACAAAGGTCGTAGCTCTACAAACACTTTCCGGGATTGAGATCAGTGGAAGCTCAACTTTAGAAGAAGACCGGGAGCAGCCACGAGATATGCCCATCAGACACTCTACAACCACCAGAGCCGAGGAGAGAGGCAACACTGCCTTGCATGGTCCACATAAAGAAGCTAGCAAAGTGGACCTTCCAAAACAGCTGCGTCCTCTTGAAGCCTTGGAGAAGCTCACCAACCTTAAGAAACTTGCCATTTACAAGCTTGTAAAGTTCCAAGCGAAAGACGATGAGTTACTGCTCTCTGCTATTGAGCATTTGAGCAGTTGTTCCCTCAAGTTTCTTGCAATTGATGACAGTTTCACAGGTTTCCTTGAAAGCTCACTGAGTTCTTCGCAAGCAGCACCAGAACACCTGTACACCCTCGAGCTTTCTGGCATGTTATCTAAAGCGCCTGGATGGATTGACCGCCTGCACAACCTTGAGAAGCTTACTCTGTCATTGACTTCACTTAAGACAGATACTTTGGTGGTTCTGAGTAGCCTGCCTGAGTTATTCTCTCTCACTTTTTCACTCCATGCAGCAGACAATGATTCAAATGCTCTCAAAATAATACATAGGAATACAATGAAGTCAGGAGGTAAGATCTTTGTGCTGGATGAGGGATTTGAAAAGCTGAAGCTACTGCATTTTGCGGCACCTGTGCTACCTTCTCTGAGCTTTCTAGAAGGAGCAATGCCGGAGCTTCAGAGGCTTGAGCTGAGGTTCAGAATGGTGGACTATATGTATGGTCTGGAAAACCTCTCAAAGCTGCAACAGGTATTTTTAACAGTCAGCAGCCAGGCACCTGAAGATACTAGGGCAAAGACATCTCATATCAAACAACTGGCAAGCATGATTCAAAAGGCTAAGAATTCCCCTAACCCCAGTGTGGTGATAGATGAGTACAACGAACTAGCAAAAGAATAATGGATGATCTAGACATAATCCGCAATTGCAATGTGCCATTGTATTATCGATATGTTGTACCTACTCCATCAGTTGTGCCTTTTTCTTTTATGACTTTCTGATCTATTTACAAATTATTGTACTTTTTTTTTATGATCTGTGGCATCTGTATTTCGTTTCATCTGTTGTACCCTAAAGTCTCTGCAAGTATAAAGACTTATCTTCAGCTTTCCTTAGAAAACTAATCAGTCCAGAGGTGTAACTAGTTCTAATAATTATCTTTCTAACTCAATGTGCTATTTTTTATCTCTCTCACGAATTGCCTAGTATAATAAAAAAAAACTTTGTCTTTTGTCACTAAGGAAGTAGACTAATTCACTTATTTCTATCTACTTCAAGAATTAATTAGTATTGTAACAACTAATCTTGAATTCTTGGGTGAATGAATTATGATTGAGAATCAAGCACCTATCCTTTCCTCCTATGTCAAGTACAAGAATTGCTCGGTGGCAGCAGCTCTGCAAGATTATGCTTGGGTGGCCACTGGCCAATATCAGAGGGGGGTTATCCTTGCAAGGTACTGCCGATTATTTCAAGATTTGGGATGTGGTCTCAGAGTATCCCTGTGCCAGGGATTCTATGCTCTGGTTGGCATAGGCTAATGGCGATTTCTCTGTCAAATCGGTGTATTCGCTGCTCTGTGCTCGGTGAACAAAGTGTGCCTTGGGCAGAATTGGGTGCAAATCCAGGGTGTCGGCACGTTGCAAATTCTTCATGTTCCTTGCCATGCGAGGAGCTTGTCTTACTGCCAACAACTTGCAGTGTCGCAGGTGGCATTTGGTGAGCTTCTGTCACCTTGGTTGCTGTGATCTGGAAACCTGCTTGCACATCTTTCACTGTTGCGCATGCACGGTGCATGTCTGGAATGCACAGCCGCCTGGGATTCATTTGCCCACAGCCTACACTGCATTTGCTTCCCTGGTGGCTCGCAGTCCGCAAGACGATCTGCAAGCAGGAGCAGAGAGCCTTCAATGCAGGTGTGATCCTAGTGACATGGCTTATCTGGAAGGAACAGAACGCCCGTGTTTTTGAGGGGAAGGCCACTATGGTGTTTGCGCTATGTGTGGTCATCATAGATGAGTGGCGGATGTGGAAGGTGGCTGCTCTTTTTACGCTGGGCCTGGGGTGCATTGGGGCACTGCGTGTTCTGATGTGAGAATTTTTGGCATTGTTGTTGTTGCGGTGTTAAAATCTGTGATGTGGCTTGTTTCGTTCTCTGATTGTTAGGGCGTGCTCCGGCGCTTTGGTCTGTAAGCCATGTGTCCTGTAAATTCTGTTTTCTCCCATTCTTAATAAACTTCGGCCAGTTTCTGCCAGCGCGGAGGAAAAAAAAATCGAATTCTTGTCTCAAGGATTCAACCATCCCTGACAACTTCCTAAAAAGTACCATTTCGACCAGAATTTCATTTTTAATAATTGTAGAGTTCAAGTGAACTCTGTGTGTAACTTTTATATGTTTATACATCTAATATTCCTTAAAAAATTAAACAAAAACTCTTTACTGCAATAATCTTGTATAGCATCTTGATTTGATTTTCAGTGCTAGGAGTTCTGCACTTTTTAGTTCACCGGAATATGACTTATTGTTTATTCCGACATCCAATCTGTTTTAAAACTAAATCCTGATATGGCAATTCCTCACAGATGTGAACAAATCAACCACCTTAACTAAGCACAAAAATTTAGTTTTTCCCTGAGATTTTAATCCAGTGGTGGTGGAACTACCAACATTACCAATTCATTTCAATTAAAAATTTTCTGTTTCTCATTCTCCATTTTCAGTTAGCTGGTGTGCAGCTTCATAGCTTGTTTCTGTACTAAACATATTGATTAAAATTACCCCCTTATGTTCCTATGATGTGTTGAACTGTCACCACCATTTAGCCACAAGCAAAACGAGAAAACTGAAGTTTTGCATCAGATCAGATGAAAAACCTGGGGAGCCCATGATGGCCTCTTGAAGTCTTGATGAGCCCTGATCCTCGGGCTAGCTGGTAGCTAAGCCGCGGCAGTTGAAAGATGAGAGAAGAAAGACGCATCACGCCAAATAACTGTAATTTTACTTCCCCATCTGGCTATATAACTGTAATTTTTAGTGTTTTTTTCTTAATCTCTTGTAATAAACTTCCTTCACTATGTATTTATATATTTATGGTACACTCGTTCCCTACATTCTCCTAAGGCCTTGAGTAGGCTTCTGTGTAAACTGAAATCAAGTAGAATGAAAAGTAAACTGGAATTAGTTGCAGGAGTTAATATGAGGAAACTTACATCCAAGGCAGAAGCAAAGGGTCGGTTTCCTCCTCGGCATTCTATCAAACAGTTCGTGGGCAACAAATATTTGTAGCCTTCAGACCATCTGCAACTGCAAGCTAGGCCCCAACCTTCGATCTGCAGAATGCATCTGCAGCAGAGACGAGCGAATCAAACATTGAGTGATCGATCGGTCGGTCGCCGCACGACGGCGGCAACGCACAGCAAATCGGGATGGACGTGTGTCGCCTGGGTGAGAAAAGAGGTTTTACCTGGAGATACATGATACTCCTGGAAGAGGCAAGATAGCCTCCACATTCCCCCTCCTCCGGGCACACGGCCGCCGGTCACCGGTCGCCGGTGAGGTAGCCGACGCCCGACGCGGACACGGCGGCGGGGAGGCCGGAAGGCCACCGCCGGTGAGAGTGGTATTGGAGGTT
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| CDS seq | ATGTGGGTGGGACAAGTCCTTGCAGCCATCAAGGTCCAATACCTGCAGTATCTGGAACTTGAGCATAGTAGAATGAAGAGCACTGAAACTCTCCAATACTGTCAAGGATCGGACATGGGACAATTTCATCCTCTCTACCATGTCTGTTTCTTGCTTATCACTTTTATGGACAGACAATCGCCGTACCTTGTAGCTTGGAAGTGGTGTCTGCCAGTGGCCGCCAATAACGGCGATGAAATTCTCATCACTAGACTTGGAGACAATGTACTGGAGGACCATGTCATGAATTTGGCAGCTCTTCACCCTGCCGTTGCTGCTGTTTTTGATAGGCTTTATCAAGTTCCTGCCAATGAGTTCATTGAGGCTGTCTTCTGCAACTTCCTCAGCAGTCTTCCCATGCTCTTCAGTAATGAATCCTTCAGCAATCCATCTTCTTATCAAATGCTTCCTGCTAATACTGCGGCCCTTGGGAAATGTGCTCAAGTACAGCAAGCATGTCTTAAGATCAGGTGGCAGATTTTTGTAACAGTGGTTAATTATTTGCGTTACTCCTTCGGTGGTGAGATTGCTTCCCAACTCTGCACTTAA
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| Protein seq | MWVGQVLAAIKVQYLQYLELEHSRMKSTETLQYCQGSDMGQFHPLYHVCFLLITFMDRQSPYLVAWKWCLPVAANNGDEILITRLGDNVLEDHVMNLAALHPAVAAVFDRLYQVPANEFIEAVFCNFLSSLPMLFSNESFSNPSSYQMLPANTAALGKCAQVQQACLKIRWQIFVTVVNYLRYSFGGEIASQLCT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g39350 | LOC_Os11g39350.1 | Chr11 | 23421717 | 23426690 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGGGTGGGACAAGTCCTTGCAGCCATCAAGGTCCAATACCTGCAGTATCTGGAACTTGAGCATAGTAGAATGAAGAGCACTGAAACTCTCCAATACTGTCAAGGATCGGACATGGGACAATTTCATCCTCTCTACCATGTCTGTTTCTTGCTTATCACTTTTATGGACAGACAATCGCCGTACCTTGTAGCTTGGAAGTGGTGTCTGCCAGTGGCCGCCAATAACGGCGATGAAATTCTCATCACTAGACTTGGAGACAATGTACTGGAGGACCATGTCATGAATTTGGCAGCTCTTCACCCTGCCGTTGCTGCTGTTTTTGATAGGCTTTATCAAGTTCCTGCCAATGAGTTCATTGAGGCTGTCTTCTGCAACTTCCTCAGCAGTCTTCCCATGCTCTTCAGTAATGAATCCTTCAGCAATCCATCTTCTTATCAAATGCTTCCTGCTAATACTGCGGCCCTTGGGAAATGTGCTCAAGTACAGCAAGCATGTCTTAAGATCAGGTGGCAGATTTTTGTAACAGTGGTTAATTATTTGCGTTACTCCTTCGGTGGTGAGATTGCTTCCCAACTCTGCACTTAA
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| Protein seq | MWVGQVLAAIKVQYLQYLELEHSRMKSTETLQYCQGSDMGQFHPLYHVCFLLITFMDRQSPYLVAWKWCLPVAANNGDEILITRLGDNVLEDHVMNLAALHPAVAAVFDRLYQVPANEFIEAVFCNFLSSLPMLFSNESFSNPSSYQMLPANTAALGKCAQVQQACLKIRWQIFVTVVNYLRYSFGGEIASQLCT |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g39350 | LOC_Os11g39350.2 | Chr11 | 23421717 | 23426690 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGGGTGGGACAAGTCCTTGCAGCCATCAAGGTCCAATACCTGCAGTATCTGGAACTTGAGCATAGTAGAATGAAGAGCACTGAAACTCTCCAATACTGTCAAGGATCGGACATGGGACAATTTCATCCTCTCTACCATGTCTGTTTCTTGCTTATCACTTTTATGGACAGACAATCGCCGTACCTTGTAGCTTGGAAGTGGTGTCTGCCAGTGGCCGCCAATAACGGCGATGAAATTCTCATCACTAGACTTGGAGACAATGTACTGGAGGACCATGTCATGAATTTGGCAGCTCTTCACCCTGCCGTTGCTGCTGTTTTTGATAGGCTTTATCAAGTTCCTGCCAATGAGTTCATTGAGGCTGTCTTCTGCAACTTCCTCAGCAGTCTTCCCATGCTCTTCAGTAATGAATCCTTCAGCAATCCATCTTCTTATCAAATGCTTCCTGCTAATACTGCGGCCCTTGGGAAATGTGCTCAAGTACAGCAAGCATGTCTTAAGATCAGGTGGCAGATTTTTGTAACAGTGGTTAATTATTTGCGTTACTCCTTCGGTGGTGAGATTGCTTCCCAACTCTGCACTTAA
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| Protein seq | MWVGQVLAAIKVQYLQYLELEHSRMKSTETLQYCQGSDMGQFHPLYHVCFLLITFMDRQSPYLVAWKWCLPVAANNGDEILITRLGDNVLEDHVMNLAALHPAVAAVFDRLYQVPANEFIEAVFCNFLSSLPMLFSNESFSNPSSYQMLPANTAALGKCAQVQQACLKIRWQIFVTVVNYLRYSFGGEIASQLCT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.130197 | 0.066288 | 0.181998 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0607000 | RBH | 0.000000 | 0.104064 | 0.433843 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0607000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019810 | RBH | 0.000000 | 0.000000 | 0.288520 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020000 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019890 | RBH | 0.092857 | 0.000000 | 0.271528 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020430 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019710 | RBH | 0.240396 | 0.0 | 0.450163 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019820 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019750 | RBH | 0.195212 | 2.946980 | 1.001091 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
