Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g35980 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:21145760-21148865 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TACGTGCTCACTGCTCTCCTCCAATCACTCAAACACACATAGTAAGCCTGTGCACCCCATGAAATCATGAATCCCACCGGCAAGCCGTTGCTCCTCCTCCTCCTGGGCCTTCTCCTGCTAGCAACCACCACTTTGTCCCGAGCAATCCATGCGATACCGTACCGAAACTCGGCTCTGGTGCCACCACCGTCGCTTGCGTGCCACGGGAACGGGACGCCCTTCTGGCCTTCAAGCGAGACATCACTAGCGACCACTTAGGACTTCTCACCTCGTGGAGGCAAGATGACCATGACTGCTACCGGTGGAGAGGCATAACCTGTAGCAACCTCACCGGCCATGTCCTCAAGCTTCACCTCAGTGGCATATACACTAATGAGCATACAGGTATGGAAGGTTTGGTCGGCCAGATAAGTCCCCAGCTGCTCTACCTGGATCATTTAGAACATCTTGATCTCAGCATTAACTATTTGGAGGGGCCAAGCGGTCAAATCCCAGAGTTCATAGGCTCTATGAAGAGCTTGAGATATCTAAAGCTCTCTGGCATTCCGTTCTCTGGTACGGTGCCTTCTCAACTTGGCAATCTTTCAAAGTTGCAACATCTCGACCTTTCCGACCTGGAGGGAAAGGAAGGTATGCACTTAGCGGATATGTCATGGGTATCTCGTCTAGGATCATTACGGTACCTTGATTTATCCTTTATAAATCTCAGCGCGGCTTCTGATTGGGCTCATGCCGTGAACATGATCCCTTCCATTAGAGTACTTTGTTTATCTTTATGCCAACTTCAAGGTGCGAACCATTCACTCGCACACTACAACCTTACAAAACTCGAGAAGCTTGATCTGTCCTCGAACTATTTTGACCACCCGTATGCATCTTGTTGGTTCTGGAACTCAACAATCCTCAAATACCTTGATATTTCATCGAACAATTTGTATGATCAGCTTCCAAATGCGATAGGACACATGGCATCCCTCAGAGTCATTAATTTTTCTGATAACGCTCACATGGGCATTGTGGAACCAGAGTTGATGACGAACCTATGTAGTTTGGAGAATCTAAACCTCCAAGGGAGCCTCTCCTATGGGAACATGACAGTTGCTCGATAGTCTGTCAAATTGCTCCAACAAATTAAGTGAGCTGAATTTAGCAGACAATAATATCAGTGGAACTCTGCCACCTGGGATATTCCAACAATTTGCAGACTTAGTCACTCTTGACGCTAGCAACAATCAGCTCGCTGGGCCTCTGCCCGTTGAGATTGGTATGCTCACAGGTTTAAATCACCTGGACCTGAGTTACAATAACCTGGCAGGTGACATCACCGAAGAACACTTTGCTAACCTAAGGAGCTTAAAATACATAGACTTATCGTCTAATGATCCCTTGAATATTGTGGTAGACCCTACATGGATAGCCCCATTTAGATTAGAACGTGCATCTTTTCCAGCTTGCATGATGGGTCCTCAATTTCCTACTTGGCTCCAGTGGTCGGTGGATATTTGGTTATTAGAAATCTCAAATACTGGTATAAAGGATAAGCTTCCTGATTGGTTCTGGACCACATTTTCAAAGCTCGAAGAATTGGACATGTCTAACAACCAAATAAGTGGTGTCTTGCCAACAAATATGGAAACCATGGCATTGAGTTATCTCTATCTTGGTTCAAACCAAATAAGTGAGTGGTCAATTACCTCCTTTACCGAGAAAAATTGTAAAATTGGACGTCTCCAATAACTCTCTGTCTGGATCTCTGCCATCTAACTTTGGAGCTCAAAATCAACAAATGGTTACGCTGATTCTTTCCTTCAACAACCTATCTGGCCATATTCCGGAATCCTTTTGCAGAATGGAACAGTTGGCCGCCTTGGACTTAGCAAACAATCTTTTTGAGGGAGAATTGCCTCAATGTTTCGGGATGACAGGTATGGCAATCGTTCTTTTACAAAACAATAGATTCTCTGGCTCGTTCCCAGTTTTCCTAGAACGCTCCACAAAGCTACAACTCGTAGATCTATCAAGGAACAATTTCTCCGGCAAATTACCAACGTGGATTGGTGACAAGAAGGAATTAGTGCTTTTGCTACTAAGCCACAATGTTTTCTCTGGGATTATTCCGATCAATATCACAAATCTTTCAAATCTTCGTCAATTGAACCTGGCAGGCAATAGTCTATCAGGTAACATACCTTGGCGTTTGTCAAATTTAGAGGCAATGAAGGAAGACAACTACATTTTTAACCTTGACATACCTGATGATAGCAGTTATAATAATTTATCCGTATTCACAAAGCGGACAGAACTTTTTTATGGTCCAAATATTTTCAGCGCGGTGAACATTGACTTGTCATCAAACTATTTAGTTGGTCAAATTCCAGAGGAAATAGCTTCTCTTGCACTTCTAAAAAATCTGAATTTGTCAAGGAATTACCTGAGTGGAAAAATCCCACAAAAAATTGGGTCGTTATGGTCACTGGAATCACTAGATCTCTCAAGGAACAAGCTTTCGGGGGAGATCCCTCCTAGCCTGTCAAATTTATCATATTTGAGTGATTTGGATTTATCACACAACAATCTATCGGGAAGAATACCATCGGGATCACAGCTTGACACCCTCTATTTTGAACATCCTGATATGTATAGCAGTAACGATGGTCTTTTCGGATTTCCTCTTCAAAGAAATTACTCGGAAGGAATTGCACCAAAGCAGGGCTATCACGATCATAGTAAAACCCGACAAGTAGCTGAGCCAATGTTCTTTTACCTTGGGCTTGTGTCAGGATTTGTTGTTGGCCTATGGGTGGTGTTTTGCACCATACTCTTCAAGAAGACATGGAGGATTGCCTATTTCTCTCTTTTTGACAAGGCGTGTGACAAAATATACGTGTTTACTGTTGTTACTTGGGCAAGAGTATCTCAAAAGACGAATGTACAATAAGCTAATTGGAAAATTTGATTAGAACGACGTGCGTATGTTGGTGCTGGGTCACACTAAAAGCATCTAATACTCTAATGTGGTGTGGTGTGGCACAGTGATGCTTGTTTATTTAATTAGTTCTGTGTGTTGTATCTTAATAGGGATTATACGATATTATCCTTACTTTCC
More
|
||||||||||
| CDS seq | ATGGTTACGCTGATTCTTTCCTTCAACAACCTATCTGGCCATATTCCGGAATCCTTTTGCAGAATGGAACAGTTGGCCGCCTTGGACTTAGCAAACAATCTTTTTGAGGGAGAATTGCCTCAATGTTTCGGGATGACAGGTATGGCAATCGTTCTTTTACAAAACAATAGATTCTCTGGCTCGTTCCCAGTTTTCCTAGAACGCTCCACAAAGCTACAACTCGTAGATCTATCAAGGAACAATTTCTCCGGCAAATTACCAACGTGGATTGGTGACAAGAAGGAATTAGTGCTTTTGCTACTAAGCCACAATGTTTTCTCTGGGATTATTCCGATCAATATCACAAATCTTTCAAATCTTCGTCAATTGAACCTGGCAGGCAATAGTCTATCAGGTAACATACCTTGGCGTTTGTCAAATTTAGAGGCAATGAAGGAAGACAACTACATTTTTAACCTTGACATACCTGATGATAGCAGTTATAATAATTTATCCGTATTCACAAAGCGGACAGAACTTTTTTATGGTCCAAATATTTTCAGCGCGGTGAACATTGACTTGTCATCAAACTATTTAGTTGGTCAAATTCCAGAGGAAATAGCTTCTCTTGCACTTCTAAAAAATCTGAATTTGTCAAGGAATTACCTGAGTGGAAAAATCCCACAAAAAATTGGGTCGTTATGGTCACTGGAATCACTAGATCTCTCAAGGAACAAGCTTTCGGGGGAGATCCCTCCTAGCCTGTCAAATTTATCATATTTGAGTGATTTGGATTTATCACACAACAATCTATCGGGAAGAATACCATCGGGATCACAGCTTGACACCCTCTATTTTGAACATCCTGATATGTATAGCAGTAACGATGGTCTTTTCGGATTTCCTCTTCAAAGAAATTACTCGGAAGGAATTGCACCAAAGCAGGGCTATCACGATCATAGTAAAACCCGACAAGTAGCTGAGCCAATGTTCTTTTACCTTGGGCTTGTGTCAGGATTTGTTGTTGGCCTATGGGTGGTGTTTTGCACCATACTCTTCAAGAAGACATGGAGGATTGCCTATTTCTCTCTTTTTGACAAGGCGTGTGACAAAATATACGTGTTTACTGTTGTTACTTGGGCAAGAGTATCTCAAAAGACGAATGTACAATAA
More
|
||||||||||
| Protein seq | MVTLILSFNNLSGHIPESFCRMEQLAALDLANNLFEGELPQCFGMTGMAIVLLQNNRFSGSFPVFLERSTKLQLVDLSRNNFSGKLPTWIGDKKELVLLLLSHNVFSGIIPINITNLSNLRQLNLAGNSLSGNIPWRLSNLEAMKEDNYIFNLDIPDDSSYNNLSVFTKRTELFYGPNIFSAVNIDLSSNYLVGQIPEEIASLALLKNLNLSRNYLSGKIPQKIGSLWSLESLDLSRNKLSGEIPPSLSNLSYLSDLDLSHNNLSGRIPSGSQLDTLYFEHPDMYSSNDGLFGFPLQRNYSEGIAPKQGYHDHSKTRQVAEPMFFYLGLVSGFVVGLWVVFCTILFKKTWRIAYFSLFDKACDKIYVFTVVTWARVSQKTNVQ |
||||||||||
| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g35980 | LOC_Os11g35980.1 | Chr11 | 21145760 | 21148865 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTTACGCTGATTCTTTCCTTCAACAACCTATCTGGCCATATTCCGGAATCCTTTTGCAGAATGGAACAGTTGGCCGCCTTGGACTTAGCAAACAATCTTTTTGAGGGAGAATTGCCTCAATGTTTCGGGATGACAGGTATGGCAATCGTTCTTTTACAAAACAATAGATTCTCTGGCTCGTTCCCAGTTTTCCTAGAACGCTCCACAAAGCTACAACTCGTAGATCTATCAAGGAACAATTTCTCCGGCAAATTACCAACGTGGATTGGTGACAAGAAGGAATTAGTGCTTTTGCTACTAAGCCACAATGTTTTCTCTGGGATTATTCCGATCAATATCACAAATCTTTCAAATCTTCGTCAATTGAACCTGGCAGGCAATAGTCTATCAGGTAACATACCTTGGCGTTTGTCAAATTTAGAGGCAATGAAGGAAGACAACTACATTTTTAACCTTGACATACCTGATGATAGCAGTTATAATAATTTATCCGTATTCACAAAGCGGACAGAACTTTTTTATGGTCCAAATATTTTCAGCGCGGTGAACATTGACTTGTCATCAAACTATTTAGTTGGTCAAATTCCAGAGGAAATAGCTTCTCTTGCACTTCTAAAAAATCTGAATTTGTCAAGGAATTACCTGAGTGGAAAAATCCCACAAAAAATTGGGTCGTTATGGTCACTGGAATCACTAGATCTCTCAAGGAACAAGCTTTCGGGGGAGATCCCTCCTAGCCTGTCAAATTTATCATATTTGAGTGATTTGGATTTATCACACAACAATCTATCGGGAAGAATACCATCGGGATCACAGCTTGACACCCTCTATTTTGAACATCCTGATATGTATAGCAGTAACGATGGTCTTTTCGGATTTCCTCTTCAAAGAAATTACTCGGAAGGAATTGCACCAAAGCAGGGCTATCACGATCATAGTAAAACCCGACAAGTAGCTGAGCCAATGTTCTTTTACCTTGGGCTTGTGTCAGGATTTGTTGTTGGCCTATGGGTGGTGTTTTGCACCATACTCTTCAAGAAGACATGGAGGATTGCCTATTTCTCTCTTTTTGACAAGGCGTGTGACAAAATATACGTGTTTACTGTTGTTACTTGGGCAAGAGTATCTCAAAAGACGAATGTACAATAA
More
|
|||||||
| Protein seq | MVTLILSFNNLSGHIPESFCRMEQLAALDLANNLFEGELPQCFGMTGMAIVLLQNNRFSGSFPVFLERSTKLQLVDLSRNNFSGKLPTWIGDKKELVLLLLSHNVFSGIIPINITNLSNLRQLNLAGNSLSGNIPWRLSNLEAMKEDNYIFNLDIPDDSSYNNLSVFTKRTELFYGPNIFSAVNIDLSSNYLVGQIPEEIASLALLKNLNLSRNYLSGKIPQKIGSLWSLESLDLSRNKLSGEIPPSLSNLSYLSDLDLSHNNLSGRIPSGSQLDTLYFEHPDMYSSNDGLFGFPLQRNYSEGIAPKQGYHDHSKTRQVAEPMFFYLGLVSGFVVGLWVVFCTILFKKTWRIAYFSLFDKACDKIYVFTVVTWARVSQKTNVQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.026578 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0567600 | RBH | 0.039302 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35840 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0567600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017710 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017880 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017660 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017660 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0330800 | RBH | 0.126707 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018160 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0344100 | RBH | 1.287871 | 12.7846285 | 1.149585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018170 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017640 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017440 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017560 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017610 | RBH | 0.0 | 0.0 | 0.121813 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017920 | RBH | 0.0 | 0.0 | 0.0 |
