Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g29230 | OGI:11049470 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:16943497-16946706 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTGGCTTCCTCCGCCGATGCTTCCCTCCTCCTCCTCCACTCCCCTCTGACCGATGGCTTCCACCCCCTCCCTCTCCGTCTCCGCCGCCGCCGCCGTCTTCCCGTCGGCCGCTGACCCCCGCAGGCCGCCGCCGCCCTCCGTCGCCATCGTCGACAAGGTCTTTTTCTTTTTCTTCCTGTGGCCTAGCTTGCATTCTAAAAAAAAGAAAGAGCTCGAATCTTGTTGGGACTTCCCATTTTCTAGGCCCTAAGTTCGAAGATTGTTCGCTAATTATAGATCGCATTCTTGCCACTAATTAGCTTAGCAATGTGAATAATGCGAAAAGAAAAGAAGAAGCAGCTAGGATTAATTTGCGCTATGTCAAAATTGTGTTGTTGTTTTTTTTTCTTTTTCTGAATGTGAATAATGTTGAGCGTTTCTAGGTCTTAAGTTCGAAGATTACTTCGCTAATTATCGATCGCATTCTTGCCACCAATTAGCTTAGCAATGTGAATAATGCGAAAAAGAAAAGAAGAAGAAGCTAGGATTAATTTGCGCTATATGAAAATTGTATTGTTTTTTTTTTCCTGTTTTGTTTTGCAGAATAGTTCATATGGCAGGAGCTTGCAGGCGGCTGACAATGGCGGCGGCGGCGGCATGGAGGCTCCCCTTCGACCTCTGGATGTCCAGGAAGCGATGACCATGCTGACGGAGGGCAAGGCGGTGCAGTCAGCGATGTACGTGCCGCTGCTGCACCGGTGCGTCGAGACGGGGAGCCTCGGCGCCGCCAGGGCGGTGCACGGGCACATGGCGAAGACGGGCGCCAGCGCCGACATGTTCGTGGCGACGTCGCTGGTGAACGCCTACATGCGGTGCAGCGCGGCTCGGGACGCCCGCAGGCTGTTCGACGGAATGCCCGAGAGGAACGTGGTCACGTGGACGGCGCTCGTAACGGGGTACACCCTCAACTCTCAGCCGGCGCTGGGCCTGGAGGTGTTCGTCGAGATGCTGGAGATGGGGAGGTACCCGTCGCATTACACGCTCGGCGCGACGCTGAACGCGTGCCTGGCATCGTGCGATGTCGATTTGGGGAAGCAGGTTCATGGGTATGCGATTAAGTACGGGGCCGAGTCGATCACGAGCATGGGGAACTCGCTTTGCAGTCTGTATGCCAAGTTGGGGAGCTTGGATTCTGCGTTGAGGGCGTTCTGGAGGATCCCTGAGAAGAATGTGATCACGTGGACGACGATGATATCTGCGTGTGCCGAGGATGAGGAATGCGTGGAGCTTGGAATGAGCTTGTTTATCGATATGCTTATGGATGGGGTGATGCCGAATGAGTTCACATTGACAAGTGTCATGAGCTTGTGTGGTACAAGGCTGGATCTTAACCTGGGAAAGCAAGTTCAGGCCTTCTCCTTCAAAATTGGTTGTGAAACAAATCTTCCAGTGAAGAACTCGACAATGTACCTCTATCTGAGAAAGGGTGAAACTGATGAGGCGATGCGGTTGTTCGAACAGATGGAGGATGCCAGCATCATCACATGGAATGCAATGATCTCAGGCTATGCCCAGATCATGGACTCAGCAAAGGATGATCTCCAGGCTCGATCAAGAGGGTTCCAGGCGCTCACAATTTTCCGCGACCTCAAGAGGTCTGTGATGAAGCCGGATCTTTTCACTTTCTCAAGCATCCTATCTGTTTGCAGTGCCATGATGGCTTTGGAGCAGGGTGAGCAAATCCATGCGCAGACGATAAAGAGTGGCTTCTTGTCAGATGTTGTGGTGAACAGCGCACTGGTGAATATGTACAATAAATGTGGGTGTATTCAAGATGCAAACAAAGCCTTTCTTGAGATGCCAACACGAACTTTTGTCACATGGACTTCTATGATCTCAGGCTACTCGCAGCATGGCCAACCTCAGGAGGCGATACAACTCTTCGAGGAAATGAGATTAGCTGGGGTGAGGCCAAATGAAATCACATTTGTAAGTTTGCTCTCAGCTTGCAGCTATGCGGGTTTGGTTGAGGAAGCTGAGCATTACTTCGACATGATGAAGAAAGAGTATTGTATTGAACCTGTTGTGGATCACTATGGGTGCATGATCGACATGTTTGTGCGGTTGGGGCGGGTAGAGGATGCATTTTCCTTTATCAAAAGGACAGGTTTTGAGCCGAATGAGGCCATCTGGTCAAGTTTGGTTGCTGGATGCCGGAGCCATGGAAACATGGAACTTGCCTTCTACGCTGCCGATAAGCTGCTTGAGCTCAAGCCAAAAGGGATTGAAACCTATATCCTGCTGTTGAACATGTACATTTCCACAGAGAGATGGCAGGATGTGGCGAGAGTACGAAAGCTGATGAAACAGGAAGATGTTGGGATTCTTAGGGACCGCAGCTGGATTACGATAAAAGACAAGGTGTATTTCTTCAGAGCTAATGATAGAACTCATCCTCAAGCAACTGAGTTGTATCAACTATTGGAGAATCTGTTGGAGAAAGCTAAAGCCATTGGGTATGAACCATATCAGAATGCAGAGTTATCTGATAGCGAGGATGATGAGAAACCTGCCGCTGGATCACTAAAGCACCACAGTGAGAGGTTAGCTGTCGCGCTAGGGCTGCTGCAAACACCTCCAGGTGCCACGGTTCGCGTCACGAAGAACATCACCATGTGCAGGGACTGCCACAGCTCCATTAAGCTATTTTCGCTACTTGAAAACAGAGAAATCATTGTCCGGGACAGCAAACGGCTTCACAAGTTCAAGGATGGCCGGTGCTCCTGTGGAGATTTTGGTGCTCTATTGTGAGAAGGATGGAAATCTTACCCCCCACATGCTACTCTAGGAACTCAACAGTTTTGTAGTGGAAGCAGGGTTACAAGTTACAGGTTGCACAGAATTCTTTTGATGAACTGATCACCCTTTGTGATTTTTGTAGATCTTTGTATGAAATCGAAATTTATAAACTCAGGCAGTGTCCCCAAATGATCTGTACACAAGGTTAGCATTATAGGACAGTGAATACTTGTGAATCTGCTGTAAATGCTAAAATGCTAGCTTCTTAGGATCAGATCTAAGATTTTATTGTTTAAACTCACAATGCAATATGGCAGTAACCCCCATTCTTTGATCTTATACTAGGAGATCAGTGTAGCATACAAAAATATAGATGCTGTATAAATGATAGAGTTGTTTAATAAAAAGCATAGTGTTACTCGAAATATATA
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| CDS seq | ATGGCTTCCACCCCCTCCCTCTCCGTCTCCGCCGCCGCCGCCGTCTTCCCGTCGGCCGCTGACCCCCGCAGGCCGCCGCCGCCCTCCGTCGCCATCGTCGACAAGAATAGTTCATATGGCAGGAGCTTGCAGGCGGCTGACAATGGCGGCGGCGGCGGCATGGAGGCTCCCCTTCGACCTCTGGATGTCCAGGAAGCGATGACCATGCTGACGGAGGGCAAGGCGGTGCAGTCAGCGATGTACGTGCCGCTGCTGCACCGGTGCGTCGAGACGGGGAGCCTCGGCGCCGCCAGGGCGGTGCACGGGCACATGGCGAAGACGGGCGCCAGCGCCGACATGTTCGTGGCGACGTCGCTGGTGAACGCCTACATGCGGTGCAGCGCGGCTCGGGACGCCCGCAGGCTGTTCGACGGAATGCCCGAGAGGAACGTGGTCACGTGGACGGCGCTCGTAACGGGGTACACCCTCAACTCTCAGCCGGCGCTGGGCCTGGAGGTGTTCGTCGAGATGCTGGAGATGGGGAGGTACCCGTCGCATTACACGCTCGGCGCGACGCTGAACGCGTGCCTGGCATCGTGCGATGTCGATTTGGGGAAGCAGGTTCATGGGTATGCGATTAAGTACGGGGCCGAGTCGATCACGAGCATGGGGAACTCGCTTTGCAGTCTGTATGCCAAGTTGGGGAGCTTGGATTCTGCGTTGAGGGCGTTCTGGAGGATCCCTGAGAAGAATGTGATCACGTGGACGACGATGATATCTGCGTGTGCCGAGGATGAGGAATGCGTGGAGCTTGGAATGAGCTTGTTTATCGATATGCTTATGGATGGGGTGATGCCGAATGAGTTCACATTGACAAGTGTCATGAGCTTGTGTGGTACAAGGCTGGATCTTAACCTGGGAAAGCAAGTTCAGGCCTTCTCCTTCAAAATTGGTTGTGAAACAAATCTTCCAGTGAAGAACTCGACAATGTACCTCTATCTGAGAAAGGGTGAAACTGATGAGGCGATGCGGTTGTTCGAACAGATGGAGGATGCCAGCATCATCACATGGAATGCAATGATCTCAGGCTATGCCCAGATCATGGACTCAGCAAAGGATGATCTCCAGGCTCGATCAAGAGGGTTCCAGGCGCTCACAATTTTCCGCGACCTCAAGAGGTCTGTGATGAAGCCGGATCTTTTCACTTTCTCAAGCATCCTATCTGTTTGCAGTGCCATGATGGCTTTGGAGCAGGGTGAGCAAATCCATGCGCAGACGATAAAGAGTGGCTTCTTGTCAGATGTTGTGGTGAACAGCGCACTGGTGAATATGTACAATAAATGTGGGTGTATTCAAGATGCAAACAAAGCCTTTCTTGAGATGCCAACACGAACTTTTGTCACATGGACTTCTATGATCTCAGGCTACTCGCAGCATGGCCAACCTCAGGAGGCGATACAACTCTTCGAGGAAATGAGATTAGCTGGGGTGAGGCCAAATGAAATCACATTTGTAAGTTTGCTCTCAGCTTGCAGCTATGCGGGTTTGGTTGAGGAAGCTGAGCATTACTTCGACATGATGAAGAAAGAGTATTGTATTGAACCTGTTGTGGATCACTATGGGTGCATGATCGACATGTTTGTGCGGTTGGGGCGGGTAGAGGATGCATTTTCCTTTATCAAAAGGACAGGTTTTGAGCCGAATGAGGCCATCTGGTCAAGTTTGGTTGCTGGATGCCGGAGCCATGGAAACATGGAACTTGCCTTCTACGCTGCCGATAAGCTGCTTGAGCTCAAGCCAAAAGGGATTGAAACCTATATCCTGCTGTTGAACATGTACATTTCCACAGAGAGATGGCAGGATGTGGCGAGAGTACGAAAGCTGATGAAACAGGAAGATGTTGGGATTCTTAGGGACCGCAGCTGGATTACGATAAAAGACAAGGTGTATTTCTTCAGAGCTAATGATAGAACTCATCCTCAAGCAACTGAGTTGTATCAACTATTGGAGAATCTGTTGGAGAAAGCTAAAGCCATTGGGTATGAACCATATCAGAATGCAGAGTTATCTGATAGCGAGGATGATGAGAAACCTGCCGCTGGATCACTAAAGCACCACAGTGAGAGGTTAGCTGTCGCGCTAGGGCTGCTGCAAACACCTCCAGGTGCCACGGTTCGCGTCACGAAGAACATCACCATGTGCAGGGACTGCCACAGCTCCATTAAGCTATTTTCGCTACTTGAAAACAGAGAAATCATTGTCCGGGACAGCAAACGGCTTCACAAGTTCAAGGATGGCCGGTGCTCCTGTGGAGATTTTGGTGCTCTATTGTGA
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| Protein seq | MASTPSLSVSAAAAVFPSAADPRRPPPPSVAIVDKNSSYGRSLQAADNGGGGGMEAPLRPLDVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDFGALL |
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| Function | Pentatricopeptide repeat-containing protein At1g11290, chloroplastic [UniProtKB/Swiss-Prot:Q3E6Q1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g29230 | LOC_Os11g29230.1 | Chr11 | 16943497 | 16946706 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTTCCACCCCCTCCCTCTCCGTCTCCGCCGCCGCCGCCGTCTTCCCGTCGGCCGCTGACCCCCGCAGGCCGCCGCCGCCCTCCGTCGCCATCGTCGACAAGAATAGTTCATATGGCAGGAGCTTGCAGGCGGCTGACAATGGCGGCGGCGGCGGCATGGAGGCTCCCCTTCGACCTCTGGATGTCCAGGAAGCGATGACCATGCTGACGGAGGGCAAGGCGGTGCAGTCAGCGATGTACGTGCCGCTGCTGCACCGGTGCGTCGAGACGGGGAGCCTCGGCGCCGCCAGGGCGGTGCACGGGCACATGGCGAAGACGGGCGCCAGCGCCGACATGTTCGTGGCGACGTCGCTGGTGAACGCCTACATGCGGTGCAGCGCGGCTCGGGACGCCCGCAGGCTGTTCGACGGAATGCCCGAGAGGAACGTGGTCACGTGGACGGCGCTCGTAACGGGGTACACCCTCAACTCTCAGCCGGCGCTGGGCCTGGAGGTGTTCGTCGAGATGCTGGAGATGGGGAGGTACCCGTCGCATTACACGCTCGGCGCGACGCTGAACGCGTGCCTGGCATCGTGCGATGTCGATTTGGGGAAGCAGGTTCATGGGTATGCGATTAAGTACGGGGCCGAGTCGATCACGAGCATGGGGAACTCGCTTTGCAGTCTGTATGCCAAGTTGGGGAGCTTGGATTCTGCGTTGAGGGCGTTCTGGAGGATCCCTGAGAAGAATGTGATCACGTGGACGACGATGATATCTGCGTGTGCCGAGGATGAGGAATGCGTGGAGCTTGGAATGAGCTTGTTTATCGATATGCTTATGGATGGGGTGATGCCGAATGAGTTCACATTGACAAGTGTCATGAGCTTGTGTGGTACAAGGCTGGATCTTAACCTGGGAAAGCAAGTTCAGGCCTTCTCCTTCAAAATTGGTTGTGAAACAAATCTTCCAGTGAAGAACTCGACAATGTACCTCTATCTGAGAAAGGGTGAAACTGATGAGGCGATGCGGTTGTTCGAACAGATGGAGGATGCCAGCATCATCACATGGAATGCAATGATCTCAGGCTATGCCCAGATCATGGACTCAGCAAAGGATGATCTCCAGGCTCGATCAAGAGGGTTCCAGGCGCTCACAATTTTCCGCGACCTCAAGAGGTCTGTGATGAAGCCGGATCTTTTCACTTTCTCAAGCATCCTATCTGTTTGCAGTGCCATGATGGCTTTGGAGCAGGGTGAGCAAATCCATGCGCAGACGATAAAGAGTGGCTTCTTGTCAGATGTTGTGGTGAACAGCGCACTGGTGAATATGTACAATAAATGTGGGTGTATTCAAGATGCAAACAAAGCCTTTCTTGAGATGCCAACACGAACTTTTGTCACATGGACTTCTATGATCTCAGGCTACTCGCAGCATGGCCAACCTCAGGAGGCGATACAACTCTTCGAGGAAATGAGATTAGCTGGGGTGAGGCCAAATGAAATCACATTTGTAAGTTTGCTCTCAGCTTGCAGCTATGCGGGTTTGGTTGAGGAAGCTGAGCATTACTTCGACATGATGAAGAAAGAGTATTGTATTGAACCTGTTGTGGATCACTATGGGTGCATGATCGACATGTTTGTGCGGTTGGGGCGGGTAGAGGATGCATTTTCCTTTATCAAAAGGACAGGTTTTGAGCCGAATGAGGCCATCTGGTCAAGTTTGGTTGCTGGATGCCGGAGCCATGGAAACATGGAACTTGCCTTCTACGCTGCCGATAAGCTGCTTGAGCTCAAGCCAAAAGGGATTGAAACCTATATCCTGCTGTTGAACATGTACATTTCCACAGAGAGATGGCAGGATGTGGCGAGAGTACGAAAGCTGATGAAACAGGAAGATGTTGGGATTCTTAGGGACCGCAGCTGGATTACGATAAAAGACAAGGTGTATTTCTTCAGAGCTAATGATAGAACTCATCCTCAAGCAACTGAGTTGTATCAACTATTGGAGAATCTGTTGGAGAAAGCTAAAGCCATTGGGTATGAACCATATCAGAATGCAGAGTTATCTGATAGCGAGGATGATGAGAAACCTGCCGCTGGATCACTAAAGCACCACAGTGAGAGGTTAGCTGTCGCGCTAGGGCTGCTGCAAACACCTCCAGGTGCCACGGTTCGCGTCACGAAGAACATCACCATGTGCAGGGACTGCCACAGCTCCATTAAGCTATTTTCGCTACTTGAAAACAGAGAAATCATTGTCCGGGACAGCAAACGGCTTCACAAGTTCAAGGATGGCCGGTGCTCCTGTGGAGATTTTGGTGCTCTATTGTGA
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| Protein seq | MASTPSLSVSAAAAVFPSAADPRRPPPPSVAIVDKNSSYGRSLQAADNGGGGGMEAPLRPLDVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDFGALL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.586307 | 2.231643 | 0.055155 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0482400 | RBH | 2.608913 | 3.425447 | 0.221663 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g01115 | RBH | 0.584897 | 0.691456 | 0.102646 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0482400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013990 | RBH | 0.200013 | 0.0 | 1.237807 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013960 | RBH | 0.320604 | 0.0 | 0.687571 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013910 | RBH | 1.575268 | 0.783095 | 1.860479 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013730 | RBH | 0.341480 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014020 | RBH | 4.513353 | 0.0 | 3.352437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0261400 | RBH | 9.2254895 | 1.6440455 | 1.0250545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013980 | RBH | 0.239748 | 0.085167 | 0.254122 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0273400 | RBH | 7.511341 | 0.768705 | 3.900566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014070 | RBH | 0.326993 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014140 | RBH | 0.393095 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013790 | RBH | 3.391129 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013630 | RBH | 0.000000 | 0.0 | 0.243383 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013930 | RBH | 0.360864 | 1.665237 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013750 | RBH | 0.252015 | 0.0 | 0.892323 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013960 | RBH | 1.792657 | 0.000000 | 0.846725 |
