Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g17954 | OGI:11029120 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:10081786-10086180 | ||||||||
| Gene Symbol | MSL38, OsMSL38 | ||||||||||
| DNA seq | AGAATAATTTAGCTTGATACGGGATCAACATAAGAAGGTTCATAAATTGACAAAACTACTAATTAGTTCATAGACTGACAAAAGAACTTAGTCTATTACAATGATCCATACATCATTCATAGGCCATAACAGTGACCCATACAACGACATACTGAGTAGATAGTTAGAACACAAGTTCTGTTTTGATAAAATCGGTGGATTACTGAAAATTATGTAATAAGTAGCTTCTCTTGCTGAAGCACTGCCAAAACAAGCAGCCAAAATGAGCATCTTCGATACCTGCGTCATGAATTGTTCATAAAAAACAGGAGCATGATTATTATATAAAAATTGCAGCACATAAACTGGAAGTAAAACAACTAAGATGCAGCTAGAAGGAAGCTATACTATACAAAGCAGGTGCATACCTCTCAGAACCATAGCAGAAAGCACCAAAGTTTACCATGTCCTTGAAATAAATGAATAAATTAACTAATAAGGGAAGATGCTCAATATTGTAATGGAAAATGTGAAAACAGGATGCTTAATATCCTACCATAACTAAATGCGACGGGTACTACCAAACTTTTGCCAAATGTGTTCGACTAAGTCTTTTTTTACTTGGGAATGTGGTGCACGAGCACGTATTTCAGCCTTCCTGCGCAACACATCAAAAAAGCATGGACTATCACCAGTAGTTACTTCAGGAGGCAGAACAATTGATGCTCCAAGGTTCTCATTCAGATCAATAGGAATGATAACCCCCTCCCTCTCATCTTCAACTATCATATTATGGAGAATAACACACGCTTTCATGATTCTCCCAACACTCTTCCGTTTCCATGACCTTGCTGGACGACGCACAATATTGAAACGAGACTGCAAGACCCCAAATGCACACTCCACATCTTTCCTTGCTCCTTCTTGATATTGTGCATATAACTTGTGCTTCTCTGTTTGTGGAAGATGAATAGACTTCACAAAGGCAGCCCATTCTGGATATATTCCATTAGCAAGATAGTAACCTGTGCTATACTCATTCCCATTCACAGAAAACTTTACTTGAGGAGCATCCCCTTTTAGCACATCAAGAAACAGTGGGGATTGATTCAATACATTGATGTCATTGTTTGATCCAGCGACACCAAAGAAAGCATGCCATATGCGGAGGTCATAAGAAGCAACAGCTTCGAGGATAATTGTTGGTACTCCATAGTCACCGCGAGTAAACTGCCCACTCCATGCCGTCGGGCATTTTTCCCACCTCCAATGCATGCAGTCGATACTACCTAACATCCCAGGGAAGCCTCTAGACTCACCAACTTGAAGTAAACGCTCCACATCCTCACATGTAGGGCGTTGCAAAAACTCTGGGCCAAAGACCTCAATCACTCCTCGTGCAAACATGTCCAAGCACTGCAGGGACGTGCTCTTGCCAATCTTAAGGTACTCATCTAGGCTATCAGCAGGGCTACCGTATGCTAGCATACGTATTGCAGCTGTGCACTTCTGCAGAGGTGAGAGCCCTTGGCGACCACTACAATCTACCCTTTGTGTGAAGCAAGGAGACCACCTACCAAGGGAACTCACAATGTGTAGAAAAAAGGGGTCTTCCCATCTGAAATCTTGTACGAAACATTCTCTCTGGGTAGAGAGGGTCTTCACTGAAGTAGTCAGATACGAGACGATGGTGTGCATCAGCGTGATCCCTCTTGATTGTCTTCCTTGTAACACTCTTCTTACTTAATTTTCTAATTCTGAGCTTGGTCTTGATCTTTGCCATGATCCTTCTAGCAAAAGAATCTATGATGCCCTGCTCAGCAATATACTGTTCTATAATTTTGGAAGGGTCTAGTTCACCAGAGCCATCAGGAGACATGGTGGAAAGAAGTGGTGAAAGGATGGGAAAGAAGTGGTGAAAGAATTTGAGAGGGATGGATAGTTAGCACCATTAGACCAATATATATACATATAGGTAGATATATATGGGCTAAAGTTTCTGAGTTGACATGCTGACTACAGTTTTATTTGGATAAGTAATAACTGAACTATTATTGGGAATGCATATGGCTTGACTGCATGTTTATTTGAATTACTATTAATTGAACATTGGGACTGCATGCTTATTTGCAAACTGTTGACTTGATTGCAAGCCTATTTATACTATTAATTGAACATTGGGACTGCATGACTGCATGCTTATTTGCAAACTGTTGACTTGACTGTATTTTTTTTTGCAACTGTTGACTTGATTGCAAGCCTATTTACATGACTATTTGCAACTATTTCAATTGTGCTAAAAACATACATAAAATTTGCAGGGAGTAAATTTCAGCAAGTAGAAAAAAATATAGCATGCTTTAATTAGAGAATGGAATGTGACAGTACCTTAGTTTTAGGAAACAACTTTTCCCTCATACTCTTCAATGCCATCACATGCTCAAATCTGACATCATCAGGCATATCTTTTGTATCTTGCAACATGAGAGCCCGATATGTTTCCAACATAACCGCCTCCTTGTGCTCCATGGCTGCCAGGTGAGCTAACCTTTTTGATTCAAGATTCTCACTAGAAACACGCCTCTGAGTCTCCAGTAGCTCATCGCGACCTTTATCTGCCATGTTCTGAACTTCTTTAGGCTTGTCAATCTCATCATCCATATCCGATAGATAAACCTTTGCCTTCCTTTTGCGTTTGTCTTTACCATTACGCCGCGCCTTAGCAGCTTTGGTTCCTTCAGGACGTATAATATCTTCAGGGCTATTAGGAGTGGATGTAAGTTCCCTTACTTCCACTTCATTATCTGACTTTGTTTTGTTTGGCTTCTCAAGTTCCTCCAAGTAAGCATGCCACTTTGGTTGGTCACGGAGAGCTTTCCAACAATGCAGAAATGTAAATTGGCCTTCCTTGTAATCTGCTTCATATGTTGCATGGACCTTCTCCATCAATTGTAGTTCATTTTGTCCACTAACATAGATAGATTTCACCTCCTTATAAGCACAGCAAAAACGGCCAACATTTTTCTTAATTTTATGAAAGCGGTCCTTGATTTGTTTTTCTTGCCTCATCCTATTTCTCGGAGTGGTGCTATTGTAGGCAGTTGTAACATCTCCCCAATAACAATCATTTTTCTTGAAATTACCATTGATCGAATCATTCAAGTTGTTCAACCAAGCACTCACCTATAGTCAAAACAAAATAAGATTAGTCCTAAACTACAAACAAGATAATGACTCAATGAGAATACATGATTGATCCTCCTTATTTACTTACTAGCCTTATGTCCTCTTCATGTGTCCATGTCAACCGCTTCTCAGTCCTAACAGTGGGGGTTTCTTCACCACCACTATCAATGTTGATAGGGTGTTGTTCTCCTGGACCTGATTTTGTAACTGGACTTCGGTATTCTGCAGGTGAAGGTGCCCATGGTGCTGCTTGCTGAGTAGCATAATAATTTAGTGGTATAGAAGGTTGATGATTCTGTAAACTTGATGGATCCTGAAAGTAACTTAAGAATCCACCAGGTGGACGTGAGTCCATACCACTGCAAAATAGGCAAAGATACAAATTTAAAAATATTCCTAACCTATGGAGTAACGTAAGAATATTCTCCATGTATATGTAGATTAGTTAATTTCATTAGTCACTAACCTATGTATAGAAATAGTTATTGGTTGGTCACAGGGTGTCTGTGCATAAGTGCAATAAAATTTGATAAGGCACTATACTATATATGTAGCAGTAGTTCTTGCTATATAAATTAATCCACATGTATTTTGTAGTTGCTTACAACAAGAGTATTAAAAAAATTGCTAGCTGATCAAGACTACTTAGTCACTTCAGTATGACCAAGTAAGCAACAGATCTACACCATGAGTCCATTGACACATTAGCAGGAAATAATTTTAATAAGTTGTTCACAGATGGTCAGATCCTAAGGGGAAAACTACAACACGGCAAGAATCAAGCTTAATTAGTCAACATGTTTAATTTGCTAATCAAGATCGAAGCAACAACAAAAAAAAAAAACAGTAAGCGCAGAGGTGCTCTTTGCTTGTCGAACAAATCAATGCAACATCAAACAAAATCGAAAGCTTACCTTTCTTGCAGATCTGACAAGGAATCGTCCATGGAACTACGATCTGACCCTTGCTTCATCTGGGCCAGATGGGGAGCAGAAGTATTGGCGCCGTATGCAAATAATGGAGCCTGCGGCGGCTGCGGTGGCGCCATACCTTGCCAGCCACCAGGTGCAGCCGCTGTACCTTGCCAGCCACCGGGAGCAAAGGAGGCCTGCATCGGCGGAGTAGCCAGCCACATGCCAGATGGGAAGGATGCCGGCAAAGCTTGAGGTGGCGGGGCAACTTCCCGTTTCGATCGACCCATGGTATGGCAAGATTGTGTTGGGTGATTAG
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| CDS seq | ATGGGTCGATCGAAACGGGAAGTTGCCCCGCCACCTCAAGCTTTGCCGGCATCCTTCCCATCTGGCATGTGGCTGGCTACTCCGCCGATGCAGGCCTCCTTTGCTCCCGGTGGCTGGCAAGGTACAGCGGCTGCACCTGGTGGCTGGCAAGGTATGGCGCCACCGCAGCCGCCGCAGGCTCCATTATTTGCATACGGCGCCAATACTTCTGCTCCCCATCTGGCCCAGATGAAGCAAGGGTCAGATCGTAGTTCCATGGACGATTCCTTGTCAGATCTGCAAGAAAGTGGTATGGACTCACGTCCACCTGGTGGATTCTTAAGTTACTTTCAGGATCCATCAAGTTTACAGAATCATCAACCTTCTATACCACTAAATTATTATGCTACTCAGCAAGCAGCACCATGGGCACCTTCACCTGCAGAATACCGAAGTCCAGTTACAAAATCAGGTCCAGGAGAACAACACCCTATCAACATTGATAGTGGTGGTGAAGAAACCCCCACTGTTAGGACTGAGAAGCGGTTGACATGGACACATGAAGAGGACATAAGGCTAGTGAGTGCTTGGTTGAACAACTTGAATGATTCGATCAATGGTAATTTCAAGAAAAATGATTGTTATTGGGGAGATGTTACAACTGCCTACAATAGCACCACTCCGAGAAATAGGATGAGGCAAGAAAAACAAATCAAGGACCGCTTTCATAAAATTAAGAAAAATGTTGGCCGTTTTTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATTGATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCTGCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGAGAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCCTAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAATGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGATTGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGACTCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCATGGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAAAGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAAGTTGTTTCCTAAAACTAAGGTATCGAAGATGCTCATTTTGGCTGCTTGTTTTGGCAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATCAAAACAGAACTTGTGTTCTAACTATCTACTCAGTATGTCGTTGTATGGGTCACTGTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAA
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| Protein seq | MGRSKREVAPPPQALPASFPSGMWLATPPMQASFAPGGWQGTAAAPGGWQGMAPPQPPQAPLFAYGANTSAPHLAQMKQGSDRSSMDDSLSDLQESGMDSRPPGGFLSYFQDPSSLQNHQPSIPLNYYATQQAAPWAPSPAEYRSPVTKSGPGEQHPINIDSGGEETPTVRTEKRLTWTHEEDIRLVSAWLNNLNDSINGNFKKNDCYWGDVTTAYNSTTPRNRMRQEKQIKDRFHKIKKNVGRFCCAYKEVKSIYVSGQNELQLMEKVHATYEADYKEGQFTFLHCWKALRDQPKWHAYLEELEKPNKTKSDNEVEVRELTSTPNSPEDIIRPEGTKAAKARRNGKDKRKRKAKVYLSDMDDEIDKPKEVQNMADKGRDELLETQRRVSSENLESKRLAHLAAMEHKEAVMLETYRALMLQDTKDMPDDVRFEHVMALKSMREKLFPKTKVSKMLILAACFGSASAREATYYIIFSNPPILSKQNLCSNYLLSMSLYGSLLWPMNDVWIIVID |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g17954 | LOC_Os11g17954.1 | Chr11 | 10081786 | 10086180 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGTCGATCGAAACGGGAAGTTGCCCCGCCACCTCAAGCTTTGCCGGCATCCTTCCCATCTGGCATGTGGCTGGCTACTCCGCCGATGCAGGCCTCCTTTGCTCCCGGTGGCTGGCAAGGTACAGCGGCTGCACCTGGTGGCTGGCAAGGTATGGCGCCACCGCAGCCGCCGCAGGCTCCATTATTTGCATACGGCGCCAATACTTCTGCTCCCCATCTGGCCCAGATGAAGCAAGGGTCAGATCGTAGTTCCATGGACGATTCCTTGTCAGATCTGCAAGAAAGTGGTATGGACTCACGTCCACCTGGTGGATTCTTAAGTTACTTTCAGGATCCATCAAGTTTACAGAATCATCAACCTTCTATACCACTAAATTATTATGCTACTCAGCAAGCAGCACCATGGGCACCTTCACCTGCAGAATACCGAAGTCCAGTTACAAAATCAGGTCCAGGAGAACAACACCCTATCAACATTGATAGTGGTGGTGAAGAAACCCCCACTGTTAGGACTGAGAAGCGGTTGACATGGACACATGAAGAGGACATAAGGCTAGTGAGTGCTTGGTTGAACAACTTGAATGATTCGATCAATGGTAATTTCAAGAAAAATGATTGTTATTGGGGAGATGTTACAACTGCCTACAATAGCACCACTCCGAGAAATAGGATGAGGCAAGAAAAACAAATCAAGGACCGCTTTCATAAAATTAAGAAAAATGTTGGCCGTTTTTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATTGATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCTGCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGAGAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCCTAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAATGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGATTGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGACTCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCATGGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAAAGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAAGTTGTTTCCTAAAACTAAGGTATCGAAGATGCTCATTTTGGCTGCTTGTTTTGGCAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATCAAAACAGAACTTGTGTTCTAACTATCTACTCAGTATGTCGTTGTATGGGTCACTGTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAA
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| Protein seq | MGRSKREVAPPPQALPASFPSGMWLATPPMQASFAPGGWQGTAAAPGGWQGMAPPQPPQAPLFAYGANTSAPHLAQMKQGSDRSSMDDSLSDLQESGMDSRPPGGFLSYFQDPSSLQNHQPSIPLNYYATQQAAPWAPSPAEYRSPVTKSGPGEQHPINIDSGGEETPTVRTEKRLTWTHEEDIRLVSAWLNNLNDSINGNFKKNDCYWGDVTTAYNSTTPRNRMRQEKQIKDRFHKIKKNVGRFCCAYKEVKSIYVSGQNELQLMEKVHATYEADYKEGQFTFLHCWKALRDQPKWHAYLEELEKPNKTKSDNEVEVRELTSTPNSPEDIIRPEGTKAAKARRNGKDKRKRKAKVYLSDMDDEIDKPKEVQNMADKGRDELLETQRRVSSENLESKRLAHLAAMEHKEAVMLETYRALMLQDTKDMPDDVRFEHVMALKSMREKLFPKTKVSKMLILAACFGSASAREATYYIIFSNPPILSKQNLCSNYLLSMSLYGSLLWPMNDVWIIVID
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.184956 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0282700 | RBH | 0.0 | 0.0 | 0.740802 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0282700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010530 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0010450 | RBH | 0.0 | 0.0 | 1.002782 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0010440 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0017590 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0010500 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0154100 | RBH | 0.0121275 | 0 | 0.0126395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0155300 | RBH | 0 | 0 | 0.0477915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0010510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0010320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0067140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0010390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0010250 | RBH | 0.0 | 0.0 | 0.0 |
