Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g16970 | OGI:11027270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:9410401-9411512 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCCAACAATATAATGTGCATGACGATTTTATTAATTTCAAAAGGACTGTATCATGATAAAGTTCGGATCGATCGAGTATATGGATGAAGATCGATGATCAAATACAAAGTCACAATCGCCAAGAGCAGATATCATCGATGAAGATCTGCCACAACACAAGGAGAAGGGAATTAAAATAGAATCAAAGGTGAACGTCGATCACGATGAGACGAAGAGCTCGTGTCCATGGATGCACGCTGACGCCGGTGAGACGATATCGCTCGAGATTATCCATTATTCGTCATGAACAATGGCACACACGGCCTCCCAGCTCTCCCGGTAGAGCTGCCTCCGCGTCTCGGCGTGCACCTTCCCGTCCTCGCCAGCCGCCGGCCACTCGCCGACGAGCCTCTCCGCCTCCCGCACCACGCCGTCGCGGCTGGCCGCCTCGCCGTCGGCGAAGTACCACCTCCTCATCCAGCTGCCCGTGCGCGGCCTCGACTTGAGCGTCGTCAGCGTGTACCACCGGTCGGTCTTCTCCCGGACGAGCGCCGCCACGTGCGGTGGCACGGCGACGCCGTCCTCGACGTTGCCGAGCTTGTAGTAGGCGTCGCTGAGGACGACGAGGTCGTCGTGCGCGAGCGCCAGGGCGAGGCCCAGCGACGCCGCGCCCCCCGTGGCCGCGCACACTGTGGGCATCGGCATGGCGAGGAGCTCCCGCACCACGGCGGCCATGCCGTCGGCGAGGACCCTGGCCTGCTCGGCCACCGGAGCGGCCATGTTGGCCCGGAGGCTCTTGTGGTCGATGCCGTCGCAGAAGGAGCCCGTCGTCGGCGACGACGGCGAGGAGGAGGAGGAGGAGGAGGTGATGAGGCCTCGGCATGGCTCCGGCGACGACGAGGCGAGCTCGCGGATCTCTGCGAGCTTCTGCCTGAGCTCATGGAGAGCTTCCTTGGTTAGGTAGTGATGGCCATCGACTCCGGTGAGCTTCAGGTGAAAGACGCCGTCGTCGGTTTTCGCCCACTCACAGAAGGAGGACATTGTCATTCAGTCACTACTCTAGCTGATGCAGGAGTGAGGACTGGACTCTGCATACTGGCCCTTTGCCTAGCGACAAACGAATGCTGCTCAT
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| CDS seq | ATGACAATGTCCTCCTTCTGTGAGTGGGCGAAAACCGACGACGGCGTCTTTCACCTGAAGCTCACCGGAGTCGATGGCCATCACTACCTAACCAAGGAAGCTCTCCATGAGCTCAGGCAGAAGCTCGCAGAGATCCGCGAGCTCGCCTCGTCGTCGCCGGAGCCATGCCGAGGCCTCATCACCTCCTCCTCCTCCTCCTCCTCGCCGTCGTCGCCGACGACGGGCTCCTTCTGCGACGGCATCGACCACAAGAGCCTCCGGGCCAACATGGCCGCTCCGGTGGCCGAGCAGGCCAGGGTCCTCGCCGACGGCATGGCCGCCGTGGTGCGGGAGCTCCTCGCCATGCCGATGCCCACAGTGTGCGCGGCCACGGGGGGCGCGGCGTCGCTGGGCCTCGCCCTGGCGCTCGCGCACGACGACCTCGTCGTCCTCAGCGACGCCTACTACAAGCTCGGCAACGTCGAGGACGGCGTCGCCGTGCCACCGCACGTGGCGGCGCTCGTCCGGGAGAAGACCGACCGGTGGTACACGCTGACGACGCTCAAGTCGAGGCCGCGCACGGGCAGCTGGATGAGGAGGTGGTACTTCGCCGACGGCGAGGCGGCCAGCCGCGACGGCGTGGTGCGGGAGGCGGAGAGGCTCGTCGGCGAGTGGCCGGCGGCTGGCGAGGACGGGAAGGTGCACGCCGAGACGCGGAGGCAGCTCTACCGGGAGAGCTGGGAGGCCGTGTGTGCCATTGTTCATGACGAATAA
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| Protein seq | MTMSSFCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDHKSLRANMAAPVAEQARVLADGMAAVVRELLAMPMPTVCAATGGAASLGLALALAHDDLVVLSDAYYKLGNVEDGVAVPPHVAALVREKTDRWYTLTTLKSRPRTGSWMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLYRESWEAVCAIVHDE |
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| Function | Enoyl-CoA delta isomerase 1, peroxisomal [UniProtKB/Swiss-Prot:O04469] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g16970 | LOC_Os11g16970.1 | Chr11 | 9410401 | 9411512 | - | MSU_osa1r7 | ||
| CDS seq | ATGACAATGTCCTCCTTCTGTGAGTGGGCGAAAACCGACGACGGCGTCTTTCACCTGAAGCTCACCGGAGTCGATGGCCATCACTACCTAACCAAGGAAGCTCTCCATGAGCTCAGGCAGAAGCTCGCAGAGATCCGCGAGCTCGCCTCGTCGTCGCCGGAGCCATGCCGAGGCCTCATCACCTCCTCCTCCTCCTCCTCCTCGCCGTCGTCGCCGACGACGGGCTCCTTCTGCGACGGCATCGACCACAAGAGCCTCCGGGCCAACATGGCCGCTCCGGTGGCCGAGCAGGCCAGGGTCCTCGCCGACGGCATGGCCGCCGTGGTGCGGGAGCTCCTCGCCATGCCGATGCCCACAGTGTGCGCGGCCACGGGGGGCGCGGCGTCGCTGGGCCTCGCCCTGGCGCTCGCGCACGACGACCTCGTCGTCCTCAGCGACGCCTACTACAAGCTCGGCAACGTCGAGGACGGCGTCGCCGTGCCACCGCACGTGGCGGCGCTCGTCCGGGAGAAGACCGACCGGTGGTACACGCTGACGACGCTCAAGTCGAGGCCGCGCACGGGCAGCTGGATGAGGAGGTGGTACTTCGCCGACGGCGAGGCGGCCAGCCGCGACGGCGTGGTGCGGGAGGCGGAGAGGCTCGTCGGCGAGTGGCCGGCGGCTGGCGAGGACGGGAAGGTGCACGCCGAGACGCGGAGGCAGCTCTACCGGGAGAGCTGGGAGGCCGTGTGTGCCATTGTTCATGACGAATAA
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| Protein seq | MTMSSFCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDHKSLRANMAAPVAEQARVLADGMAAVVRELLAMPMPTVCAATGGAASLGLALALAHDDLVVLSDAYYKLGNVEDGVAVPPHVAALVREKTDRWYTLTTLKSRPRTGSWMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLYRESWEAVCAIVHDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0270000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0270000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010160 | RBH | 0.0 | 24.708750 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0010050 | RBH | 0.0 | 0.637452 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0010060 | RBH | 0.0 | 10.966265 | 0.314569 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010050 | RBH | 0.0 | 0.420850 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0010030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0145300 | RBH | 0.0371325 | 0.9834195 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010040 | RBH | 0.000000 | 0.100541 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0147600 | RBH | 0.0463215 | 1.067149 | 0.0451625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0010150 | RBH | 0.000000 | 0.109271 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0010010 | RBH | 0.0 | 5.678285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0066540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0010040 | RBH | 0.000000 | 5.668663 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010150 | RBH | 0.0 | 1.496801 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009920 | RBH | 0.0 | 7.109798 | 0.0 |
