Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g15010 | OGI:11024340 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:8447573-8449580 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGAAGATAGTTCACATGATATTGCATTCAGATAGCTCAATTTGTGACATAAGTTCAGACTGCATTAGTGTGTGGCAATATAGGCCTACACACAACAAATGGTCCATATCAGACATCACACACATTTGAAATGGTTCACAGATGGCAGCAAATGGCCAGGAATTGGTCCATTACAAAAACATCAAACATCATAGCTCTCAGACACAGGAGTCATTACAACACATTAACATAGTTCTAATATTAGTTAAATGGAGATGGCAGAACTTCAAAGCTTTGCAGACTCCCATGGTGGAAGAAGGAGTAGTGGCCCAGGTGTGGCTTTCTTTGGCTTCATCTTGACTGGTTCTTGAGCTGAAACGTTGACAACTGCTTTGCCACTATTCAACCTCACTGAAGCACTGGATGAAGCCTATGAGTATGGTACAATTGCATGCAGGTCTACAGTTGTTGTACCACCTTCATTTGTGGGAACTTATGCTGTGGCTGTCACTTTCACCATCTGTTGTGCCTCCTGCATTTGTGCCTGCATGTACAAGAAAGAGTTAGCACCAAGTTTGTTTCTATTAATTGGAGCAGCAATGAATGGATTATGAAATATGTGCATACCTTTCTCTTAGAAGGAGCTGGTCTCACTGAGTGTATTGCAGAACTAGTGCTGGTACTCGAGATTGACTTTCTTTTCCTACCCTGTGTATAGTTTGACAGTACTAAACCCCCTGCTGGGCTGACTGCATTGGTCCCTGCTGGGCTGCCTGTAGGGTGAGAAGCAGCTGTGCTAGGGCCCCCTGAACTATGTTTGTAACAAGTAGACTTGTTATGGCCAAACTATTTGCATTGCCTACATCTGATTTTTGTGCCCATCTTTGACATTCTGGTTGCCTTTGGAGCTTCAGTGGGTTCCCTTCTCCTCTCAGTCCTTGGCCTGCCTGGCATTTTGATATATCCAGGTGCATTGAGAGGTTGTCTGTCATCATATGGCCAGTTGTTCATGCCCTCAAATGGTTCCAGGCAATGGCTATAAGTTTTCTTGAATTCAGTCACTGAGTAGCAGTCACTAATGTATCCATCTAGTGAGTTTGTCTTGAAGAAGATACATGAGATTGCATGAGGGCATGGGAGTCCTGACAACTGCCAATATCTATAGGAACATGCCATTTTGTCTAGTTGCACTGTGAACCTATTATCATGGTGCTTAACTTCATAGCTAGATGCACCATTGCATATGGCATGGGAAAAGGCTGACTTAGTGATATATGCATTCAATTTTTTAAGAATACCAGGGCAGATAGCAGTGTTCCATCTAGCTGAGGTAGTAATCTGATCATGGATCCTAACCATAACTTTCCTTCTAATTGTTTCAAGCATAGTAATGATAGGAAAAAACCTAGCTTCCAAGATCCACTTGTTGAATGACTCACACAAGTTATTGTCTACGGAGTCACAATTGGAGCCTAACCTGAACCATGCCCTGCTCCAGTGCTGGGGGTGAGTGTTCATGATTGCTTGAGCTCCAGGTGGTGTCAGTTGTGCTAGCTTTGCCCTTGCCAGGTTGAACAGCAAGATGCATGGAGCCTTGGCACATCTCCAGAATTTCTTCTGCAATATCTTCTCATTGAAATGCCTTTTCCAATCAGCATAGATGTGCCTTGCACAATTCCTATGTTCAGCTTCTGGAGCCCATTTCTCAACTGCATTAATAATACCCTATAAGAAAACAGTGAGAACATTAGCCCTATTGCAAATCATGCACTTTCAGTCCTACAAGATTGAAAAAATGCTTCTTGGGAATACCTTTTGTTGGTCTGATATGAAAACCCAGCCACTGCCATCACCCACTTTCAAGTCACCACACAGCAAGTCTAGAAACCAATCCCACTCTTCATTGTTCTCCTTGTGAATCACTGCCCATGCCACTAGATACATTTGATTATTAGCATCCCTTCCAATTGCACAAAGGAGCTTTCCATTTGTTGCTCCCTTGAAGAAGCAACCATCCAGTCCTATCACTT
More
|
||||||||||
| CDS seq | ATGTATCTAGTGGCATGGGCAGTGATTCACAAGGAGAACAATGAAGAGTGGGATTGGTTTCTAGACTTGCTGTGTGGTGACTTGAAAGTGGGTGATGGCAGTGGCTGGGTTTTCATATCAGACCAACAAAAGGGTATTATTAATGCAGTTGAGAAATGGGCTCCAGAAGCTGAACATAGGAATTGTGCAAGGCACATCTATGCTGATTGGAAAAGGCATTTCAATGAGAAGATATTGCAGAAGAAATTCTGGAGATGTGCCAAGGCTCCATGCATCTTGCTGTTCAACCTGGCAAGGGCAAAGCTAGCACAACTGACACCACCTGGAGCTCAAGCAATCATGAACACTCACCCCCAGCACTGGAGCAGGGCATGGTTCAGGTTAGGCTCCAATTGTGACTCCGTAGACAATAACTTGTGTGAGTCATTCAACAAGTGGATCTTGGAAGCTAGGTTTTTTCCTATCATTACTATGCTTGAAACAATTAGAAGGAAAGTTATGGTTAGGATCCATGATCAGATTACTACCTCAGCTAGATGGAACACTGCTATCTGCCCTGGTATTCTTAAAAAATTGAATGCATATATCACTAAGTCAGCCTTTTCCCATGCCATATGCAATGGTGCATCTAGCTATGAAGTTAAGCACCATGATAATAGGTTCACAGTGCAACTAGACAAAATGGCATGTTCCTATAGATATTGGCAGTTGTCAGGACTCCCATGCCCTCATGCAATCTCATGTATCTTCTTCAAGACAAACTCACTAGATGGATACATTAGTGACTGCTACTCAGTGACTGAATTCAAGAAAACTTATAGCCATTGCCTGGAACCATTTGAGGGCATGAACAACTGGCCATATGATGACAGACAACCTCTCAATGCACCTGGATATATCAAAATGCCAGGCAGGCCAAGGACTGAGAGGAGAAGGGAACCCACTGAAGCTCCAAAGGCAACCAGAATGTCAAAGATGGGCACAAAAATCAGATGTAGGCAATGCAAATAG
More
|
||||||||||
| Protein seq | MYLVAWAVIHKENNEEWDWFLDLLCGDLKVGDGSGWVFISDQQKGIINAVEKWAPEAEHRNCARHIYADWKRHFNEKILQKKFWRCAKAPCILLFNLARAKLAQLTPPGAQAIMNTHPQHWSRAWFRLGSNCDSVDNNLCESFNKWILEARFFPIITMLETIRRKVMVRIHDQITTSARWNTAICPGILKKLNAYITKSAFSHAICNGASSYEVKHHDNRFTVQLDKMACSYRYWQLSGLPCPHAISCIFFKTNSLDGYISDCYSVTEFKKTYSHCLEPFEGMNNWPYDDRQPLNAPGYIKMPGRPRTERRREPTEAPKATRMSKMGTKIRCRQCK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g15010 | LOC_Os11g15010.1 | Chr11 | 8447573 | 8449580 | - | MSU_osa1r7 | ||
| CDS seq | ATGTATCTAGTGGCATGGGCAGTGATTCACAAGGAGAACAATGAAGAGTGGGATTGGTTTCTAGACTTGCTGTGTGGTGACTTGAAAGTGGGTGATGGCAGTGGCTGGGTTTTCATATCAGACCAACAAAAGGGTATTATTAATGCAGTTGAGAAATGGGCTCCAGAAGCTGAACATAGGAATTGTGCAAGGCACATCTATGCTGATTGGAAAAGGCATTTCAATGAGAAGATATTGCAGAAGAAATTCTGGAGATGTGCCAAGGCTCCATGCATCTTGCTGTTCAACCTGGCAAGGGCAAAGCTAGCACAACTGACACCACCTGGAGCTCAAGCAATCATGAACACTCACCCCCAGCACTGGAGCAGGGCATGGTTCAGGTTAGGCTCCAATTGTGACTCCGTAGACAATAACTTGTGTGAGTCATTCAACAAGTGGATCTTGGAAGCTAGGTTTTTTCCTATCATTACTATGCTTGAAACAATTAGAAGGAAAGTTATGGTTAGGATCCATGATCAGATTACTACCTCAGCTAGATGGAACACTGCTATCTGCCCTGGTATTCTTAAAAAATTGAATGCATATATCACTAAGTCAGCCTTTTCCCATGCCATATGCAATGGTGCATCTAGCTATGAAGTTAAGCACCATGATAATAGGTTCACAGTGCAACTAGACAAAATGGCATGTTCCTATAGATATTGGCAGTTGTCAGGACTCCCATGCCCTCATGCAATCTCATGTATCTTCTTCAAGACAAACTCACTAGATGGATACATTAGTGACTGCTACTCAGTGACTGAATTCAAGAAAACTTATAGCCATTGCCTGGAACCATTTGAGGGCATGAACAACTGGCCATATGATGACAGACAACCTCTCAATGCACCTGGATATATCAAAATGCCAGGCAGGCCAAGGACTGAGAGGAGAAGGGAACCCACTGAAGCTCCAAAGGCAACCAGAATGTCAAAGATGGGCACAAAAATCAGATGTAGGCAATGCAAATAG
More
|
|||||||
| Protein seq | MYLVAWAVIHKENNEEWDWFLDLLCGDLKVGDGSGWVFISDQQKGIINAVEKWAPEAEHRNCARHIYADWKRHFNEKILQKKFWRCAKAPCILLFNLARAKLAQLTPPGAQAIMNTHPQHWSRAWFRLGSNCDSVDNNLCESFNKWILEARFFPIITMLETIRRKVMVRIHDQITTSARWNTAICPGILKKLNAYITKSAFSHAICNGASSYEVKHHDNRFTVQLDKMACSYRYWQLSGLPCPHAISCIFFKTNSLDGYISDCYSVTEFKKTYSHCLEPFEGMNNWPYDDRQPLNAPGYIKMPGRPRTERRREPTEAPKATRMSKMGTKIRCRQCK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.273892 | 0.637096 | 0.333184 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0256400 | RBH | 1.909559 | 0.947434 | 1.337999 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0256400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0127400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0634600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
