Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g10400 | OGI:11015440 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:5645601-5648416 | ||||||||
| Gene Symbol | OsFbox594, Os_F0295, Fbox-1 | ||||||||||
| DNA seq | TGGGCTCCACAGATTGACGAGCATGCCAAAATACATTACATCATTTGTCCCAAAATATAAGAACCAAGACAAGACAACTTCGAATATGGACAAGAATATCACATATAGTACTATAGGTTTTTATATTTTGGGATAGAGGGTATCAAATGTGCATACTACTCCCCTCATTAAACATTTCAGGCGGAGCAATATTGACAGAGCCAGCTATGCTCAAGGTAGCAGATTCATATCTTCCCAGAGAGAATGAATCCGAGTTAAACTAGAGTCCAAAAGACATAGCATAGAATAGTTGGGTGGTATATAAGGCCTAACTAGATTACCTACACTTCCACATCCCTTTTAGGGCCCTGCAATTACAAATTCTGACTAGGTCATTTCGTCAGTTCTAAACCGTCCCTACGGGCTATGGCTGGAACTGACATGATACCTACAGACAGAACACGGCACCCTCGTCAGTCACTGCAAATTAAGAACCAACCCTCTGAATGGTGATAGAGTAGTAGATCCATGGACAGCTAAACTTTTAAACGCTACTCGAAACTGAAACCTGTCAATGAAAATGCAGGGTAAGTTAAAAGTTTGAGCATCATCTGCAGCAATTACAATGTTCAGTTACTTGAAAAAAAATTAAATACTAGAGCATACCACACAATGAGTTAATTTCAGAAATCCCATGCTCAGCAATTTGTTTCATATAACCCAATGGTTTAAAGGCTTTTTTTTTTAAAAAAAAAACAGCATATCTATGAATGTGCATGTGTATTACTCCTACATATAAACAAGATAACTCAAGGAGGTGACCAAATGCAAAATCAACTAACATACTACTATGAAGGTAAGCACTTCACTGGCCATTCATGTGAATGCAGTTAGCCTGAGTATATGAGGTAAGCCACCAAAAAAGATTGGACAAAAAAAAATATTAAAAGCAGAAAGACAGACAATCCTTCTATTGTTCAAACTAATAATCAACGAGCCAATTATCAGAACAAGTCAAATATTTTAAACTATTTGACAGATCAATATGTAAATGCACTTCATGATAAGTAAACCTCATATAGCTTTAGGCGTACCATCTGCCAACATAATGGAATAGAATGATTTCCCCACTCCCACCAAATACAGTGCAGGATTTTCAATAGCTTTTCAATAGAACTCCTATATCTTGATTTTCTATCAAATCAGGAATGCAACTAGCTTTCTTTCATGCATACGAAAGCTGAAGGCAATTTTCAGAAATATAGAAAGAATGAATAGTGTTGCTAGTTAGCTTACGAATACTGAATGCAGAGAGGAACTTCAAAACTTTGATAACTAAATCATCAATCTCATCAAATCTGACTACAACTATCTTAAGATATTCTGATATTGCAGATGACCTATCCATTCGACTATAGCTTCCTTTCATTTCCACCCTATCCGGTCCATGTCCCTGCAATAATAACAGCAACAAAAATAAAAATAAAACAATTGACCAAGATAAATCAGTGTTATGTAAAAATTGTAACGAGGAAGTGATTTTCCATTTAGAACACACACCATGCGATGAAACTGAAGAGTGAGATTCTCTAGAACTGGTGAGTGTCGAAGGATGCAACTAACAGCTTCAAAGTCAAGAACAGCAGATGCGCATGCACTGATTAACAAAGTCTTCAACTTGCTAAATGTAGGGCACCGTTGCCAGTACATTTCGAAATTAAACTGGACAAAAAGCAAACAGAAAAAGATTAACCAATACTCACAGTAAACATGTGGTCTAAGAATGCACATGTGGAGGCAGTGCATGAGAAGGCATAAGTGCATAACATACATCTTGTTCCTGAACTAACAACACCAACTTCTTGGCCTGTGATAAAGCTTCCGGACGGTATACCCTCAAACACAGGAGACTGGTTCATATAATTAACTAGACCAAGTGAGAGGAGATTCGGCGCATAAATGTGTGTGTGGAAAGTATCGCTGAAATTGCAACCGGAGATGTTTAGGTGTTTTATGGATAGGGAAGAGATCTTCCTGGCATTGGAATCAGACAAGTCGCAACCAGCAATCTCTAGATGTTGCAGCACCGGACAGCTCGAGAAATCAAGGAAATTGTGCATCAATTTGACACCATAAAGATCTAGCTTTTGCAAGTGCCGGGAGACGACAGGCAGGTTTTCTAGCTCGAGCTCGGATCCCCTGCTCACACGGATATCCAGCCGTAGCACCCGGGCCTGGCACATCACTGCATGCCGGAACCAGCGGTTCACGCGGAGGGTGTCCCGGTCGGACAGCTCGGCGAGATCGAGCTCGAATTCGTCGATAGGAGCGCGCCCGCGGCGGAGCAGGAGGTGGTGCACGAAATACCGGAACTCCTCCATGGGCACCACCTTCCTCCAGTCCCAGTTGGTGATGCGCAAGGCCGCGACGGACTTCCAGAGGTGGCGCCAGCGCCGCGCGAGCACGCAGGTCCGCACGGCCTCATGCGGCGGGAGGAAGCCGAGGATGTGTTGGAGGACACCATCCGGCAGACCCCCTATCCTATCGCCGCCGGTCGGAGGTGGGGCTTCCCCCGGAGGCATTCCGTCGAACAGGCGGCGTGCGTCGAGGCTGCAGCGCGAGCAGCAAATAGCTTGGAACTCACAATGGAGGATGCGAGCAAGAAGAGATGGAGGCCTCGCAGACTCGCAGTCGGCAGCCTCGGCCGCCGCACCGGAGGAGGAGAGTCGATCGACGCCAAGTTCTCCAAACCCTACTGCTGTGGGGATTGGGGAGTGAAGCACCATCGACCCCCGCAGCTGGCTGGAGCTGTGGAGCATGGAAGAATAAACTCGAGT
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| CDS seq | ATGCTCCACAGCTCCAGCCAGCTGCGGGGGTCGATGGTGCTTCACTCCCCAATCCCCACAGCAGTAGGGTTTGGAGAACTTGGCGTCGATCGACTCTCCTCCTCCGGTGCGGCGGCCGAGGCTGCCGACTGCGAGTCTGCGAGGCCTCCATCTCTTCTTGCTCGCATCCTCCATTGTGAGTTCCAAGCTATTTGCTGCTCGCGCTGCAGCCTCGACGCACGCCGCCTGTTCGACGGAATGCCTCCGGGGGAAGCCCCACCTCCGACCGGCGGCGATAGGATAGGGGGTCTGCCGGATGGTGTCCTCCAACACATCCTCGGCTTCCTCCCGCCGCATGAGGCCGTGCGGACCTGCGTGCTCGCGCGGCGCTGGCGCCACCTCTGGAAGTCCGTCGCGGCCTTGCGCATCACCAACTGGGACTGGAGGAAGGTGGTGCCCATGGAGGAGTTCCGGTATTTCGTGCACCACCTCCTGCTCCGCCGCGGGCGCGCTCCTATCGACGAATTCGAGCTCGATCTCGCCGAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGCCAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAAAACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATGCACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGCGACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCATAAAACACCTAAACATCTCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCACTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGCTTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAA
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| Protein seq | MLHSSSQLRGSMVLHSPIPTAVGFGELGVDRLSSSGAAAEAADCESARPPSLLARILHCEFQAICCSRCSLDARRLFDGMPPGEAPPPTGGDRIGGLPDGVLQHILGFLPPHEAVRTCVLARRWRHLWKSVAALRITNWDWRKVVPMEEFRYFVHHLLLRRGRAPIDEFELDLAELSDRDTLRVNRWFRHAVMCQARVLRLDIRVSRGSELELENLPVVSRHLQKLDLYGVKLMHNFLDFSSCPVLQHLEIAGCDLSDSNARKISSLSIKHLNISGCNFSDTFHTHIYAPNLLSLGLVNYMNQSPVFEGIPSGSFITGQEVGVVSSGTRF |
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| Function | Putative F-box protein At3g58860 [UniProtKB/Swiss-Prot:Q9LXR6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g10400 | LOC_Os11g10400.1 | Chr11 | 5645601 | 5648416 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTCCACAGCTCCAGCCAGCTGCGGGGGTCGATGGTGCTTCACTCCCCAATCCCCACAGCAGTAGGGTTTGGAGAACTTGGCGTCGATCGACTCTCCTCCTCCGGTGCGGCGGCCGAGGCTGCCGACTGCGAGTCTGCGAGGCCTCCATCTCTTCTTGCTCGCATCCTCCATTGTGAGTTCCAAGCTATTTGCTGCTCGCGCTGCAGCCTCGACGCACGCCGCCTGTTCGACGGAATGCCTCCGGGGGAAGCCCCACCTCCGACCGGCGGCGATAGGATAGGGGGTCTGCCGGATGGTGTCCTCCAACACATCCTCGGCTTCCTCCCGCCGCATGAGGCCGTGCGGACCTGCGTGCTCGCGCGGCGCTGGCGCCACCTCTGGAAGTCCGTCGCGGCCTTGCGCATCACCAACTGGGACTGGAGGAAGGTGGTGCCCATGGAGGAGTTCCGGTATTTCGTGCACCACCTCCTGCTCCGCCGCGGGCGCGCTCCTATCGACGAATTCGAGCTCGATCTCGCCGAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGCCAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAAAACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATGCACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGCGACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCATAAAACACCTAAACATCTCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCACTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGCTTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAA
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| Protein seq | MLHSSSQLRGSMVLHSPIPTAVGFGELGVDRLSSSGAAAEAADCESARPPSLLARILHCEFQAICCSRCSLDARRLFDGMPPGEAPPPTGGDRIGGLPDGVLQHILGFLPPHEAVRTCVLARRWRHLWKSVAALRITNWDWRKVVPMEEFRYFVHHLLLRRGRAPIDEFELDLAELSDRDTLRVNRWFRHAVMCQARVLRLDIRVSRGSELELENLPVVSRHLQKLDLYGVKLMHNFLDFSSCPVLQHLEIAGCDLSDSNARKISSLSIKHLNISGCNFSDTFHTHIYAPNLLSLGLVNYMNQSPVFEGIPSGSFITGQEVGVVSSGTRF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g10400 | LOC_Os11g10400.2 | Chr11 | 5646730 | 5648416 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTCCACAGCTCCAGCCAGCTGCGGGGGTCGATGGTGCTTCACTCCCCAATCCCCACAGCAGTAGGGTTTGGAGAACTTGGCGTCGATCGACTCTCCTCCTCCGGTGCGGCGGCCGAGGCTGCCGACTGCGAGTCTGCGAGGCCTCCATCTCTTCTTGCTCGCATCCTCCATTGTGAGTTCCAAGCTATTTGCTGCTCGCGCTGCAGCCTCGACGCACGCCGCCTGTTCGACGGAATGCCTCCGGGGGAAGCCCCACCTCCGACCGGCGGCGATAGGATAGGGGGTCTGCCGGATGGTGTCCTCCAACACATCCTCGGCTTCCTCCCGCCGCATGAGGCCGTGCGGACCTGCGTGCTCGCGCGGCGCTGGCGCCACCTCTGGAAGTCCGTCGCGGCCTTGCGCATCACCAACTGGGACTGGAGGAAGGTGGTGCCCATGGAGGAGTTCCGGTATTTCGTGCACCACCTCCTGCTCCGCCGCGGGCGCGCTCCTATCGACGAATTCGAGCTCGATCTCGCCGAGCTGTCCGACCGGGACACCCTCCGCGTGAACCGCTGGTTCCGGCATGCAGTGATGTGCCAGGCCCGGGTGCTACGGCTGGATATCCGTGTGAGCAGGGGATCCGAGCTCGAGCTAGAAAACCTGCCTGTCGTCTCCCGGCACTTGCAAAAGCTAGATCTTTATGGTGTCAAATTGATGCACAATTTCCTTGATTTCTCGAGCTGTCCGGTGCTGCAACATCTAGAGATTGCTGGTTGCGACTTGTCTGATTCCAATGCCAGGAAGATCTCTTCCCTATCCATAAAACACCTAAACATCTCCGGTTGCAATTTCAGCGATACTTTCCACACACACATTTATGCGCCGAATCTCCTCTCACTTGGTCTAGTTAATTATATGAACCAGTCTCCTGTGTTTGAGGGTATACCGTCCGGAAGCTTTATCACAGGCCAAGAAGTTGGTGTTGTTAGTTCAGGAACAAGATTTTAA
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| Protein seq | MLHSSSQLRGSMVLHSPIPTAVGFGELGVDRLSSSGAAAEAADCESARPPSLLARILHCEFQAICCSRCSLDARRLFDGMPPGEAPPPTGGDRIGGLPDGVLQHILGFLPPHEAVRTCVLARRWRHLWKSVAALRITNWDWRKVVPMEEFRYFVHHLLLRRGRAPIDEFELDLAELSDRDTLRVNRWFRHAVMCQARVLRLDIRVSRGSELELENLPVVSRHLQKLDLYGVKLMHNFLDFSSCPVLQHLEIAGCDLSDSNARKISSLSIKHLNISGCNFSDTFHTHIYAPNLLSLGLVNYMNQSPVFEGIPSGSFITGQEVGVVSSGTRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.099127 | 0.089957 | 0.093401 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0209600 | RBH | 0.073298 | 0.138100 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0209600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006940 | RBH | 0.072042 | 0.389919 | 0.259181 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006930 | SBH | 0.000000 | 0.000000 | 0.269492 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006830 | SBH | 0.054045 | 0.327524 | 0.558396 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006840 | SBH | 0.007779 | 0.047929 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006790 | SBH | 0.307655 | 0.691442 | 0.774625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | SBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006770 | RBH | 0.011060 | 0.088273 | 0.035899 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0090900 | SBH | 0.2881025 | 0.598182 | 1.705142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006760 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006830 | SBH | 0.021393 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006840 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006870 | SBH | 0.000000 | 0.0 | 0.052020 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006880 | SBH | 0.014501 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006890 | SBH | 0.039427 | 0.142880 | 0.072140 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006700 | RBH | 0.118869 | 0.0 | 0.998583 |
