Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g07740 | OGI:11012490 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:3952910-3953458 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAAGAGGATTGGCGGTGATGAGTGTACTCTTATTTGTGTTGGCCACTACTACTAAGGCTGACATGGAAGGCAGGTCTAGGCCCAACGCCTTAGGCAACAGTTTAGTGCCGACACACCTACACTTCTACTTCCATGACAAGGTGACCAGTCCGTCACCGTCAGCGGTGAGGGTAGTAAACCCGCCAAACAACACATCGTTGACCTTCTTGGGGATGGTGGTTGTCATGGATGACCCATTGACCGAACGGCCCGATCCCGCATCAAAGCTCGTGGGCCATGCCCAGGGCATGTATGTCTCGTCTGACCAAGCCCGGATAGGCTTCTTGCAGGCCATGAATATCGTGCTCACCGCTGGGTCGTATAATGGAAGCGTGGTCATAGTGCTTGGCAGCAACCACATATCCGACATTATCCATGAGATGCCGATTTTGGGCGGAACCGGCCACTTTCGCTTCGCTCGTGGCTATGCCCAAGCCCGCACCTACTTTCTCGACCCAAACGGACTTGATGCCATTGTCGAGTACAACGTTTATGTCTTCCATTGA
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| CDS seq | ATGGCAAGAGGATTGGCGGTGATGAGTGTACTCTTATTTGTGTTGGCCACTACTACTAAGGCTGACATGGAAGGCAGGTCTAGGCCCAACGCCTTAGGCAACAGTTTAGTGCCGACACACCTACACTTCTACTTCCATGACAAGGTGACCAGTCCGTCACCGTCAGCGGTGAGGGTAGTAAACCCGCCAAACAACACATCGTTGACCTTCTTGGGGATGGTGGTTGTCATGGATGACCCATTGACCGAACGGCCCGATCCCGCATCAAAGCTCGTGGGCCATGCCCAGGGCATGTATGTCTCGTCTGACCAAGCCCGGATAGGCTTCTTGCAGGCCATGAATATCGTGCTCACCGCTGGGTCGTATAATGGAAGCGTGGTCATAGTGCTTGGCAGCAACCACATATCCGACATTATCCATGAGATGCCGATTTTGGGCGGAACCGGCCACTTTCGCTTCGCTCGTGGCTATGCCCAAGCCCGCACCTACTTTCTCGACCCAAACGGACTTGATGCCATTGTCGAGTACAACGTTTATGTCTTCCATTGA
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| Protein seq | MARGLAVMSVLLFVLATTTKADMEGRSRPNALGNSLVPTHLHFYFHDKVTSPSPSAVRVVNPPNNTSLTFLGMVVVMDDPLTERPDPASKLVGHAQGMYVSSDQARIGFLQAMNIVLTAGSYNGSVVIVLGSNHISDIIHEMPILGGTGHFRFARGYAQARTYFLDPNGLDAIVEYNVYVFH |
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| Function | Dirigent protein 2 [UniProtKB/Swiss-Prot:Q9FIG7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g07740 | LOC_Os11g07740.1 | Chr11 | 3952910 | 3953458 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAAGAGGATTGGCGGTGATGAGTGTACTCTTATTTGTGTTGGCCACTACTACTAAGGCTGACATGGAAGGCAGGTCTAGGCCCAACGCCTTAGGCAACAGTTTAGTGCCGACACACCTACACTTCTACTTCCATGACAAGGTGACCAGTCCGTCACCGTCAGCGGTGAGGGTAGTAAACCCGCCAAACAACACATCGTTGACCTTCTTGGGGATGGTGGTTGTCATGGATGACCCATTGACCGAACGGCCCGATCCCGCATCAAAGCTCGTGGGCCATGCCCAGGGCATGTATGTCTCGTCTGACCAAGCCCGGATAGGCTTCTTGCAGGCCATGAATATCGTGCTCACCGCTGGGTCGTATAATGGAAGCGTGGTCATAGTGCTTGGCAGCAACCACATATCCGACATTATCCATGAGATGCCGATTTTGGGCGGAACCGGCCACTTTCGCTTCGCTCGTGGCTATGCCCAAGCCCGCACCTACTTTCTCGACCCAAACGGACTTGATGCCATTGTCGAGTACAACGTTTATGTCTTCCATTGA
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| Protein seq | MARGLAVMSVLLFVLATTTKADMEGRSRPNALGNSLVPTHLHFYFHDKVTSPSPSAVRVVNPPNNTSLTFLGMVVVMDDPLTERPDPASKLVGHAQGMYVSSDQARIGFLQAMNIVLTAGSYNGSVVIVLGSNHISDIIHEMPILGGTGHFRFARGYAQARTYFLDPNGLDAIVEYNVYVFH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0179500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07580 | SBH | 0.381300 | 0.777822 | 0.837537 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0179500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005290 | SBH | 0.0 | 147.436890 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005260 | SBH | 0.0 | 14.450221 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005290 | RBH | 0.0 | 104.447517 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005150 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005070 | SBH | 0.0 | 17.908464 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0066500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005150 | SBH | 0.0 | 8.071765 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0066300 | SBH | 0 | 0 | 0.05128 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005100 | SBH | 0.0 | 0.164604 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005190 | SBH | 0.0 | 38.102280 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005180 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005170 | SBH | 0.0 | 13.990444 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005230 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005120 | SBH | 0.0 | 30.921995 | 0.0 |
