Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g05410 | OGI:11007880 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:2432926-2437032 | ||||||||
| Gene Symbol | PAP20A, OsPAP20a | ||||||||||
| DNA seq | AACCGCCCTTTTTCATTTCATATCTATCCCCAGTGCCCCATTTCAGATTTGGCGAGACCAGCCATGGCGATGGCGATGACGAACACAGCATTGGCTTTCTTCCTCCTCGTCGCCGCCGCATCCCTCCTCTCGCTGCCGCCGCCGTCGCTCGCCGTCACGTCGCCGTACGTGCGCCCCAAGCCGAGGGCCACGCTGTCTCTGCTCAAGGACGACGACGACGGCCGGAAGCCGGAGCAGGTACTGAGTTTTTTATGTTTTTGATGACGGATTTGGCCGTAGTGAGTTTGAAATCTTCAAATAATTTTCATGCGTCAGTTCAATTTCTTAATATTTCTCAAATTTGCATGGTTATGTGGCTTTGCTCTTTGTTGGCCATCTAACTCAAGATTCAGTGTTGAGTGAAAGAAATGGTTTGGTCATCTTTGGTGCAAGAGTCCACCCAACCATAGTCTCATGTTGAGCAACCTGTTCTTTTTTTTAAGGAAAACCTGAGATTCATGTGACACAGCCTGGAGTCCCTCGTGATTATGGATTATATTAACCTAGGAAAGTGCAAAGTAGGAACGGATTATGCTTCATGGTTTAAATTTACCAACTTGGAGTATATCCTGGAACAAGAAACCGATTAATTTGCCAACTAATTAATCGGCATCTGTTTAGTCTAAATCTCACCTCGATCGATAAGGCGACCACACACAAGGAACAAGAAGCTCCTTTGGGTTTCTTGCTTTCCCACTCGTCTTGTTGTTTATCATTTCTGGCCATGTCGGCATGCTGGTTCGGCCGAGGTGTTATCTAGTGCTTGGCTGTTTCCTGCTCCATGATCACGAGCCCCTTTCGGTGGTTAGTGTTGCTGATACTGCAATTAATCACCATTGACACGGCTTCAAACTCTTGAGCCATGCATTCTCCATATCTTTTTTCTTCTTCTTTTTCCAGCAAATTAAACCATTAGTAGGAGTATTCAATTGGCCTGCCGCCCGCGTACGTGTCAGATTTCAGTATGGTCCTCGTGGAAACAATTATTGCAAACATACTACTCCACTGTACTGCCATGGGACAGCTCATGACACTATCAGGAGGCACTCTTAAAAATACTCATGTTTGCATTAGAGATTAGATAAGGGTTCTTTTGTGTTTGTGCAAGTTATGGTTGTAGGAAAGAAAGAAAGTATTTATTCTCGAGATAAGAAAAGAGAAAGTATTTATGAAAAGGAATAAAAACACTGCAACAATATAGAAGCTGAAGAAAGAAAGTCATTGGTAGTATATCCTGTAGACAGTTGCAGGCAGCAATTGCAAAATTCAGATATGTCAAGAAGAGACAGACGATATGTTCAGTCATGATGCTGACTTTAATTTTGCTCTTTTTTTCTTCAAGCCATAAATGGTAAAGGTGGCCTAACCAAACACTCCAAATCTAACACTCAATAACGTTTCTTGTTCGTTTTTGCCTTGGGAGTTTATGTTTCAAACTCTTCAACAACCTGTTAATATAGTGAGGTGGCTGGTCCGGTTTTAGTCGATCTGGTGAAGAAATGCTAGATGTTTCTGTTACGCAGTTGCATGAAGCAAGAAGCAAAAATATGCTTCCCAAGTTTAGTCACTGTCAGTACTGTATGACATGGCTTAGTACTGACAGAGAAGAGAACAAATCAAGGTTGGACCAATGTTCTGTCCAATGTTGAGTCAGTGAACAAAAGTCAACACGAAACTATGTGCTCCTATTTATTCACCTCAATTTATCATTCTGTTCATGATTTAGTCAGTACAATAATTTATTAAAACAGTGGTCCTTATTGATGTACACATATTACTTCATGTTTAGACAGATGTACACCTATGATTTAATCAAACATGGATATCTTAAATTACAATATAGGTTACTGTCTTGTTCATGGATCATCAAATTTTCAAAAAATACAGGCATCATCAAGTTGCATGGATGAATACAACTTATCAGTAGAATGCAATCCATGAATCTCATTTCAGCAAGATGCCTGTATTTTTTGATCCATGTCACTCTCATCTACTGACAATACAGGCATCATCAAGTTACATGGATATATCCATGTCACTCTCATCTTGTCAAAAAATACAGTCATGTCAGTAGAATGCAATCCATGAATATCATTTCAGCAAGATAGTAAAAAAAATATATGACAAGTAAAATGTGCTAATTAATTCGAAAGGTAGCCTGAACTCGGTGTACAGTTCAGATTCTCACTGAATTGGACCAGAATTCCACTGAAATGTTCTTCAGATAACTGAAATGCTTGACGACCTCTCTGAAGAAACTTCCTATTTTGGATGGAAATTTTCAGGTGCACATATCAGCAGTAGGCTCTGACAAGATGAGAGTGACATGGATCACCGGCGGCGACGCGCCGGCCACCGTGGAGTACGGCACGACCTCCGGCCAGTACCCGTTCTCGGCGACCGGAAGCACCAACACCTACTCCTACGTCCTCTACCACTCCGGCAACATCCACGACGTCGTCATCGGCCCACTGCAACCCAGCACCACCTACTTCTACCGCTGCAGCAACGACACCTCCCGCGAGCTCTCCTTCCGTACGCCGCCGGCGAGCCTCCCCTTCAAGTTCGTCGTCGCCGGTAAGCTTAGCTGCACTGCATGTGTTCGAATGCTTGTGTGAGCTTCGTGACATCGTGTTTAGTTCATTGTCAAAAGAAAATATTGACGTATATGGATATACATTTTAAGTTTAAACGTAGACTAATAACAAAACAAATTACAAATTCCGATTGTAAACTGTGAGACGAATCTTTTGAGCCTAATTAATCTGTCATTAGCATATGTGGGTTACTGTAGCACTTACAGCTAATCATGACGTAATTAGGCTTAAAAGATTCGTCTGGCGATTTACAGTTGAACTGTGCAATTAGTTTTTCTTTTTTTGTCCACATTTGATGTTCATACCTGTGTCTAAACATTTGATGTGACGGAAAAGTTGAAATCTAGACACAGCACTGACATGTCTCTCATGGCGGACGTTCCAGGTGATCTTGGGCAGACGGGATGGACGGAGTCGACGCTCCGGCACATCGGCGGCGACGACTACGACATGCTGCTGCTCCCCGGCGACCTGTCGTACGCCGACCTGTACCAGCCGAGGTGGGACACGTACGGCCGCCTCGTGGAGCCGCTGGCGAGCGCGCGGCCATGGATGGTGACGCAGGGGAACCACGAGGTGGAGAGGATCCCCCTCGTGGAGCCCCACGCGTTCAAGGCGTACAACGCGCGGTGGCGCATGCCGTTCGATGCCGGCGCGTCGCCGTCGGGGTCCAACCTCTACTACTCCTTCGACGTCGCCGGCGGCGCCGTGCACGTCATCATGCTGGGCTCCTACGCCGACTACGCCGCCGGCTCGGCGCAGCACCGGTGGCTGCGCCGCGACCTCGCCGCCGTCGACCGCGCCAGGGCGGCGTTCGTGGTGGCGCTGGTGCACGCGCCGTGGTACAACAGCAACGAAGCGCACCGGGGCGAGGGCGACGCCATGCGCGCCGCCATGGAGGAGCTCCTCCGCGGCGCGCGCGTGGACGCGGTGTTCGCCGGGCACGTCCACGCGTACGAGAGGTTCGCGCGGGTGTACGGCGGGAAGGAGGACCCGTGCGGCGCGGTGCACGTGACGATCGGCGACGGAGGGAACCGGGAGGGGCTCGCCGGGAGCTACGTCGACCCGCAGCCGGCGGCGTCGGCGTTCCGGGAGGCGAGCTTCGGGCACGGGAGGCTGGAGGTGGTGAACGCGACGCACGCGCTGTGGACGTGGCACCGGAACGACGACGACGAGGCGGTGGTCGCCGACCAGGCCTGGATCACCAGCCTCGCCTCCAACCCGGCTTGCAACAAGTGACCCCATCAATCCATCAGAAATTCAGAATGTAGCAGAAACAGATTTATGAATTATATAATTATATAAGTTAATTTATTGCATTGATATCGATAATTAGAAATTTAGCATTAGTACTTCTACAGTTCTATGTATGTTAGAAGATACTCTATCTGTCACATAACTTAGAACGAGATGTGAGCCTCTCATACTGATTTGTTTTTCTTATGATAGAAACCCAAACACGAGTTAAATC
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| CDS seq | ATGGCGATGGCGATGACGAACACAGCATTGGCTTTCTTCCTCCTCGTCGCCGCCGCATCCCTCCTCTCGCTGCCGCCGCCGTCGCTCGCCGTCACGTCGCCGTACGTGCGCCCCAAGCCGAGGGCCACGCTGTCTCTGCTCAAGGACGACGACGACGGCCGGAAGCCGGAGCAGGTGCACATATCAGCAGTAGGCTCTGACAAGATGAGAGTGACATGGATCACCGGCGGCGACGCGCCGGCCACCGTGGAGTACGGCACGACCTCCGGCCAGTACCCGTTCTCGGCGACCGGAAGCACCAACACCTACTCCTACGTCCTCTACCACTCCGGCAACATCCACGACGTCGTCATCGGCCCACTGCAACCCAGCACCACCTACTTCTACCGCTGCAGCAACGACACCTCCCGCGAGCTCTCCTTCCGTACGCCGCCGGCGAGCCTCCCCTTCAAGTTCGTCGTCGCCGGTGATCTTGGGCAGACGGGATGGACGGAGTCGACGCTCCGGCACATCGGCGGCGACGACTACGACATGCTGCTGCTCCCCGGCGACCTGTCGTACGCCGACCTGTACCAGCCGAGGTGGGACACGTACGGCCGCCTCGTGGAGCCGCTGGCGAGCGCGCGGCCATGGATGGTGACGCAGGGGAACCACGAGGTGGAGAGGATCCCCCTCGTGGAGCCCCACGCGTTCAAGGCGTACAACGCGCGGTGGCGCATGCCGTTCGATGCCGGCGCGTCGCCGTCGGGGTCCAACCTCTACTACTCCTTCGACGTCGCCGGCGGCGCCGTGCACGTCATCATGCTGGGCTCCTACGCCGACTACGCCGCCGGCTCGGCGCAGCACCGGTGGCTGCGCCGCGACCTCGCCGCCGTCGACCGCGCCAGGGCGGCGTTCGTGGTGGCGCTGGTGCACGCGCCGTGGTACAACAGCAACGAAGCGCACCGGGGCGAGGGCGACGCCATGCGCGCCGCCATGGAGGAGCTCCTCCGCGGCGCGCGCGTGGACGCGGTGTTCGCCGGGCACGTCCACGCGTACGAGAGGTTCGCGCGGGTGTACGGCGGGAAGGAGGACCCGTGCGGCGCGGTGCACGTGACGATCGGCGACGGAGGGAACCGGGAGGGGCTCGCCGGGAGCTACGTCGACCCGCAGCCGGCGGCGTCGGCGTTCCGGGAGGCGAGCTTCGGGCACGGGAGGCTGGAGGTGGTGAACGCGACGCACGCGCTGTGGACGTGGCACCGGAACGACGACGACGAGGCGGTGGTCGCCGACCAGGCCTGGATCACCAGCCTCGCCTCCAACCCGGCTTGCAACAAGTGA
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| Protein seq | MAMAMTNTALAFFLLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSDKMRVTWITGGDAPATVEYGTTSGQYPFSATGSTNTYSYVLYHSGNIHDVVIGPLQPSTTYFYRCSNDTSRELSFRTPPASLPFKFVVAGDLGQTGWTESTLRHIGGDDYDMLLLPGDLSYADLYQPRWDTYGRLVEPLASARPWMVTQGNHEVERIPLVEPHAFKAYNARWRMPFDAGASPSGSNLYYSFDVAGGAVHVIMLGSYADYAAGSAQHRWLRRDLAAVDRARAAFVVALVHAPWYNSNEAHRGEGDAMRAAMEELLRGARVDAVFAGHVHAYERFARVYGGKEDPCGAVHVTIGDGGNREGLAGSYVDPQPAASAFREASFGHGRLEVVNATHALWTWHRNDDDEAVVADQAWITSLASNPACNK |
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| Function | Probable purple acid phosphatase 20 [UniProtKB/Swiss-Prot:Q9LXI7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g05410 | LOC_Os11g05410.1 | Chr11 | 2432934 | 2437032 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGATGGCGATGACGAACACAGCATTGGCTTTCTTCCTCCTCGTCGCCGCCGCATCCCTCCTCTCGCTGCCGCCGCCGTCGCTCGCCGTCACGTCGCCGTACGTGCGCCCCAAGCCGAGGGCCACGCTGTCTCTGCTCAAGGACGACGACGACGGCCGGAAGCCGGAGCAGGTGCACATATCAGCAGTAGGCTCTGACAAGATGAGAGTGACATGGATCACCGGCGGCGACGCGCCGGCCACCGTGGAGTACGGCACGACCTCCGGCCAGTACCCGTTCTCGGCGACCGGAAGCACCAACACCTACTCCTACGTCCTCTACCACTCCGGCAACATCCACGACGTCGTCATCGGCCCACTGCAACCCAGCACCACCTACTTCTACCGCTGCAGCAACGACACCTCCCGCGAGCTCTCCTTCCGTACGCCGCCGGCGAGCCTCCCCTTCAAGTTCGTCGTCGCCGGTGATCTTGGGCAGACGGGATGGACGGAGTCGACGCTCCGGCACATCGGCGGCGACGACTACGACATGCTGCTGCTCCCCGGCGACCTGTCGTACGCCGACCTGTACCAGCCGAGGTGGGACACGTACGGCCGCCTCGTGGAGCCGCTGGCGAGCGCGCGGCCATGGATGGTGACGCAGGGGAACCACGAGGTGGAGAGGATCCCCCTCGTGGAGCCCCACGCGTTCAAGGCGTACAACGCGCGGTGGCGCATGCCGTTCGATGCCGGCGCGTCGCCGTCGGGGTCCAACCTCTACTACTCCTTCGACGTCGCCGGCGGCGCCGTGCACGTCATCATGCTGGGCTCCTACGCCGACTACGCCGCCGGCTCGGCGCAGCACCGGTGGCTGCGCCGCGACCTCGCCGCCGTCGACCGCGCCAGGGCGGCGTTCGTGGTGGCGCTGGTGCACGCGCCGTGGTACAACAGCAACGAAGCGCACCGGGGCGAGGGCGACGCCATGCGCGCCGCCATGGAGGAGCTCCTCCGCGGCGCGCGCGTGGACGCGGTGTTCGCCGGGCACGTCCACGCGTACGAGAGGTTCGCGCGGGTGTACGGCGGGAAGGAGGACCCGTGCGGCGCGGTGCACGTGACGATCGGCGACGGAGGGAACCGGGAGGGGCTCGCCGGGAGCTACGTCGACCCGCAGCCGGCGGCGTCGGCGTTCCGGGAGGCGAGCTTCGGGCACGGGAGGCTGGAGGTGGTGAACGCGACGCACGCGCTGTGGACGTGGCACCGGAACGACGACGACGAGGCGGTGGTCGCCGACCAGGCCTGGATCACCAGCCTCGCCTCCAACCCGGCTTGCAACAAGTGA
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| Protein seq | MAMAMTNTALAFFLLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSDKMRVTWITGGDAPATVEYGTTSGQYPFSATGSTNTYSYVLYHSGNIHDVVIGPLQPSTTYFYRCSNDTSRELSFRTPPASLPFKFVVAGDLGQTGWTESTLRHIGGDDYDMLLLPGDLSYADLYQPRWDTYGRLVEPLASARPWMVTQGNHEVERIPLVEPHAFKAYNARWRMPFDAGASPSGSNLYYSFDVAGGAVHVIMLGSYADYAAGSAQHRWLRRDLAAVDRARAAFVVALVHAPWYNSNEAHRGEGDAMRAAMEELLRGARVDAVFAGHVHAYERFARVYGGKEDPCGAVHVTIGDGGNREGLAGSYVDPQPAASAFREASFGHGRLEVVNATHALWTWHRNDDDEAVVADQAWITSLASNPACNK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g05410 | LOC_Os11g05410.2 | Chr11 | 2432926 | 2437032 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGATGGCGATGACGAACACAGCATTGGCTTTCTTCCTCCTCGTCGCCGCCGCATCCCTCCTCTCGCTGCCGCCGCCGTCGCTCGCCGTCACGTCGCCGTACGTGCGCCCCAAGCCGAGGGCCACGCTGTCTCTGCTCAAGGACGACGACGACGGCCGGAAGCCGGAGCAGGTGCACATATCAGCAGTAGGCTCTGACAAGATGAGAGTGACATGGATCACCGGCGGCGACGCGCCGGCCACCGTGGAGTACGGCACGACCTCCGGCCAGTACCCGTTCTCGGCGACCGGAAGCACCAACACCTACTCCTACGTCCTCTACCACTCCGGCAACATCCACGACGTCGTCATCGGCCCACTGCAACCCAGCACCACCTACTTCTACCGCTGCAGCAACGACACCTCCCGCGAGCTTCGGGCACGGGAGGCTGGAGGTGGTGAACGCGACGCACGCGCTGTGGACGTGGCACCGGAACGACGACGACGAGGCGGTGGTCGCCGACCAGGCCTGGATCACCAGCCTCGCCTCCAACCCGGCTTGCAACAAGTGACCCCATCAATCCATCAGAAATTCAGAATGTAG
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| Protein seq | MAMAMTNTALAFFLLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSDKMRVTWITGGDAPATVEYGTTSGQYPFSATGSTNTYSYVLYHSGNIHDVVIGPLQPSTTYFYRCSNDTSRELRAREAGGGERDARAVDVAPERRRRGGGRRPGLDHQPRLQPGLQQVTPSIHQKFRM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.391038 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0151800 | RBH | 0.0 | 0.0 | 1.982762 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g05540 | RBH | 0.091571 | 0.000000 | 0.255585 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0151800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003570 | RBH | 0.0 | 1.887864 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003640 | RBH | 0.0 | 0.0 | 0.231925 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003540 | RBH | 0.0 | 0.0 | 0.983917 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003470 | RBH | 0.0 | 0.000000 | 0.696771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0044400 | RBH | 0.1837255 | 0.2021155 | 2.776783 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0044300 | RBH | 0.4071235 | 0.0813055 | 0.7423765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003500 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003570 | RBH | 0.090196 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003560 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003550 | RBH | 0.0 | 0.0 | 2.222935 |
