Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g05394 | OGI:11007850 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:2418477-2423365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGAGCAAAGGATTCACCATTAATTATTGCACATGAATACGTTCCTACCAGCTGGTACTCTGCTGATATCTTATAAAACCCTATTTGGGGATTCTAATTATGATTGGGTCCTGAATTCAACAAGCCCTCTGAACAGCATCTAAGATCTGATTATATTGCACATGGAGATCCAACAAAAACAAAACAGTTAGGATCAGAACACATGGATACCAATACATGAGGCAGGTTTCTGTTGCATTAGATGGCGAGGAATGCTCTTCAGGTAATCTCGCTCATGGTCATAGTGATACAACCAAGACCAATTGAAGTGAAGAAATTTGTAGAAAAACTTGTGTTCTTTGGATGATCCCTTGGGAAGATAGAAAAGAAGTAATCTTGCATGTTAGGCTCATCCAATCTCTTAGAGTTGGACCAATACCAATATGCTCTGATAACTCCTGCATAGCACGAAAAAAAATACTTCAATTGTCTGATTTTGTTAAGGATGAATTAACATAGTGAAGTTGCACTATTAACAACATACTTCGGTCTCTCACATGATCTGAAGGTAGGAAGTAGGAACCAATATCTCGGTTAATATGATTGGGTTCTCAATTTAGTAAGCACCAACAGCTAGATCAGATACTGCACGTAGATAAAAATACAGGAGAATCCCAGAACCATGGTAGAATTTACATGAAAATCTTCTTCCACCTCTTACTTCTTCCGCCTCTTGTTTCGCTTCCTGTCACTCTCATCAGAACTTGATTCCGATTCTGAGCTGTAGCTGTCTGAACCAGACCCTGAATCACTTGAGTCTGATTCAGACGAGGCAGGCTTCTGTTTTTGCATTATTAGCCGTGGCATGTTCTTCAAATACTCTCTCAGAGTCTCTGTGATACCACCCAGTCCAATGGAAGTGAAGAAATTTATGGAAAACCTGGTATTCTTCGGATGATCCTTTGGGAAGATCGAATCGAAAGAATCTTGCATGTTAGGATCATTTAGTCTTTCATTGAGTAGACGAATACCAAGATGCTCTGATAATTCCTGCATAACAAGAAACAAAACCTTCAATTGCTTGCTTTGGTAAAGATGAATCGACATATGTAGTAAAGAAAAGGCATAATTTTAACAGCATACCTGGAAGAGTATTTTTATGAAAATTCTAGAAGATGACGTGGTGTCCTCCTCTGTCAAACGGATGTAAGCTAAAACATGCCAAGGAAGCGCGTCGGTGCCCAACAAATGCGCAAAAAATTTAGCAACATTTCTCAGTTTGTTTGTTTCCAGACGATGTATCATGGAATATTGTTGCACGAAACATTTCTCAAAGTTATCTTGGTAAACTTTGTTAATCATGCAAAATCGCTGCCCTAGCAATCCATAATATCGCAGGTATGTTCTCTCTTGGCTGCAGCACTCAAGCAGCATGATGCACAATTCCATCTGTTAAATGAAATAAACAGTTAGCTTTGCTAAAAATCACTATATTTTGCAAACTCAGAACTGAAGGGCCAAAGAAATCAATCAGATTATATGAATTGAAGAGGGACTGTTTGAAATCGAGTATTGTGTTGTGCAAAACATGTGCCTGTCTTAGCATAAGAATGTTTCTTCACCATCATTTTTTGTATTGCATGTCGTTCAGTAATAGGATCTAGAATGAGGTAAGTAATTTTGCTTCACTTCAAAAATTTCTAGAAGCTCAAAATAGCTTGTGCAATTTCAGTGACTTCAGAAATTCAAAGAACTAACAAATAAGTTTAGCAACTGAACTACCAATTAGGTTTTATCAATGCAATATGTGAAAACTAGCAGATAATTTTAATCAGTTTAGTAACTGAACCTGAAAGATACATGACAAATGACCATGTAGTACATATAACAGTAGTCTAAGTCGCTACTTGTACACATGAAGCTAAGTCACATGAAAGGAGCACAATAAAGAAAACGGTAATTATAGACCATTCGTAAAACAGATGCATTAACTAATAACTACCCATTGGTGCCTTTTGTTAATCTAATAACTTGGTGCACAATATTCTTGATATACAAACCAGCACCAGAACTATCCGAATGGCAAGTGACTGCGCTGTTGAGACACAACATTCCGTGCATTATCACAAAAATTTGTTCTAGTTTGTTCATGAATTGAAAGATTGGAAAATAGATTCTAACAAACCGTAATGCTCACAGAAGGTGTTGTGTACAAGAAAGCAAAATAAAACACAAAAATAAGGAAATTTAAAAATACCATAGAAATTGAAAAACAATATTATAATACAGAAAAAGAGTCAACCTACAGTACTTACCTCTTGACCAGGCTCAAGTTTAATTTTTAGAAGCTTGTGACCAGCTTCTTCAAAATCAACACTTGACATGATTGTCGAGTAAATGGTTCTTCGAAGGTTAATGAGATTGGTCTCAGTTTGATCCCTAATCTCCATCTGCTCTTCGTCCTCTTCATCATCGGATTCTTCTTCAGCATCCTCATCAGAAGAATCATCAGACCCTTCTTCATCATCAGAAGATTCTGCTCCAAGGATGCTTCTTTTTAGGTTCTCATATGCCTTCTCATCTTCAGCAAAATTTGGATTTCCCCTGAAAACATCTGCAGGTTGGTAAAGGTAAGTGCAACACAACACGGAAGTGTTAAGATACATAGTAAATGCAAGAAAATTTCCAGATTCCTATGGGAACTGAACTGGTGTTTAAAATTCCATTAAAATACCAACATTTCAAAATAACTGAGGCTTTTATGTCATAAATATAGTAAACTGAAAAATGTTTGCATATGAAATAAAACCCTACTTAGATTAGTCTCAGGGTCTAGCTCATCCTCAAGGGATATCTCATGAGTAAATTGATCTTCCTGCTCCACAAGATCCAACTCTGGACGTATAGCAGGGAATCCCTTCACAGATATGATATCATATTGTCAGAATTTGTTATAGGAATGCATAGAAAAGGTAAAGAATTAGGAAAAATATGAATTTACCTGAAATTTAGCCTTTCGAATTGCAAAAAGGCCTTCGATCAGAAACTGCACACGCTTGTCTATTTCACCTTCCTGAAGAATGCCTCGAAATCTTTCAAAAATAGCTGTATAGATTAAGAAGGCGAATCCATTGAGAATGAAAATGGAACAAAATAAGAAAAATAGAGAAGTCATAAGGAGATCAAACAAATAACCAATGGTTCATGTTAGTTAACTTTGAAACAAATAAAAAGCTACATTTAGAAACAGAAAACGTGTTCAAATATCACAGTTTAAGCAGACAGACAAATATAGAACAAAAAGATATCCCCAGAAAATTGTATCCCAAAGAAAGTGTATTGAATTTCAGACAAAATCCAGATCATCCAGGTAAAGCTAAACATAATACTAGTGTAAAAAAAAGGGTCTAGACCTGCACTAAGGTTCACACATCCAATATTCCACAGATGAAATGAAACCGCCTAAGTCCAAAAATATGTCGTGAATACAGATGAGCTAGTCAAAAGGTTTAACAAGTCATTCACTCAAAAGTCATAATAAGCACTTATGGTAACAGCTGATCTGAAAAACTTACCATGAAGCCCTTGTGGAGACAAGTCCTGAAGCATTGCCCCACATTCTTTAACAAAACCCACCGCTACCTACCAGATAAGAAACATATCCATATGCTTCAGATATTGCATAAATGAAGACATGATCAACATAAAAGGACATAAGAAACAAGATATGCACCTCAACACTATCATCAGTTGGGTTCTCAAGCAGTACAGTAAGAAGCTCCAGTGCCACGAGCTCATGAGCAATGACCTGCCTGGTTAACCAAGTGTGCTATGAACTTGGTTGCTGCAAGCAGTTGTGGCTGCAATCAACAAGACAAATAGGTAAACAAACATGCATTACTCTAACATGGTGAAAAATTAACCAAGTATTTTCCAAATGATACTAGTTGTACTTGAGGCAATAGCAGTATTTTACATGTCAAGCTGAAAAGGAGAATTGAGGAAGGTCACCTTGTCGTTTCGCTTATATGCTCTCTTGAGCTGAAGCACGACGCGAACAAGAAGCAGGCGACCAATCTCAGGGAACTTGGTATTCACAATGGCGACGAGCGCAGCAAACACGTCGGTGAAGCCAGGTGAAGCCATCTGCGACTTGATGCACGATTGGCAGAAAAGCCCCCGCCCACGAACCAGGTTCTCGGCGAACAGCTCCGGCACAATATTCTTTACGTTGGTAGCATTCACCTTGTTCACCAGGCCATTGATGCTCTTCTTGAGCGCGTCCCAGCTGAGGCGCTGGTACTCGGCGCTCGACTTGTCCTCCACCTCCCTCATCATCTGCGCCATGCGGAAAGGCGGGATGTAGATCCCTCCTGTGCGCCCTGGTATCATCTCCGGTAGAAGCGGCGGCGGCGGAGTCGGCTCCTTCCTCCTCTGAGGGCTCCTCCGGCGCCGCTCATCATGACCACCCCTGTCCCGGCGGTGGCTCTGGTCTCTCTGCCGCCTCCTGGAGCTCTCGTCATGGCGGTGCCGACGGCTACGGTCATCATCGCCGGAGGACGAACACGACTCTGAGCTGGGGCTCCGGCGGCGGTGGCGCCGGGTGTCGAGGTCGCGCTCGCCGCTCTCGTCGTCAGAGTCCCGCCTCCGGCGACGGCTGTCCAGCTCAGGGGCGGATCTGACTTGCGACATTGGGGTCCAGATCTAGAAGAGAGGCTAGGGTTTAACGCGAATTCGAGGGGGAAAAAAGCGCATGCGTGGGTAGAGAGAGATGAGGAAGAGGATGCGCATAAACGGGGATGGATGCTCACCGGACACCGGGATTGCGGCGGAAGCAGCACGACGGCGGCGCAGCCCTGCTCGGCGGCGGAAGCCGGAGAGGGTGCGCCCCGGCGGCCGCAGTGATGGTAT
More
|
||||||||||
| CDS seq | ATGCTTCAGGACTTGTCTCCACAAGGGCTTCATGCTATTTTTGAAAGATTTCGAGGCATTCTTCAGGAAGGTGAAATAGACAAGCGTGTGCAGTTTCTGATCGAAGGCCTTTTTGCAATTCGAAAGGCTAAATTTCAGGGATTCCCTGCTATACGTCCAGAGTTGGATCTTGTGGAGCAGGAAGATCAATTTACTCATGAGATATCCCTTGAGGATGAGCTAGACCCTGAGACTAATCTAAATGTTTTCAGGGGAAATCCAAATTTTGCTGAAGATGAGAAGGCATATGAGAACCTAAAAAGAAGCATCCTTGGAGCAGAATCTTCTGATGATGAAGAAGGGTCTGATGATTCTTCTGATGAGGATGCTGAAGAAGAATCCGATGATGAAGAGGACGAAGAGCAGATGGAGATTAGGGATCAAACTGAGACCAATCTCATTAACCTTCGAAGAACCATTTACTCGACAATCATGTCAAGTGTTGATTTTGAAGAAGCTGGTCACAAGCTTCTAAAAATTAAACTTGAGCCTGGTCAAGAGATGGAATTGTGCATCATGCTGCTTGAGTGCTGCAGCCAAGAGAGAACATACCTGCGATATTATGGATTGCTAGGGCAGCGATTTTGCATGATTAACAAAGTTTACCAAGATAACTTTGAGAAATGTTTCGTGCAACAATATTCCATGATACATCGTCTGGAAACAAACAAACTGAGAAATGTTGCTAAATTTTTTGCGCATTTGTTGGGCACCGACGCGCTTCCTTGGCATGTTTTAGCTTACATCCGTTTGACAGAGGAGGACACCACGTCATCTTCTAGAATTTTCATAAAAATACTCTTCCAGGAATTATCAGAGCATCTTGGTATTCGTCTACTCAATGAAAGACTAAATGATCCTAACATGCAAGATTCTTTCGATTCGATCTTCCCAAAGGATCATCCGAAGAATACCAGGTTTTCCATAAATTTCTTCACTTCCATTGGACTGGGTGGTATCACAGAGACTCTGAGAGAGTATTTGAAGAACATGCCACGGCTAATAATGCAAAAACAGAAGCCTGCCTCGTCTGAATCAGACTCAAGTGATTCAGGGTCTGGTTCAGACAGCTACAGCTCAGAATCGGAATCAAGTTCTGATGAGAGTGACAGGAAGCGAAACAAGAGGCGGAAGAAGTAA
More
|
||||||||||
| Protein seq | MLQDLSPQGLHAIFERFRGILQEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDELDPETNLNVFRGNPNFAEDEKAYENLKRSILGAESSDDEEGSDDSSDEDAEEESDDEEDEEQMEIRDQTETNLINLRRTIYSTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVYQDNFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLNDPNMQDSFDSIFPKDHPKNTRFSINFFTSIGLGGITETLREYLKNMPRLIMQKQKPASSESDSSDSGSGSDSYSSESESSSDESDRKRNKRRKK |
||||||||||
| Function | Pre-mRNA-splicing factor CWC22 homolog [UniProtKB/Swiss-Prot:Q9HCG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g05394 | LOC_Os11g05394.1 | Chr11 | 2418477 | 2423363 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTTCAGGACTTGTCTCCACAAGGGCTTCATGCTATTTTTGAAAGATTTCGAGGCATTCTTCAGGAAGGTGAAATAGACAAGCGTGTGCAGTTTCTGATCGAAGGCCTTTTTGCAATTCGAAAGGCTAAATTTCAGGGATTCCCTGCTATACGTCCAGAGTTGGATCTTGTGGAGCAGGAAGATCAATTTACTCATGAGATATCCCTTGAGGATGAGCTAGACCCTGAGACTAATCTAAATGTTTTCAGGGGAAATCCAAATTTTGCTGAAGATGAGAAGGCATATGAGAACCTAAAAAGAAGCATCCTTGGAGCAGAATCTTCTGATGATGAAGAAGGGTCTGATGATTCTTCTGATGAGGATGCTGAAGAAGAATCCGATGATGAAGAGGACGAAGAGCAGATGGAGATTAGGGATCAAACTGAGACCAATCTCATTAACCTTCGAAGAACCATTTACTCGACAATCATGTCAAGTGTTGATTTTGAAGAAGCTGGTCACAAGCTTCTAAAAATTAAACTTGAGCCTGGTCAAGAGATGGAATTGTGCATCATGCTGCTTGAGTGCTGCAGCCAAGAGAGAACATACCTGCGATATTATGGATTGCTAGGGCAGCGATTTTGCATGATTAACAAAGTTTACCAAGATAACTTTGAGAAATGTTTCGTGCAACAATATTCCATGATACATCGTCTGGAAACAAACAAACTGAGAAATGTTGCTAAATTTTTTGCGCATTTGTTGGGCACCGACGCGCTTCCTTGGCATGTTTTAGCTTACATCCGTTTGACAGAGGAGGACACCACGTCATCTTCTAGAATTTTCATAAAAATACTCTTCCAGGAATTATCAGAGCATCTTGGTATTCGTCTACTCAATGAAAGACTAAATGATCCTAACATGCAAGATTCTTTCGATTCGATCTTCCCAAAGGATCATCCGAAGAATACCAGGTTTTCCATAAATTTCTTCACTTCCATTGGACTGGGTGGTATCACAGAGACTCTGAGAGAGTATTTGAAGAACATGCCACGGCTAATAATGCAAAAACAGAAGCCTGCCTCGTCTGAATCAGACTCAAGTGATTCAGGGTCTGGTTCAGACAGCTACAGCTCAGAATCGGAATCAAGTTCTGATGAGAGTGACAGGAAGCGAAACAAGAGGCGGAAGAAGTAA
More
|
|||||||
| Protein seq | MLQDLSPQGLHAIFERFRGILQEGEIDKRVQFLIEGLFAIRKAKFQGFPAIRPELDLVEQEDQFTHEISLEDELDPETNLNVFRGNPNFAEDEKAYENLKRSILGAESSDDEEGSDDSSDEDAEEESDDEEDEEQMEIRDQTETNLINLRRTIYSTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVYQDNFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLNDPNMQDSFDSIFPKDHPKNTRFSINFFTSIGLGGITETLREYLKNMPRLIMQKQKPASSESDSSDSGSGSDSYSSESESSSDESDRKRNKRRKK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g05394 | LOC_Os11g05394.2 | Chr11 | 2418477 | 2423365 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGATTAGGGATCAAACTGAGACCAATCTCATTAACCTTCGAAGAACCATTTACTCGACAATCATGTCAAGTGTTGATTTTGAAGAAGCTGGTCACAAGCTTCTAAAAATTAAACTTGAGCCTGGTCAAGAGATGGAATTGTGCATCATGCTGCTTGAGTGCTGCAGCCAAGAGAGAACATACCTGCGATATTATGGATTGCTAGGGCAGCGATTTTGCATGATTAACAAAGTTTACCAAGATAACTTTGAGAAATGTTTCGTGCAACAATATTCCATGATACATCGTCTGGAAACAAACAAACTGAGAAATGTTGCTAAATTTTTTGCGCATTTGTTGGGCACCGACGCGCTTCCTTGGCATGTTTTAGCTTACATCCGTTTGACAGAGGAGGACACCACGTCATCTTCTAGAATTTTCATAAAAATACTCTTCCAGGAATTATCAGAGCATCTTGGTATTCGTCTACTCAATGAAAGACTAAATGATCCTAACATGCAAGATTCTTTCGATTCGATCTTCCCAAAGGATCATCCGAAGAATACCAGGTTTTCCATAAATTTCTTCACTTCCATTGGACTGGGTGGTATCACAGAGACTCTGAGAGAGTATTTGAAGAACATGCCACGGCTAATAATGCAAAAACAGAAGCCTGCCTCGTCTGAATCAGACTCAAGTGATTCAGGGTCTGGTTCAGACAGCTACAGCTCAGAATCGGAATCAAGTTCTGATGAGAGTGACAGGAAGCGAAACAAGAGGCGGAAGAAGTAA
More
|
|||||||
| Protein seq | MEIRDQTETNLINLRRTIYSTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVYQDNFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLNDPNMQDSFDSIFPKDHPKNTRFSINFFTSIGLGGITETLREYLKNMPRLIMQKQKPASSESDSSDSGSGSDSYSSESESSSDESDRKRNKRRKK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.298674 | 0.164769 | 0.127920 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0256300 | SBH | 3.308500 | 3.119117 | 5.027191 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g15420 | RBH | 1.981904 | 1.824848 | 1.125681 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0256300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003560 | RBH | 0.177922 | 1.837120 | 1.339715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003630 | RBH | 0.155058 | 4.253302 | 0.159483 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003530 | RBH | 0.571597 | 0.000000 | 2.977022 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003480 | RBH | 0.058908 | 0.026776 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003460 | SBH | 3.197220 | 0.000000 | 2.621275 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0044300 | SBH | 5.8615475 | 23.507117 | 7.9279895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003550 | SBH | 0.164096 | 0.472313 | 0.318808 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0044000 | SBH | 11.997958 | 3.058415 | 3.744712 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003440 | SBH | 0.353328 | 0.162859 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003550 | SBH | 0.694673 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003550 | SBH | 5.107077 | 2.544098 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003490 | RBH | 0.152272 | 0.0 | 0.272145 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003560 | SBH | 0.163198 | 1.575558 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003550 | RBH | 0.200868 | 0.000000 | 0.497951 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003540 | SBH | 0.440946 | 1.976421 | 0.683188 |
