Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g04670 | OGI:11006670 | 12/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:1989201-1995087 | ||||||||
| Gene Symbol | IPMS1, OsIPMS1 | ||||||||||
| DNA seq | CCCGTTGTCATGTCCAGATAAGAGCTCCCCCTCTGACTCACACACACATCACCGAGAAGCAGAGCAAGTGCATCTCCCTCTCCCACCATTTGATTCGATTCCCCTAAACCCCCGAGTCGTCGACGCCACAAACCCCGGCGACCACCATGGCCTCCTCCCTCCTCTCCTCCCCAAAACCCTCCTCCTTCTCCTCCGCAAACCCCACCTCCACTCCACGCCCACGCGCCCAAACTCTCTCCCCCTTCCGCGCCGCCGCCCCACGCTTCTCCCATGGCCTCGCCACCGCCGCCGCCGCCGCAAACCCTAGCGCCTCCCGCCGCTGCTACCACCGCGCCTTCGCCCGCCCCGTCCGGGCGTCCATGGCGCAGCCGCGGCGCCCGGAGTACGTCCCCAACCGCATCGACGACCCCAACTACGTCCGCATCTTCGACACCACCCTCCGCGACGGGGAGCAGTCCCCCGGGGCCACCATGACCAGCGCCGAGAAGCTCGTCGTCGCGCGCCAGCTCGCCCGCCTCGGCGTCGACATCATCGAGGCCGGGTTCCCGGCCTCCTCCCCCGACGACCTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGGAACACGCCCGTCGGGGAGGACGGCCACGTGCCGGTCATCTGTGGCCTCTCGAGATGCAATAAGCGAGACATTGATGCTGCCTGGGAGGCCGTGCGGCACGCGCGGCGGCCGCGCATCCACACCTTCATTGCCACCAGCGAGATCCATATGCAGCACAAGCTAAGGAAGACGCCCGAGCAGGTGGTGGCCATTGCCAAGGAAATGGTGGCCTACGCCCGCAGCCTAGGCTGCCCTGATGTCGAGTTCAGCCCTGAAGACGCTGGCAGGTATCACTTCTAATTGTAAATTTGTTCAACCTTTAGGTCCAATTTTTGAAATTGTAAGCCTTAAAATGACCAAAAGTTTCATACCTGGAGTAGGAATTACAATGTTGGTTGGAACTGGCATCTGACCTATTGGTTGGAGTAATAATCTAGATGTCTGAAAGTATTGTGAATGAAAGAGGTCCATCCTACTTTTGGGAAGCTAGGTTGATTTTGAGGCAAAGTGATATATACTTAGTATATGAAGCGCTTACTTTACTTTGGTCTGGAGATTAAGTACTATGCATCATGTATACCCTACTTTGAACACATTCATCATTGACTCAGTGATGCTGGCATGTATCACTTCTAACTGCAAATTTGTTTGATTTTTAGGCCACTATTTTTGGCCCCTTTGAATTGGAGGATTGTCAGAATTTTGGAAGATTTAATTTCCCAAGGAATTTTTCCTACGAAACCCTTTGATTCATAGGAAAGTATAGGAAATTTTCCTTAGGATTGCATTCCTATAGCTCAATTTCATAGGAAAATAAGCAAGAGGTTCAACCTCTTGGAAACTATCATTTTCTTTGTTTGTTTCCTATGATGCTATCAAAGGGACCCTTTTCATATTTCCTGTGTTTTCCATTCCTGTAGGATTAGGAAAACACACCACTTCAATTCCTGTGTTTTTCCTATTCCTGTGTTTTTTCTATCCTGCGTTTCAAAGGGGCCCTTAAACTGTAACCCTTGAAATGACCAAAAGTTTCATACCTGGAGTAGTAATTACAATGTGGTTCGGAACTGGCATCTGACTAATTAGCTAATAATCTAGATATTGGAAAGTACTGTGAATGAAAGAGGTCTATCCAACTTTTAATTGCAAATTCGTTCGATCATTAGGCTACTTTTAAAATAGTCAGCGTTGAAATGTCCAACAATTTCAGTCATTATGATGTGGGTTGGAATTGACACCATACCTAGTAATATATATGCCTAAGTACTGTGCATGTAAGAGGTCCATCCAACTTTAGTGAAGTGGGGTTGATTTTGAGGCGTGCAGTGTATGCCTAGTTGCTTACTATCAAGTACTGAATATACTTTGGTCTGTAAAGGAAAGTATTATGTATATTGTATCTTGGATACCTTCATCCTTGTACTGCTGGTAGATGTCTGCCAGCTACTGAAATTTTGTGGTTGTGTTCATCTTTAAATCTACACACGAAGCTTATTGTTGCATATCATTTACTGTACATTCTTTGCTTTCAAACATGTTGGTGCAAAATGAATGACTAAACATTAGCTCATGCCAAGCTATTGTCTGTGGTTTATTAGTCACAATCAATTAGCCTCCTTTTTTATGCGCAAAAGACTGTGGCATGATATTATTCACTCTGTCTTGCAGGTCAAACAGAGAGTTTCTATATCATATTCTAGAGGAAGTCATAAAAGCTGGAGCAACAACACTCAATATCCCAGACACTGTTGGATACACTCTTCCTTATGAATTTGGGAAGCTAATTGCTGATATAAAAGCAAACACTCCAGGAATTGAAAATGCTATTATTTCTACTCATTGCCAGAATGACCTTGGTCTAGCAACCGCCAATACATTAGCGGTACTACCTTTTCCATGTCTCTTTGATCCATTATCATTGGTTTAATCATGTCACTAATGTGACTTAACCTTTAGGGCGCTCATGCAGGAGCACGGCAATTAGAGGTGACTATCAACGGTATTGGTGAAAGGGCTGGAAATGCTTCTTTGGAAGAGGTGAGCTCGTATACTATGTTTATGTTGTTTGTTGGTATTTTGCACATGTTCATCTAAATGGTTTGTAGAAGAATGAATGCAAGTAATATTGATTTCCTATATGTGCAACTTTTTTTTAAAAAAAAAATCTTTTTCAGGTTGTGATGGCAATTAAATGTCGCCGAGAGCTCTTAGGAGGTCTGTATACTGGAATCAATACCCAACATATCACTATGTCAAGCAAAATGGTACAATTATGTTTGTTTTCTTGCTCTTTTTTTTTTATCTTTTGTCTTTTTCAGGTGACTGAAAATTTCATGCACTTCTGCAAATGCTCTGCCTATTCTAGGTACAAGAGCACAGTGGACTTCATGTACAACCACATAAAGCTATTGTCGGTGCCAATGCCTTTGCACATGAAAGTGGAATTCATCAGGTAACTAAATTTGCATTCTTGTCCTAATATTGCCATCAAATTTCTTGACTGGGTTCTCCGTAGTGCTGAAGGTGGTACCACAATGTCACATCTAGGTTCTTGTTTCTGTTTTTCATTTATCTATATTTTATAACTCTAAAAGTGTTTCTTGCCATCAATTTACATTTTAGGACTAAGGAATTGATTAGCATTACTGTTTATTTCCTATCTAAAATTTGGAAGTTTCAGAAATGTTTCTAGTTCTCAGTTTGCATATTTGCACTAGGAAAAAGTTTTGCTCACATTTTTATAGTATCACATACTGAGGGAAGTCAAATTATTTTTATGGATACCTTTTTTTAATCTCAGCTCCGAGGAATTCATTTTCTGATATATGATAGATCAATCATGGTTTTATATGAACCTTGCCTTGCATATTCTCATATTAACTGTGTTGGTTCTAGAGTGAAGTGATCTTGATATTCACTTTTGTTATTCTGTTTTCAGGATGGGATGCTTAAATACAAAGGAACTTATGAAATAATTTCTCCTGATGATATTGGTCTAACACGTGCAAACGAGTTTGGTATTGTTCTTGGGAAACTCAGGTATCATCCATACATATGTTCCCCCATAATTTGATTTCTTGCAAGTTGCAACATTCTCCCTGAGTGTTTCTCGAGGAGATATTTTTTCTACTTTATGCACTTTCTGCTAATTTGGTGCAAAATACACTTTCCAACTATCAAACACTTTATGTCGAATGGCCATATCATATGGATACTCCATGTAAGGTCTAAATTCCTAGAGATATGTATGCAGATCATGTCACAGTACAATTTTTACTTGAGAAATTGTGTGATGCCATCCTTTGCTTAAAGTTAGTGAATTTGCTTTTCTTTTTAAATTTTTTAGGTTAAACCTTGCTCACTTGACATTGAGGAAACCTCTACCTGGCCTGGTCATTTTTTTTATCTATTTATCATATGTTTTTCTGTACTTCTCTAGAATAGAGATATTCTTTTTCATCTTTACTCTTGTATATTAGGTGAGGTTGATGCAGCAATCCTGCTCAAATACTTACGATAGGCTTGCAATTATTACTTAAATCTGATTTGAGATTATCAAACTCAAGTTCATAATTATGCTTTCTTGTCTTTTTTTTTTCAGTGGAAGGCATGCTGTGAGATCTAAACTAGTGGAGGTATTGTATTTGTCTTTATTTTTCTAGTTAGGACTAAATGCCTTCTTTTCAGTTATCGTTGCTGAACACTACCTTGTCATCCAACACGTAGCTTGGATATGAAATCACTGACAAGGAATTTGAGGATTTCTTTAAACGCTACAAAGAGGTTGCAGAGAAGAAAAAGGTGACAGTTTCCTGAGTGCTCTGTTGCTCGATTGACATATTCAACCATTTTTTTTCTGTAAAACAGTAAGCATTTTGATAACTTCTAGCTTATGTGTTTTAAATCATTGTAGCGTGTAACTGATGAAGACATTGAGGCGCTGTTGTCTGATGAGATATTTCAGCCCAAGGTTTTTTGGTCCCTTGCTGATGTACAGGTATAATTTTGCCACATTTTACTATTTGGCTAATGGAGAAGTTGATATGTTAAAATTGATATGAAGCCTTTTTGCAGGCAACTTGTGGAACACTTGGTCTGTCTACAGCAACTGTCAAACTGATAGGTCCGGATGGAGAGGAGAAGATTGCATGTGCAGTTGGAACAGGTCCAGTTGATGCAGCTTACAAGGCTGTTGATGATATAATACAGGTGACAGTTGCAATATTCTTGATGGTTCTTGCACTAATATACCAGTTTAATGGGATGGAATATGGATGTGTTTTTTCAATATATGAGAATGAAACATCCTGCATCTGGTAACATAACTTTCAGCATGTTGCCTCCATGATAAATATACAAGAATCACAAGAATAGGAGATTCCATACTTAATAAGGATTAGCGTGTGATGTGTTACGACTTATGAGCATGCTTTCAACAAAATGAATGCACTATTTTGATGTTAACAGAGAAATTACCTACATCTACTTTCTTGATTTGTAAACTATCTGCATTCATTTTAGTAAAACTGGAGAAATTTTGAAACATCTAAGAATAATTTGCAATTCACAGATCCCAACTGTTCTTCGAGAATATAGCATGACATCGGTCACAGAAGGCATTGATGCAATTGCAACTACTAGAGTGGTTGTCACTGGAGATGTTAGCGACTCTAAACATGCTTTGACTGGTCACTCCTTCAGCCGGGCATTCAGGTTATAGTCCTTTATACTACCTTTTTTTTTTCACTGGGCACCTTCCTTCTATGTTGTTTCCAACATCTATAATTGTTATTATCAATTTAATTTTTCACATGAACTAATAATTTCTTTGCCTATTGATCTCAGTGGGAGTGGTGCCGCACTGGATATTGTTGTTTCCAGTGTGCGAGCTTACCTGAGTGCCCTGAACAAGATGTCCAGTTTTGTTGGGGCTATCAAGGCTAGTAGTGAAGTATCTGAAAGCCAAAGAGTTCAAACCACAGAATGAGTCTTGACTTCCTTTTGGGTTTTCATATCCGATGGTTCTATGTTTCACATTCCCAGCAAGGAGTATGTGCTTGTTGAAACATGGTTTTTCCGTCCAGAAAAAACATGGTTCCGTTTAGTGCATCTGGAGGATGTTCTGGGTTTCTTGGTGGAGCCTGACTTAAGGTTGAACATCCAGGACGTTTTGGGATATGCAGTGTATAATTCATATTTGAAAACCGTATTTACAATAAGACAATAATAAATAATTGTTTGACATATGAGTATTGCAAAACTATTACTGTAAGAAATTAATCGTGAGACCAACCTACGGTTGTACA
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| CDS seq | ATGGCCTCCTCCCTCCTCTCCTCCCCAAAACCCTCCTCCTTCTCCTCCGCAAACCCCACCTCCACTCCACGCCCACGCGCCCAAACTCTCTCCCCCTTCCGCGCCGCCGCCCCACGCTTCTCCCATGGCCTCGCCACCGCCGCCGCCGCCGCAAACCCTAGCGCCTCCCGCCGCTGCTACCACCGCGCCTTCGCCCGCCCCGTCCGGGCGTCCATGGCGCAGCCGCGGCGCCCGGAGTACGTCCCCAACCGCATCGACGACCCCAACTACGTCCGCATCTTCGACACCACCCTCCGCGACGGGGAGCAGTCCCCCGGGGCCACCATGACCAGCGCCGAGAAGCTCGTCGTCGCGCGCCAGCTCGCCCGCCTCGGCGTCGACATCATCGAGGCCGGGTTCCCGGCCTCCTCCCCCGACGACCTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGGAACACGCCCGTCGGGGAGGACGGCCACGTGCCGGTCATCTGTGGCCTCTCGAGATGCAATAAGCGAGACATTGATGCTGCCTGGGAGGCCGTGCGGCACGCGCGGCGGCCGCGCATCCACACCTTCATTGCCACCAGCGAGATCCATATGCAGCACAAGCTAAGGAAGACGCCCGAGCAGGTGGTGGCCATTGCCAAGGAAATGGTGGCCTACGCCCGCAGCCTAGGCTGCCCTGATGTCGAGTTCAGCCCTGAAGACGCTGGCAGGTCAAACAGAGAGTTTCTATATCATATTCTAGAGGAAGTCATAAAAGCTGGAGCAACAACACTCAATATCCCAGACACTGTTGGATACACTCTTCCTTATGAATTTGGGAAGCTAATTGCTGATATAAAAGCAAACACTCCAGGAATTGAAAATGCTATTATTTCTACTCATTGCCAGAATGACCTTGGTCTAGCAACCGCCAATACATTAGCGGGCGCTCATGCAGGAGCACGGCAATTAGAGGTGACTATCAACGGTATTGGTGAAAGGGCTGGAAATGCTTCTTTGGAAGAGGTTGTGATGGCAATTAAATGTCGCCGAGAGCTCTTAGGAGGTCTGTATACTGGAATCAATACCCAACATATCACTATGTCAAGCAAAATGGTACAAGAGCACAGTGGACTTCATGTACAACCACATAAAGCTATTGTCGGTGCCAATGCCTTTGCACATGAAAGTGGAATTCATCAGGATGGGATGCTTAAATACAAAGGAACTTATGAAATAATTTCTCCTGATGATATTGGTCTAACACGTGCAAACGAGTTTGGTATTGTTCTTGGGAAACTCAGTGGAAGGCATGCTGTGAGATCTAAACTAGTGGAGCTTGGATATGAAATCACTGACAAGGAATTTGAGGATTTCTTTAAACGCTACAAAGAGGTTGCAGAGAAGAAAAAGCGTGTAACTGATGAAGACATTGAGGCGCTGTTGTCTGATGAGATATTTCAGCCCAAGGTTTTTTGGTCCCTTGCTGATGTACAGGCAACTTGTGGAACACTTGGTCTGTCTACAGCAACTGTCAAACTGATAGGTCCGGATGGAGAGGAGAAGATTGCATGTGCAGTTGGAACAGGTCCAGTTGATGCAGCTTACAAGGCTGTTGATGATATAATACAGATCCCAACTGTTCTTCGAGAATATAGCATGACATCGGTCACAGAAGGCATTGATGCAATTGCAACTACTAGAGTGGTTGTCACTGGAGATGTTAGCGACTCTAAACATGCTTTGACTGGTCACTCCTTCAGCCGGGCATTCAGTGGGAGTGGTGCCGCACTGGATATTGTTGTTTCCAGTGTGCGAGCTTACCTGAGTGCCCTGAACAAGATGTCCAGTTTTGTTGGGGCTATCAAGGCTAGTAGTGAAGTATCTGAAAGCCAAAGAGTTCAAACCACAGAATGA
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| Protein seq | MASSLLSSPKPSSFSSANPTSTPRPRAQTLSPFRAAAPRFSHGLATAAAAANPSASRRCYHRAFARPVRASMAQPRRPEYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAEKLVVARQLARLGVDIIEAGFPASSPDDLDAVRSIAIEVGNTPVGEDGHVPVICGLSRCNKRDIDAAWEAVRHARRPRIHTFIATSEIHMQHKLRKTPEQVVAIAKEMVAYARSLGCPDVEFSPEDAGRSNREFLYHILEEVIKAGATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQNDLGLATANTLAGAHAGARQLEVTINGIGERAGNASLEEVVMAIKCRRELLGGLYTGINTQHITMSSKMVQEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDIGLTRANEFGIVLGKLSGRHAVRSKLVELGYEITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLSDEIFQPKVFWSLADVQATCGTLGLSTATVKLIGPDGEEKIACAVGTGPVDAAYKAVDDIIQIPTVLREYSMTSVTEGIDAIATTRVVVTGDVSDSKHALTGHSFSRAFSGSGAALDIVVSSVRAYLSALNKMSSFVGAIKASSEVSESQRVQTTE |
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| Function | 2-isopropylmalate synthase A [UniProtKB/Swiss-Prot:O04973] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g04670 | LOC_Os11g04670.1 | Chr11 | 1989201 | 1995087 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCTCCTCCCTCCTCTCCTCCCCAAAACCCTCCTCCTTCTCCTCCGCAAACCCCACCTCCACTCCACGCCCACGCGCCCAAACTCTCTCCCCCTTCCGCGCCGCCGCCCCACGCTTCTCCCATGGCCTCGCCACCGCCGCCGCCGCCGCAAACCCTAGCGCCTCCCGCCGCTGCTACCACCGCGCCTTCGCCCGCCCCGTCCGGGCGTCCATGGCGCAGCCGCGGCGCCCGGAGTACGTCCCCAACCGCATCGACGACCCCAACTACGTCCGCATCTTCGACACCACCCTCCGCGACGGGGAGCAGTCCCCCGGGGCCACCATGACCAGCGCCGAGAAGCTCGTCGTCGCGCGCCAGCTCGCCCGCCTCGGCGTCGACATCATCGAGGCCGGGTTCCCGGCCTCCTCCCCCGACGACCTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGGAACACGCCCGTCGGGGAGGACGGCCACGTGCCGGTCATCTGTGGCCTCTCGAGATGCAATAAGCGAGACATTGATGCTGCCTGGGAGGCCGTGCGGCACGCGCGGCGGCCGCGCATCCACACCTTCATTGCCACCAGCGAGATCCATATGCAGCACAAGCTAAGGAAGACGCCCGAGCAGGTGGTGGCCATTGCCAAGGAAATGGTGGCCTACGCCCGCAGCCTAGGCTGCCCTGATGTCGAGTTCAGCCCTGAAGACGCTGGCAGGTCAAACAGAGAGTTTCTATATCATATTCTAGAGGAAGTCATAAAAGCTGGAGCAACAACACTCAATATCCCAGACACTGTTGGATACACTCTTCCTTATGAATTTGGGAAGCTAATTGCTGATATAAAAGCAAACACTCCAGGAATTGAAAATGCTATTATTTCTACTCATTGCCAGAATGACCTTGGTCTAGCAACCGCCAATACATTAGCGGGCGCTCATGCAGGAGCACGGCAATTAGAGGTGACTATCAACGGTATTGGTGAAAGGGCTGGAAATGCTTCTTTGGAAGAGGTTGTGATGGCAATTAAATGTCGCCGAGAGCTCTTAGGAGGTCTGTATACTGGAATCAATACCCAACATATCACTATGTCAAGCAAAATGGTACAAGAGCACAGTGGACTTCATGTACAACCACATAAAGCTATTGTCGGTGCCAATGCCTTTGCACATGAAAGTGGAATTCATCAGGATGGGATGCTTAAATACAAAGGAACTTATGAAATAATTTCTCCTGATGATATTGGTCTAACACGTGCAAACGAGTTTGGTATTGTTCTTGGGAAACTCAGTGGAAGGCATGCTGTGAGATCTAAACTAGTGGAGCTTGGATATGAAATCACTGACAAGGAATTTGAGGATTTCTTTAAACGCTACAAAGAGGTTGCAGAGAAGAAAAAGCGTGTAACTGATGAAGACATTGAGGCGCTGTTGTCTGATGAGATATTTCAGCCCAAGGTTTTTTGGTCCCTTGCTGATGTACAGGCAACTTGTGGAACACTTGGTCTGTCTACAGCAACTGTCAAACTGATAGGTCCGGATGGAGAGGAGAAGATTGCATGTGCAGTTGGAACAGGTCCAGTTGATGCAGCTTACAAGGCTGTTGATGATATAATACAGATCCCAACTGTTCTTCGAGAATATAGCATGACATCGGTCACAGAAGGCATTGATGCAATTGCAACTACTAGAGTGGTTGTCACTGGAGATGTTAGCGACTCTAAACATGCTTTGACTGGTCACTCCTTCAGCCGGGCATTCAGTGGGAGTGGTGCCGCACTGGATATTGTTGTTTCCAGTGTGCGAGCTTACCTGAGTGCCCTGAACAAGATGTCCAGTTTTGTTGGGGCTATCAAGGCTAGTAGTGAAGTATCTGAAAGCCAAAGAGTTCAAACCACAGAATGA
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| Protein seq | MASSLLSSPKPSSFSSANPTSTPRPRAQTLSPFRAAAPRFSHGLATAAAAANPSASRRCYHRAFARPVRASMAQPRRPEYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAEKLVVARQLARLGVDIIEAGFPASSPDDLDAVRSIAIEVGNTPVGEDGHVPVICGLSRCNKRDIDAAWEAVRHARRPRIHTFIATSEIHMQHKLRKTPEQVVAIAKEMVAYARSLGCPDVEFSPEDAGRSNREFLYHILEEVIKAGATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQNDLGLATANTLAGAHAGARQLEVTINGIGERAGNASLEEVVMAIKCRRELLGGLYTGINTQHITMSSKMVQEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDIGLTRANEFGIVLGKLSGRHAVRSKLVELGYEITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLSDEIFQPKVFWSLADVQATCGTLGLSTATVKLIGPDGEEKIACAVGTGPVDAAYKAVDDIIQIPTVLREYSMTSVTEGIDAIATTRVVVTGDVSDSKHALTGHSFSRAFSGSGAALDIVVSSVRAYLSALNKMSSFVGAIKASSEVSESQRVQTTE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g04670 | LOC_Os11g04670.2 | Chr11 | 1989201 | 1995087 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCTCCTCCCTCCTCTCCTCCCCAAAACCCTCCTCCTTCTCCTCCGCAAACCCCACCTCCACTCCACGCCCACGCGCCCAAACTCTCTCCCCCTTCCGCGCCGCCGCCCCACGCTTCTCCCATGGCCTCGCCACCGCCGCCGCCGCCGCAAACCCTAGCGCCTCCCGCCGCTGCTACCACCGCGCCTTCGCCCGCCCCGTCCGGGCGTCCATGGCGCAGCCGCGGCGCCCGGAGTACGTCCCCAACCGCATCGACGACCCCAACTACGTCCGCATCTTCGACACCACCCTCCGCGACGGGGAGCAGTCCCCCGGGGCCACCATGACCAGCGCCGAGAAGCTCGTCGTCGCGCGCCAGCTCGCCCGCCTCGGCGTCGACATCATCGAGGCCGGGTTCCCGGCCTCCTCCCCCGACGACCTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGGAACACGCCCGTCGGGGAGGACGGCCACGTGCCGGTCATCTGTGGCCTCTCGAGATGCAATAAGCGAGACATTGATGCTGCCTGGGAGGCCGTGCGGCACGCGCGGCGGCCGCGCATCCACACCTTCATTGCCACCAGCGAGATCCATATGCAGCACAAGCTAAGGAAGACGCCCGAGCAGGTGGTGGCCATTGCCAAGGAAATGGTGGCCTACGCCCGCAGCCTAGGCTGCCCTGATGTCGAGTTCAGCCCTGAAGACGCTGGCAGGTCAAACAGAGAGTTTCTATATCATATTCTAGAGGAAGTCATAAAAGCTGGAGCAACAACACTCAATATCCCAGACACTGTTGGATACACTCTTCCTTATGAATTTGGGAAGCTAATTGCTGATATAAAAGCAAACACTCCAGGAATTGAAAATGCTATTATTTCTACTCATTGCCAGAATGACCTTGGTCTAGCAACCGCCAATACATTAGCGGGCGCTCATGCAGGAGCACGGCAATTAGAGGTGACTATCAACGGTATTGGTGAAAGGGCTGGAAATGCTTCTTTGGAAGAGGTTGTGATGGCAATTAAATGTCGCCGAGAGCTCTTAGGAGGTCTGTATACTGGAATCAATACCCAACATATCACTATGTCAAGCAAAATGGTACAAGAGCACAGTGGACTTCATGTACAACCACATAAAGCTATTGTCGGTGCCAATGCCTTTGCACATGAAAGTGGAATTCATCAGGATGGGATGCTTAAATACAAAGGAACTTATGAAATAATTTCTCCTGATGATATTGGTCTAACACGTGCAAACGAGTTTGGTATTGTTCTTGGGAAACTCAGTGGAAGGCATGCTGTGAGATCTAAACTAGTGGAGCTTGGATATGAAATCACTGACAAGGAATTTGAGGATTTCTTTAAACGCTACAAAGAGGTTGCAGAGAAGAAAAAGCGTGTAACTGATGAAGACATTGAGGCGCTGTTGTCTGATGAGATATTTCAGCCCAAGGTTTTTTGGTCCCTTGCTGATGTACAGGCAACTTGTGGAACACTTGGTCTGTCTACAGCAACTGTCAAACTGATAGGTCCGGATGGAGAGGAGAAGATTGCATGTGCAGTTGGAACAGGTCCAGTTGATGCAGCTTACAAGGCTGTTGATGATATAATACAGATCCCAACTGTTCTTCGAGAATATAGCATGACATCGGTCACAGAAGGCATTGATGCAATTGCAACTACTAGAGTGGTTGTCACTGGAGATGTTAGCGACTCTAAACATGCTTTGACTGGTCACTCCTTCAGCCGGGCATTCAGTGGTGCCGCACTGGATATTGTTGTTTCCAGTGTGCGAGCTTACCTGAGTGCCCTGAACAAGATGTCCAGTTTTGTTGGGGCTATCAAGGCTAGTAGTGAAGTATCTGAAAGCCAAAGAGTTCAAACCACAGAATGA
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| Protein seq | MASSLLSSPKPSSFSSANPTSTPRPRAQTLSPFRAAAPRFSHGLATAAAAANPSASRRCYHRAFARPVRASMAQPRRPEYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAEKLVVARQLARLGVDIIEAGFPASSPDDLDAVRSIAIEVGNTPVGEDGHVPVICGLSRCNKRDIDAAWEAVRHARRPRIHTFIATSEIHMQHKLRKTPEQVVAIAKEMVAYARSLGCPDVEFSPEDAGRSNREFLYHILEEVIKAGATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQNDLGLATANTLAGAHAGARQLEVTINGIGERAGNASLEEVVMAIKCRRELLGGLYTGINTQHITMSSKMVQEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDIGLTRANEFGIVLGKLSGRHAVRSKLVELGYEITDKEFEDFFKRYKEVAEKKKRVTDEDIEALLSDEIFQPKVFWSLADVQATCGTLGLSTATVKLIGPDGEEKIACAVGTGPVDAAYKAVDDIIQIPTVLREYSMTSVTEGIDAIATTRVVVTGDVSDSKHALTGHSFSRAFSGAALDIVVSSVRAYLSALNKMSSFVGAIKASSEVSESQRVQTTE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.097748 | 2.072535 | 2.110079 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0142500 | RBH | 3.135180 | 3.039738 | 8.658957 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04440 | RBH | 2.111126 | 2.431191 | 1.942740 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0142500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002800 | RBH | 1.610046 | 20.708248 | 5.471912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002860 | RBH | 0.300724 | 1.412208 | 4.763726 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002820 | RBH | 1.191569 | 10.610799 | 14.701798 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002780 | SBH | 0.085971 | 0.348018 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002800 | RBH | 17.289007 | 36.371254 | 26.642849 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0037400 | RBH | 4.1452955 | 12.186348 | 10.560202 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002860 | RBH | 0.697166 | 1.847386 | 2.106356 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0035100 | SBH | 6.3826755 | 55.468134 | 9.860917 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002750 | RBH | 0.235137 | 0.752053 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002880 | RBH | 0.795447 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002870 | SBH | 4.926410 | 11.458938 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002790 | RBH | 1.887353 | 0.0 | 1.648910 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002870 | RBH | 0.886007 | 10.159241 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002800 | SBH | 1.075840 | 7.269472 | 4.370488 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002800 | RBH | 2.782157 | 44.361359 | 12.152555 |
