Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g04560 | OGI:11006540 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:1931410-1932509 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGCTCTCGATTTCTAAAGACATCGCCATGATGAAGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCTCCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTTAGATCGGTAACGTTTTTTTCCTTTACTAGCTGATTTGCCCGTGCATTGCAATAGAATCAAAGGACAGATTGAGGATTGGGAATTGAAAGCGAGTACACAAGTTTCACCGATGTTGAGAGGCACACACGTCAATGATACGGAGTGATGGTAGCTTAGTTCATTCACAACCCAAGACACTAAACATAGTTTATATAAACTCCACATCATCACACTACTCTTCTAAGGCCATTCCCAACCCAAAACACTAGACATAGTTTCCATAAACTCCACATCATCAAGAAACTAGTACTAGACACCACTCTTCCAATGCAAACACC
More
|
||||||||||
| CDS seq | ATGATGAAGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCTCCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGA
More
|
||||||||||
| Protein seq | MMKLAHLFGSSSSSSSSSSKKRRKKRRSGAKSCSFGSTTSSSSSSLAASSSDDSAATTPRSVLPASAAASSSGTKKPAAVAVTREDLEVALRRIVSSKEELAAMLAEAECAGELVLEEIAAAAADEGELKETFAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMMYGCA |
||||||||||
| Function | Probable calcium-binding protein CML36 [UniProtKB/Swiss-Prot:Q9SS31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g04560 | LOC_Os11g04560.1 | Chr11 | 1931410 | 1932509 | + | MSU_osa1r7 | ||
| CDS seq | ATGATGAAGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCTCCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGA
More
|
|||||||
| Protein seq | MMKLAHLFGSSSSSSSSSSKKRRKKRRSGAKSCSFGSTTSSSSSSLAASSSDDSAATTPRSVLPASAAASSSGTKKPAAVAVTREDLEVALRRIVSSKEELAAMLAEAECAGELVLEEIAAAAADEGELKETFAVFDADGDGRISAEELRAVLASLGDELCSVDDCRRMIGGVDTDGDGFVCFDEFARMMMYGCA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.306179 | 0.139642 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0141400 | RBH | 0.0 | 0.617598 | 0.805285 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04360 | RBH | 0.203900 | 1.053109 | 0.192248 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0141400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002750 | RBH | 0.0 | 15.020177 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002810 | RBH | 0.0 | 1.376961 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002770 | RBH | 1.078478 | 6.871895 | 0.791615 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002730 | RBH | 0.0 | 0.213204 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002740 | RBH | 0.0 | 17.265480 | 3.363564 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0036800 | RBH | 0.975332 | 21.07751 | 4.0303235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002800 | RBH | 0.116573 | 0.193250 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0035200 | RBH | 1.3031 | 35.153618 | 2.984917 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002690 | RBH | 0.0 | 0.456637 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002810 | RBH | 0.0 | 22.698776 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002730 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002810 | RBH | 0.0 | 1.748635 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002740 | RBH | 0.0 | 6.660892 | 0.591405 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002740 | RBH | 0.0 | 14.288132 | 3.726357 |
