Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g04040 | OGI:11005600 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:1634651-1636916 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGTTCAAAACAGTCAGTGAGATAACCTCCCTTATCCCTGATGAAGAGTGTCTATGACGATCTTCAATAGCAGTGGCTGTTCCATGTTCTCCTTCCTCCTCGTTCTTATATGTTTTTCACTGATTTGATTATTAAGTACACCATTGCAAGCTAGTCTGGTGATTATTACACCAACAAGCAGCAGCTAGCTAGGAGAGTTCTCCTTATCTTTCTCTTCTCTCTTTGTCAGTAGTAGATCCCAGTGTTAGTCTAGCTACGAAACAAAACAATCAGTTTGCTCACTGTTTTTTTTTTCTTTTTGAAAGTTAGTTCAATCACTGTTTCACTATCAACTACAAACGACTACTCACTTGTAAAGGTAGATGGCTTTCGACCAATCTCCCTTCAAAACTGCTCAGTAAAAATTCTTTCAAAGGTTTTGGCAAATAGGCTTCAAAAAGTTCTGACAAGAATGATTCATCTGGACCAGACAGGCTTCCTTAAAGGTAGATGCATCTCTGAAAATTTAATTTATGCCACTGAACTGATACAAGCGTGCCATGCAAGGAAATGCAAGACCCTCATTATCAAGCTAGATTTTGCTAAAGCTTTCGATTCAGTTCTCTGGACGAGCCTGTTCCAAATCTTGGCTGTCCGGGGGTTTCCAAACAATTGGATTTCTTGGATCAAAAGCCTACTTCAAACATCAAAGTCGGCAGTGCTTCTTAATGGAATTCCAGGAAAATGGATTAACTGCAAAAAAGGGCTTCGCCAGGGAGACCCCTTATCTCCTTATTTATTTATTCTAGTGGCAGATGTGCTGCAACGACTGCTGGAGAAAAACTTTCAGATTCGGCACCCTATCTATCAGGACAGACCATGTGCGACCATTCAGTACGCCGATGACACGCTGGTGATATGCCGAGCAGAGGAGGATGATGTTCTTGCTCTTAGATCAACCTTGCTGCAATTCTCCAAAGCCACAGGATTACAAATCAACTTTGCCAAAAGTACAATGATCTCCCTTCATATCGACCGTTCAAAGGAATCGTCATTGTCGGAATTGCTACAGTGCAAGCTGGAATCGCTTCCAATGTCTTACTTGGGCCTACCTCTATCCTTGCATAAACTCACCAACAATGATCTACAACCAATTGTGGTCAAAGTGGATAGTTTTCTTACAGGCTGGGAGGCATCTCTACTTTCACAGGCCGAACGCCTAATCCTAGTTAATGCAGTGCTAAGCAGTGTTCCAGTTTATGCAATGTCCGCGTTCAAACTCCCACCAAAGGTAATAGAAGCAATTGATAAACGGCGACGAGCCTTTTTTTGGACCGGTGATGACACCTGCTCCGGAGCAAAGTGTTTAGTGGCCTGGGATGAGGTTTGTACCGCAAAAGAAAAGGGAGGACTAGGAATCAAAAGTTTAAAGACTCAAAATGAAGCTCTTCTTCTCAAAAGACTTTTCAACCTTTTCTCAGGCAATTCCTCCTGGACTAATTGGATTTGGAAAGAATTTGATGGAAGATCACTATTAAAATCTCTACCGTTAGGTCAACACTGGAGTGTCTTTCAGAAACTGCTGCCAGAGCTTTTCAAGATAACTACGGTGCACATTGGGGACGGCTCGAGAACATCCTTTTGGCATGATCGCTGGACTGGCAATATGACTCTTGCAGCACAGTTTGAATCTCTCTTCTCGCATTCAACTGACGACTTAGCCACTGTTGAGCAAATTTTATCCTTCGGAATTTACGATATTCTCACCCCTAGGCTTTCATCTGCAGCGCAAAACGACCTACAAGAACTGCAAACCATTCTTCAGAATTTTTCCTTGACAAATGAATCGGATACTCGGCTCAACAATCGCCTTGGCAATTTAACAACCAAGACAATCTATGATTTAAGGTCTCCGCCTGGCTTTCCTTCACCAAATTGGAAATTCATTTGGGACTGCAGAACGCCATTAAAGATCAAGCTCTTTGCTTGGCTTCTAGTCAGAGATCGACTGTCCACAAAATTGAATCTCTTGAAAAAGAAAATAGTACAGACAGCAACCTGTGACATATGCAGCACCACTGATGAAACAGCAGATCACCTCAGCTTCAGCTGCCCTTTTGCTATCAGTTTCTGGCAAGCACTTCATATCCAACCGATCATCAATGAGACTAAGTACCTGTCCCAACTAAAGGCACCAGCAACTATCCCAACAAGACATTTTCAGAGTTTCTTCATGCTCTGCTTTTGGGTCCTGTGGAACCACAGGCATGATGTTGTATTCTGA
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| CDS seq | ATGCCGTTCAAAACAGTCATTAGTTCAATCACTGTTTCACTATCAACTACAAACGACTACTCACTTGTAAAGGTAGATGGCTTTCGACCAATCTCCCTTCAAAACTGCTCAGTAAAAATTCTTTCAAAGGTTTTGGCAAATAGGCTTCAAAAAGTTCTGACAAGAATGATTCATCTGGACCAGACAGGCTTCCTTAAAGGTAGATGCATCTCTGAAAATTTAATTTATGCCACTGAACTGATACAAGCGTGCCATGCAAGGAAATGCAAGACCCTCATTATCAAGCTAGATTTTGCTAAAGCTTTCGATTCAGTTCTCTGGACGAGCCTGTTCCAAATCTTGGCTGTCCGGGGGTTTCCAAACAATTGGATTTCTTGGATCAAAAGCCTACTTCAAACATCAAAGTCGGCAGTGCTTCTTAATGGAATTCCAGGAAAATGGATTAACTGCAAAAAAGGGCTTCGCCAGGGAGACCCCTTATCTCCTTATTTATTTATTCTAGTGGCAGATGTGCTGCAACGACTGCTGGAGAAAAACTTTCAGATTCGGCACCCTATCTATCAGGACAGACCATGTGCGACCATTCAGTACGCCGATGACACGCTGGTGATATGCCGAGCAGAGGAGGATGATGTTCTTGCTCTTAGATCAACCTTGCTGCAATTCTCCAAAGCCACAGGATTACAAATCAACTTTGCCAAAAGTACAATGATCTCCCTTCATATCGACCGTTCAAAGGAATCGTCATTGTCGGAATTGCTACAGTGCAAGCTGGAATCGCTTCCAATGTCTTACTTGGGCCTACCTCTATCCTTGCATAAACTCACCAACAATGATCTACAACCAATTGTGGTCAAAGTGGATAGTTTTCTTACAGGCTGGGAGGCATCTCTACTTTCACAGGCCGAACGCCTAATCCTAGTTAATGCAGTGCTAAGCAGTGTTCCAGTTTATGCAATGTCCGCGTTCAAACTCCCACCAAAGGTAATAGAAGCAATTGATAAACGGCGACGAGCCTTTTTTTGGACCGGTGATGACACCTGCTCCGGAGCAAAGTGTTTAGTGGCCTGGGATGAGGTTTGTACCGCAAAAGAAAAGGGAGGACTAGGAATCAAAAGTTTAAAGACTCAAAATGAAGCTCTTCTTCTCAAAAGACTTTTCAACCTTTTCTCAGGCAATTCCTCCTGGACTAATTGGATTTGGAAAGAATTTGATGGAAGATCACTATTAAAATCTCTACCGTTAGGTCAACACTGGAGTGTCTTTCAGAAACTGCTGCCAGAGCTTTTCAAGATAACTACGGTGCACATTGGGGACGGCTCGAGAACATCCTTTTGGCATGATCGCTGGACTGGCAATATGACTCTTGCAGCACAGTTTGAATCTCTCTTCTCGCATTCAACTGACGACTTAGCCACTGTTGAGCAAATTTTATCCTTCGGAATTTACGATATTCTCACCCCTAGGCTTTCATCTGCAGCGCAAAACGACCTACAAGAACTGCAAACCATTCTTCAGAATTTTTCCTTGACAAATGAATCGGATACTCGGCTCAACAATCGCCTTGGCAATTTAACAACCAAGACAATCTATGATTTAAGGTCTCCGCCTGGCTTTCCTTCACCAAATTGGAAATTCATTTGGGACTGCAGAACGCCATTAAAGATCAAGCTCTTTGCTTGGCTTCTAGTCAGAGATCGACTGTCCACAAAATTGAATCTCTTGAAAAAGAAAATAGTACAGACAGCAACCTGTGACATATGCAGCACCACTGATGAAACAGCAGATCACCTCAGCTTCAGCTGCCCTTTTGCTATCAGTTTCTGGCAAGCACTTCATATCCAACCGATCATCAATGAGACTAAGTACCTGTCCCAACTAAAGGCACCAGCAACTATCCCAACAAGACATTTTCAGAGTTTCTTCATGCTCTGCTTTTGGGTCCTGTGGAACCACAGGCATGATGTTGTATTCTGA
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| Protein seq | MPFKTVISSITVSLSTTNDYSLVKVDGFRPISLQNCSVKILSKVLANRLQKVLTRMIHLDQTGFLKGRCISENLIYATELIQACHARKCKTLIIKLDFAKAFDSVLWTSLFQILAVRGFPNNWISWIKSLLQTSKSAVLLNGIPGKWINCKKGLRQGDPLSPYLFILVADVLQRLLEKNFQIRHPIYQDRPCATIQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHIDRSKESSLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILVNAVLSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCLVAWDEVCTAKEKGGLGIKSLKTQNEALLLKRLFNLFSGNSSWTNWIWKEFDGRSLLKSLPLGQHWSVFQKLLPELFKITTVHIGDGSRTSFWHDRWTGNMTLAAQFESLFSHSTDDLATVEQILSFGIYDILTPRLSSAAQNDLQELQTILQNFSLTNESDTRLNNRLGNLTTKTIYDLRSPPGFPSPNWKFIWDCRTPLKIKLFAWLLVRDRLSTKLNLLKKKIVQTATCDICSTTDETADHLSFSCPFAISFWQALHIQPIINETKYLSQLKAPATIPTRHFQSFFMLCFWVLWNHRHDVVF |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g04040 | LOC_Os11g04040.1 | Chr11 | 1634651 | 1636916 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGTTCAAAACAGTCATTAGTTCAATCACTGTTTCACTATCAACTACAAACGACTACTCACTTGTAAAGGTAGATGGCTTTCGACCAATCTCCCTTCAAAACTGCTCAGTAAAAATTCTTTCAAAGGTTTTGGCAAATAGGCTTCAAAAAGTTCTGACAAGAATGATTCATCTGGACCAGACAGGCTTCCTTAAAGGTAGATGCATCTCTGAAAATTTAATTTATGCCACTGAACTGATACAAGCGTGCCATGCAAGGAAATGCAAGACCCTCATTATCAAGCTAGATTTTGCTAAAGCTTTCGATTCAGTTCTCTGGACGAGCCTGTTCCAAATCTTGGCTGTCCGGGGGTTTCCAAACAATTGGATTTCTTGGATCAAAAGCCTACTTCAAACATCAAAGTCGGCAGTGCTTCTTAATGGAATTCCAGGAAAATGGATTAACTGCAAAAAAGGGCTTCGCCAGGGAGACCCCTTATCTCCTTATTTATTTATTCTAGTGGCAGATGTGCTGCAACGACTGCTGGAGAAAAACTTTCAGATTCGGCACCCTATCTATCAGGACAGACCATGTGCGACCATTCAGTACGCCGATGACACGCTGGTGATATGCCGAGCAGAGGAGGATGATGTTCTTGCTCTTAGATCAACCTTGCTGCAATTCTCCAAAGCCACAGGATTACAAATCAACTTTGCCAAAAGTACAATGATCTCCCTTCATATCGACCGTTCAAAGGAATCGTCATTGTCGGAATTGCTACAGTGCAAGCTGGAATCGCTTCCAATGTCTTACTTGGGCCTACCTCTATCCTTGCATAAACTCACCAACAATGATCTACAACCAATTGTGGTCAAAGTGGATAGTTTTCTTACAGGCTGGGAGGCATCTCTACTTTCACAGGCCGAACGCCTAATCCTAGTTAATGCAGTGCTAAGCAGTGTTCCAGTTTATGCAATGTCCGCGTTCAAACTCCCACCAAAGGTAATAGAAGCAATTGATAAACGGCGACGAGCCTTTTTTTGGACCGGTGATGACACCTGCTCCGGAGCAAAGTGTTTAGTGGCCTGGGATGAGGTTTGTACCGCAAAAGAAAAGGGAGGACTAGGAATCAAAAGTTTAAAGACTCAAAATGAAGCTCTTCTTCTCAAAAGACTTTTCAACCTTTTCTCAGGCAATTCCTCCTGGACTAATTGGATTTGGAAAGAATTTGATGGAAGATCACTATTAAAATCTCTACCGTTAGGTCAACACTGGAGTGTCTTTCAGAAACTGCTGCCAGAGCTTTTCAAGATAACTACGGTGCACATTGGGGACGGCTCGAGAACATCCTTTTGGCATGATCGCTGGACTGGCAATATGACTCTTGCAGCACAGTTTGAATCTCTCTTCTCGCATTCAACTGACGACTTAGCCACTGTTGAGCAAATTTTATCCTTCGGAATTTACGATATTCTCACCCCTAGGCTTTCATCTGCAGCGCAAAACGACCTACAAGAACTGCAAACCATTCTTCAGAATTTTTCCTTGACAAATGAATCGGATACTCGGCTCAACAATCGCCTTGGCAATTTAACAACCAAGACAATCTATGATTTAAGGTCTCCGCCTGGCTTTCCTTCACCAAATTGGAAATTCATTTGGGACTGCAGAACGCCATTAAAGATCAAGCTCTTTGCTTGGCTTCTAGTCAGAGATCGACTGTCCACAAAATTGAATCTCTTGAAAAAGAAAATAGTACAGACAGCAACCTGTGACATATGCAGCACCACTGATGAAACAGCAGATCACCTCAGCTTCAGCTGCCCTTTTGCTATCAGTTTCTGGCAAGCACTTCATATCCAACCGATCATCAATGAGACTAAGTACCTGTCCCAACTAAAGGCACCAGCAACTATCCCAACAAGACATTTTCAGAGTTTCTTCATGCTCTGCTTTTGGGTCCTGTGGAACCACAGGCATGATGTTGTATTCTGA
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| Protein seq | MPFKTVISSITVSLSTTNDYSLVKVDGFRPISLQNCSVKILSKVLANRLQKVLTRMIHLDQTGFLKGRCISENLIYATELIQACHARKCKTLIIKLDFAKAFDSVLWTSLFQILAVRGFPNNWISWIKSLLQTSKSAVLLNGIPGKWINCKKGLRQGDPLSPYLFILVADVLQRLLEKNFQIRHPIYQDRPCATIQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHIDRSKESSLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILVNAVLSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCLVAWDEVCTAKEKGGLGIKSLKTQNEALLLKRLFNLFSGNSSWTNWIWKEFDGRSLLKSLPLGQHWSVFQKLLPELFKITTVHIGDGSRTSFWHDRWTGNMTLAAQFESLFSHSTDDLATVEQILSFGIYDILTPRLSSAAQNDLQELQTILQNFSLTNESDTRLNNRLGNLTTKTIYDLRSPPGFPSPNWKFIWDCRTPLKIKLFAWLLVRDRLSTKLNLLKKKIVQTATCDICSTTDETADHLSFSCPFAISFWQALHIQPIINETKYLSQLKAPATIPTRHFQSFFMLCFWVLWNHRHDVVF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005000 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001630 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001650 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004890 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004790 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0062100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004870 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0020400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004820 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004920 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004920 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001570 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004900 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004950 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
