Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g40830 | OGI:10066530 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:21955040-21957289 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTTTCCCTATACGGCTATACCATGTCGATGCCTGGTGATGCCCAACCTGAAGGTTCTCACCAATCCGCTTCCTCCGCAAAACCTGCCTTGTCATCGTGCCGGAGGAATAAATCTGAGAACACGTCATTTGTCTCAGATTTGAGAGATCACATCCAGGAGTTTATCCATGCTTCCCCGAATGAGCACAGGACCTGTTTTACCAAGACTATCAAGAGAATGTTTGGCATGTCAAAGGTCGTTGCAGAGAGATCCACCGAAGCAAAGGAACCTGGAGCTGAAAGTGTTTTGCCACTTCAGACCACGGTGTCGCGGTAGACTGTGATCAGTAATATAATTTTCTCTGTAGAAAGTAATCTGTCGCTGAGGATGATCTTAGGATAGAGAAGTCATAGTTACACTTGATACCAGTAGATCATGTACAGTAACTGGAGGATATTCTGTATTAATTTGACTGCTAAAAGGCCTATATATATTGTAAGAAGAGAAACTGAGAAGCAGTTCTTTGAATTATCTACACCCAATTGTGCTATCACACTAGAAGAGACATTTCCTCTTCTATGGAATCACGCTGCACAGCATAACACTTTTTTTTTCTTTCTAATCCAATCAAATCTTTTTGTTGCCTATAAAAACATGTCTATCATCTACAATTGCGTCACAAGTATGACCAAGACTGTACAAAGCAGCCTAGCTGATCCAGCAAGCAAGCGCCGCGGCGACGAGCTGGACGTGCCCTGCTCGGAGAGCGAGCTGAGGCTGAACTGTGGGTTGGAGCCGTACAACGCCTGCACGCCCTCGACGTCGTCCACGGTGAGGCGCACCTTCTTCTCCCGCGGCTTGATGCTCGGGTACATGACGGCGCGCGGCGACGCCGAGTGGCCGAGCCCCAGGACATGGCCGATCTCGTGCGTCGCCACGGACTCCAGGTCGATGGCCGACGCCGTCGCGTCGACGTCGAAGTCCACCGCCCAGTGCTCCGACGCGTCGAGGTGGAGCCGCCCGTTCTTTGGGGAGAAGGCGTGGCCGAGGATGCCGAGCGGCCCGTCGAACGGCACGCCGTCGCCGTGGTTGCCGGCGTAGAAGCCCACCTTGATGTCGGCCGCCTCGTAGTCGTCCGTCTCGACGAAGCCCACGGGGATCGTCCGCGCCCACCGCGCGAACGCGCGCTGGAACACGGCACGCACGGCGGCCGGCGGCAGGTAGCCGACGGTGGCCGTCGGCGAGACGGCGTAGGACAGCACGATCGGCGGGTCCGACCGCGTCCATCGCGGCTCGCCCTTGAAGAACGTGAACCGGCTGACCACGCCGCCCTGCGCCCCCGGCGAGAGCGCGACGGACACGGGGCGCTCCACATCGTCATCCCCGACGCCGCAGCGCGGCGACATGATCTGATCGAGCGTGGCGTTGTCGAGCCGGCCGGTGACCGGCAGGCTGAACCTCGTCTGGTACCTCCTCACGGCGACCTCGAGGTGCTCGTCGAAGGCGTCCGTCGTGTCACGCCCCGGCTTCGCCATGTACCCGAACCTCGCCAGGTACCGCTTCAGCTCCGCGAGCCCCGTGACATGGCTCCCTCGCCCCGCGTCGAGCAGCTGCTTGAACGAGTGCCACGCCACGCCGCCGTGCCCGTGCACCACGGGGAGCCCGAGCACCACCACCATCGCCACGGCGGCGACCAGGCACGACGCGGCAGCCGCGCGGCGACATAGGAACATGAGAGCGCGCGCGGCGTGGCGTGGCGAGGGCGAGGCGGCCGGTGTGGCCGTTATTCTCGTTATCGTGGGGGCTCGCGGGGGAGGCAGTGGTGGACGAAGAATTTTATGTGCACACGAGAGTACGAGACGAGAGACAGAAAAAGCTGTGGATAGGGAGAAGTGGGTCAGCCGATGGAGCTCCGGTTGGCCACCGGCTGACCTCGTCGTCTTCCTCCTCCTCGCGGCGGAGGAGAGACGGTCTTCCTCACGTAATCCACTGGTTAAGAATTCAATCTCCTCAACGACGACCAACTGTCGCCGGTCATCGTCGTGACGCGAAAATACCTAACTCCACTCTCTAATCTAATCTATGTACTCCTACTTAACTTGGTTTCGATTTGGGGATAAAAATCCTAATTGGCTCATCACGAAAAAGAAAGAGGATAGGCGCTAATTGGAACCGATCATAAAACAGCAAAACAACAAGCTGCCGTGTGGCGGTAAGGGGTTTGCTTGACCTGAAGATGGCAGGAATCGCAGGGAGAGTATCAGGTTCAA
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| CDS seq | ATGTTCCTATGTCGCCGCGCGGCTGCCGCGTCGTGCCTGGTCGCCGCCGTGGCGATGGTGGTGGTGCTCGGGCTCCCCGTGGTGCACGGGCACGGCGGCGTGGCGTGGCACTCGTTCAAGCAGCTGCTCGACGCGGGGCGAGGGAGCCATGTCACGGGGCTCGCGGAGCTGAAGCGGTACCTGGCGAGGTTCGGGTACATGGCGAAGCCGGGGCGTGACACGACGGACGCCTTCGACGAGCACCTCGAGGTCGCCGTGAGGAGGTACCAGACGAGGTTCAGCCTGCCGGTCACCGGCCGGCTCGACAACGCCACGCTCGATCAGATCATGTCGCCGCGCTGCGGCGTCGGGGATGACGATGTGGAGCGCCCCGTGTCCGTCGCGCTCTCGCCGGGGGCGCAGGGCGGCGTGGTCAGCCGGTTCACGTTCTTCAAGGGCGAGCCGCGATGGACGCGGTCGGACCCGCCGATCGTGCTGTCCTACGCCGTCTCGCCGACGGCCACCGTCGGCTACCTGCCGCCGGCCGCCGTGCGTGCCGTGTTCCAGCGCGCGTTCGCGCGGTGGGCGCGGACGATCCCCGTGGGCTTCGTCGAGACGGACGACTACGAGGCGGCCGACATCAAGGTGGGCTTCTACGCCGGCAACCACGGCGACGGCGTGCCGTTCGACGGGCCGCTCGGCATCCTCGGCCACGCCTTCTCCCCAAAGAACGGGCGGCTCCACCTCGACGCGTCGGAGCACTGGGCGGTGGACTTCGACGTCGACGCGACGGCGTCGGCCATCGACCTGGAGTCCGTGGCGACGCACGAGATCGGCCATGTCCTGGGGCTCGGCCACTCGGCGTCGCCGCGCGCCGTCATGTACCCGAGCATCAAGCCGCGGGAGAAGAAGGTGCGCCTCACCGTGGACGACGTCGAGGGCGTGCAGGCGTTGTACGGCTCCAACCCACAGTTCAGCCTCAGCTCGCTCTCCGAGCAGGGCACGTCCAGCTCGTCGCCGCGGCGCTTGCTTGCTGGATCAGCTAGGCTGCTTTGTACAGTCTTGGTCATACTTGTGACGCAATTGTAG
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| Protein seq | MFLCRRAAAASCLVAAVAMVVVLGLPVVHGHGGVAWHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPAAVRAVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFDVDATASAIDLESVATHEIGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALYGSNPQFSLSSLSEQGTSSSSPRRLLAGSARLLCTVLVILVTQL |
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| Function | Metalloendoproteinase 1-MMP [UniProtKB/Swiss-Prot:O23507] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g40830 | LOC_Os10g40830.1 | Chr10 | 21955040 | 21957289 | - | MSU_osa1r7 | ||
| CDS seq | ATGTTCCTATGTCGCCGCGCGGCTGCCGCGTCGTGCCTGGTCGCCGCCGTGGCGATGGTGGTGGTGCTCGGGCTCCCCGTGGTGCACGGGCACGGCGGCGTGGCGTGGCACTCGTTCAAGCAGCTGCTCGACGCGGGGCGAGGGAGCCATGTCACGGGGCTCGCGGAGCTGAAGCGGTACCTGGCGAGGTTCGGGTACATGGCGAAGCCGGGGCGTGACACGACGGACGCCTTCGACGAGCACCTCGAGGTCGCCGTGAGGAGGTACCAGACGAGGTTCAGCCTGCCGGTCACCGGCCGGCTCGACAACGCCACGCTCGATCAGATCATGTCGCCGCGCTGCGGCGTCGGGGATGACGATGTGGAGCGCCCCGTGTCCGTCGCGCTCTCGCCGGGGGCGCAGGGCGGCGTGGTCAGCCGGTTCACGTTCTTCAAGGGCGAGCCGCGATGGACGCGGTCGGACCCGCCGATCGTGCTGTCCTACGCCGTCTCGCCGACGGCCACCGTCGGCTACCTGCCGCCGGCCGCCGTGCGTGCCGTGTTCCAGCGCGCGTTCGCGCGGTGGGCGCGGACGATCCCCGTGGGCTTCGTCGAGACGGACGACTACGAGGCGGCCGACATCAAGGTGGGCTTCTACGCCGGCAACCACGGCGACGGCGTGCCGTTCGACGGGCCGCTCGGCATCCTCGGCCACGCCTTCTCCCCAAAGAACGGGCGGCTCCACCTCGACGCGTCGGAGCACTGGGCGGTGGACTTCGACGTCGACGCGACGGCGTCGGCCATCGACCTGGAGTCCGTGGCGACGCACGAGATCGGCCATGTCCTGGGGCTCGGCCACTCGGCGTCGCCGCGCGCCGTCATGTACCCGAGCATCAAGCCGCGGGAGAAGAAGGTGCGCCTCACCGTGGACGACGTCGAGGGCGTGCAGGCGTTGTACGGCTCCAACCCACAGTTCAGCCTCAGCTCGCTCTCCGAGCAGGGCACGTCCAGCTCGTCGCCGCGGCGCTTGCTTGCTGGATCAGCTAGGCTGCTTTGTACAGTCTTGGTCATACTTGTGACGCAATTGTAG
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| Protein seq | MFLCRRAAAASCLVAAVAMVVVLGLPVVHGHGGVAWHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPAAVRAVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFDVDATASAIDLESVATHEIGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALYGSNPQFSLSSLSEQGTSSSSPRRLLAGSARLLCTVLVILVTQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.728201 | 1.256235 | 0.409165 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0557900 | RBH | 0.528700 | 2.049386 | 0.744037 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0557900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0019750 | RBH | 0.756149 | 1.779076 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0019870 | RBH | 0.137350 | 1.731162 | 0.350346 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0019520 | RBH | 2.979888 | 3.178134 | 0.021878 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0020070 | RBH | 0.289377 | 0.009100 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0019770 | RBH | 5.282520 | 1.234127 | 0.602181 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0361400 | RBH | 13.4391795 | 10.712798 | 0.102627 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0019610 | RBH | 0.441965 | 0.360174 | 0.046125 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0387600 | RBH | 14.0459055 | 14.6534695 | 0.1832825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0019380 | RBH | 0.097303 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0019310 | RBH | 1.243181 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0019820 | RBH | 9.749762 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0019400 | RBH | 1.052240 | 0.0 | 0.374146 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0019890 | RBH | 1.258596 | 1.077088 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G019720 | RBH | 0.491644 | 0.748047 | 0.299426 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0019790 | RBH | 4.834599 | 0.000000 | 1.110990 |
