Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g39210 | OGI:10063870 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:20935118-20935789 | ||||||||
| Gene Symbol | HIPP40, OsHMP44, HMP44, OsHIPP40, OsaHIP40, HIP40 | ||||||||||
| DNA seq | ATGGCGGACATTGTCTCCGACGTGTTCCTGTCCTTCTTCTGCTGCTGCTACTACCCTCCCGGCGGCCACCGCGGCGTCGGCGCGCACAACGACACCGCCTTGCGCCGCCGCCGTGGCGGCGCCGGCCGAAGCAGCAGCAGGCCGCCCGTGTCGCTCCAGACGGTGGAGCTCAAGGTGCGGATGTGCTGCGAAGGCTGCGAGCGCGTCGTCCGGAGCGCCCTCGCCAACCTCCGAGGTGAGCTATAGCGTGCAACCGCGTCATCGTTTTGGACAATGACACGGTCTTATCGTTTTCAACAACGACATGGTCTCGAGCTTTTTGGTGGTGGTACGTGTTGTTTTTTTTAAGGGGTGGATAGCGTGGAGGTGGACGTGGCGATGGAGAAGGTGAGGGTGACGGGGTACGTGGACCGAGGGAGGGTGCTGCGCGAGGTGCGGCGGAGCGGGAAGAAGGCGGAGTTTTGGCCCAGCGGCGGCACGCCGCGGCGGTTCACGTCGGAGAAGGAGTACTTCCGCGACGGCGAGGCGTACAGGGGCAGCTACAACTACCACCGCCGTGGCTACGGCGACGGCGACCGCCACGGCTGGATGCGAGAGCCCGCCCGCGGCGCCGACGCCGTCAGCAACATGTTCAACGACGACGACGTCTCCGCCGCCTGCGCCATCATGTAG
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| CDS seq | ATGGCGGACATTGTCTCCGACGTGTTCCTGTCCTTCTTCTGCTGCTGCTACTACCCTCCCGGCGGCCACCGCGGCGTCGGCGCGCACAACGACACCGCCTTGCGCCGCCGCCGTGGCGGCGCCGGCCGAAGCAGCAGCAGGCCGCCCGTGTCGCTCCAGACGGTGGAGCTCAAGGTGCGGATGTGCTGCGAAGGCTGCGAGCGCGTCGTCCGGAGCGCCCTCGCCAACCTCCGAGGGGTGGATAGCGTGGAGGTGGACGTGGCGATGGAGAAGGTGAGGGTGACGGGGTACGTGGACCGAGGGAGGGTGCTGCGCGAGGTGCGGCGGAGCGGGAAGAAGGCGGAGTTTTGGCCCAGCGGCGGCACGCCGCGGCGGTTCACGTCGGAGAAGGAGTACTTCCGCGACGGCGAGGCGTACAGGGGCAGCTACAACTACCACCGCCGTGGCTACGGCGACGGCGACCGCCACGGCTGGATGCGAGAGCCCGCCCGCGGCGCCGACGCCGTCAGCAACATGTTCAACGACGACGACGTCTCCGCCGCCTGCGCCATCATGTAG
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| Protein seq | MADIVSDVFLSFFCCCYYPPGGHRGVGAHNDTALRRRRGGAGRSSSRPPVSLQTVELKVRMCCEGCERVVRSALANLRGVDSVEVDVAMEKVRVTGYVDRGRVLREVRRSGKKAEFWPSGGTPRRFTSEKEYFRDGEAYRGSYNYHRRGYGDGDRHGWMREPARGADAVSNMFNDDDVSAACAIM |
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| Function | Heavy metal-associated isoprenylated plant protein 30 [UniProtKB/Swiss-Prot:F4IQG4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g39210 | LOC_Os10g39210.1 | Chr10 | 20935118 | 20935789 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGACATTGTCTCCGACGTGTTCCTGTCCTTCTTCTGCTGCTGCTACTACCCTCCCGGCGGCCACCGCGGCGTCGGCGCGCACAACGACACCGCCTTGCGCCGCCGCCGTGGCGGCGCCGGCCGAAGCAGCAGCAGGCCGCCCGTGTCGCTCCAGACGGTGGAGCTCAAGGTGCGGATGTGCTGCGAAGGCTGCGAGCGCGTCGTCCGGAGCGCCCTCGCCAACCTCCGAGGGGTGGATAGCGTGGAGGTGGACGTGGCGATGGAGAAGGTGAGGGTGACGGGGTACGTGGACCGAGGGAGGGTGCTGCGCGAGGTGCGGCGGAGCGGGAAGAAGGCGGAGTTTTGGCCCAGCGGCGGCACGCCGCGGCGGTTCACGTCGGAGAAGGAGTACTTCCGCGACGGCGAGGCGTACAGGGGCAGCTACAACTACCACCGCCGTGGCTACGGCGACGGCGACCGCCACGGCTGGATGCGAGAGCCCGCCCGCGGCGCCGACGCCGTCAGCAACATGTTCAACGACGACGACGTCTCCGCCGCCTGCGCCATCATGTAG
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| Protein seq | MADIVSDVFLSFFCCCYYPPGGHRGVGAHNDTALRRRRGGAGRSSSRPPVSLQTVELKVRMCCEGCERVVRSALANLRGVDSVEVDVAMEKVRVTGYVDRGRVLREVRRSGKKAEFWPSGGTPRRFTSEKEYFRDGEAYRGSYNYHRRGYGDGDRHGWMREPARGADAVSNMFNDDDVSAACAIM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0537400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02860 | RBH | 0.760422 | 0.128910 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0537400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018160 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018710 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0345500 | RBH | 0.2019915 | 0.450446 | 0.606867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018340 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0370300 | RBH | 0.196233 | 0.575556 | 0.539045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018570 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018660 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018440 | RBH | 0.0 | 0.0 | 0.0 |
