Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g38800 | OGI:10063270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:20652205-20654875 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATGGCTCTTGCATTTGCATCTATGACCCGTACATTCTGCACATGGATAAGCCTAAAACAACGTCCCCTATTACAGTGACAAATCTGAACAAAATGATAATGACACGTGACAAAGGGACTGTGAAATCGAGGTGACAAACACACCAAAGAATGAAACAACGGGGTCACAAATTTGGTATCCTCTGATCGTATCACGAACGCCCTAATCCTCCTCTGCTGACAGTGACAGGTGAGCATGTCCAATCAATTTAATTATAGTTAGTCATGAACTGCCTCTAATGGATTCCAAGAATTGCACCACCTCGGCCATGCTCGGCCGCCGCGACGGCGACTCGGAGGTGCACACGAGGCCCAGCTTCAGCACCTGCACCAGCTCAGCCTCGACGAATCTCCTCATGCTCAGGTCGAAGCAGCCTGAGACCGTGCCGCTCTCCACCATCTCCCTCACGTAGTCGCGCAGGACCACCACCAACACCGTGCCCTGCCGTCCATGGCGGCTGCTCACCGGCTTCCGCCCCGTCACCATCTCCAGCAACACCACCCCGAAGCTGAACACGTCGCACTTGTCGCCGCCGTGCCTCGAGCTCATCGACGACGACGCTAGCTCCGGCGCCACGTAGCCTGGTAGGTTGCTCGGTTCGGGCAGAAGCTTGGATAGCCCGAAATCTGAGAGCTTCGCTTCGTGCTCGTTGTCCAGCAGGATGTTTCTTGATTTGATGTTGAGGTGAAGTACCTGAGGTTTGCAGTCATGGTGAAGGTACGCGAGCGCGCGCGCCGTCGCCACCGCGATCCTGAACCGCCGTTCCCATGGCAGGCCGCCGCCATCACCGCCGGTGCTCGCCGGGCCCGCACGGCGACGGCTGCCGTGGAGGTGATCGTACAATGTGCTGCCATTGTCGACGAACTCGGAGAGAAGAAGCTGGGTCGAGGGTGACCAGTAGTAGCCATGGAAGGTGACAAGGTTGGGGTGGGTGAGGCCACGTAGCCTGCCCATCTCACGCTCGAACTCCTCCTGGCTCGTGATTCTCCCCAGCGTCTCCAGCTTCTTGACGGCGATGGAGGCGCCGCTCTCGAAGCTGGCCCTGTACACGGCGCCGACTGACCCGACGCCGACGAGGCAGTTCCTGTCGAGCACCGCCTTGGTCCCGGCCTCCCAATCCTCGTACCTCGATGCCGAGCTGTTCTTCCTGAAGAGCACCAGCTTTCCGGTGATGGCGGTTGATCCCGGCGACACGATCGCCGCGCTGTCGGAGACGAGGATCTCCTCCTCGTCGTCGTGCTGCTGCTGCTCCCTCCTCCTCTTGTTCTTGTATGCCTTGATGTTCATGGCAGATACGATGCAGATCCCGACGAGTATGGCGGCTGCGATGACGATGGCGACTATCACCGGCACTCCCAATCGCCTCGCGTTCCGGCCTGGACAGGCATGGTCCAATGGCGGACCACAGAGGAATGGATTGCCCATGAATGCCGTTGGGCCGAACTGCTGCAGCAATGGAGAAGATGGGATTGAGCCGGTGAGGTTGTTGAAGGACACGTTGAAGTGTGCCAGGTTGGAGAGGTCGCCGAGCTCCGGCGGGATCACGCCGGTGAGCGCATTCTCCGAGAGGTCAAGGAAATTCAGGTTCTTCAGCTGCGACAGCGCCGCAGGGATGCCGCCGGTGAGGCCCTGTCCATTGGCCCCCAAATTGAGTAGCATCAGGTTGCGGCAATTCGCCATGGTTTCCGGCACCGAGCCGGTGAGCTTGTTCCTGGACGCGTCGAGGTAGGCGAACCTGTCGCCGCATGTCGGGATGCTCGGGATTTCGCCGGCGAAGTTGTTGGAGGAGACGTTGAAGTAGGTGATGTTGACGAGGGCGAGAAGGCCGAACGGTGCGGCGCCGGAGAAGCTGTTGCTCCCGACGTCGAACAGGTCGAGGCTTCGGCAGCCGTCGAGCTTGCCGTCAATGGCGCCGGAGAGCGAGTTGCTCCGGACAGAAATGTAGCTCATCTCCGGCGGCGCGCACAGTTTATCGGGCAGCTCTCCGTCGAGGTTGTTGTAGGAGAAGTCGAATCCGGCGAGGCGAACGCAGTTGCCGATGCCCGGCGGGACGCGGCCGGTGAGCGCGTTGTGCGCGAGCGACACGTAGCGGAGGCGGGGGCACTCGCCGAACAGAGTCGCCGGGATCTCGCCGGAGAACGCGTTGTAGGAGAGGTCGAGCAGCCGCAGCATAGGGAAAGTGCCAAGAAACGCCGGTATCTCCCCGGAGAGCGCGTTCCCGCTGAGGTTGAGCTTGTGGAGCGTGGCCGCGAGGCCGACGAAGCTCGCCGGGATCACGCCGGAGAGGCGGTTGCCGAAGAGCGAGACGGACTCCAGCGCGGGGAGCCGCGCGAGCGACGGGGAGAGCACGCCCTCCAGGCCCTCGCCGTGGAGGCGCAGCCGCTGCACGGCGCCGGACGCGGGGTAGCAGGAGACCCCGCCGAAGTCGCGGCACGGGTCGCCGCCCAGCGTCCAGTTCGCGAGCACCGCGCCCGGATCCGCGGTCACCGCCGCCTTGAACTCCAGCAGCGCCCGCGTCTCCGCCGCCGTCGCCGCGCCCACCGGCGCCGCTGCCCAATTCAGCAGCAGCAGCAGCAGCGGCAGCAAAACCGGCAGCACCGCCGCGGCAGCCGCGCGCGGCGAACGCCTCAT
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| CDS seq | ATGAGGCGTTCGCCGCGCGCGGCTGCCGCGGCGGTGCTGCCGGTTTTGCTGCCGCTGCTGCTGCTGCTGCTGAATTGGGCAGCGGCGCCGGTGGGCGCGGCGACGGCGGCGGAGACGCGGGCGCTGCTGGAGTTCAAGGCGGCGGTGACCGCGGATCCGGGCGCGGTGCTCGCGAACTGGACGCTGGGCGGCGACCCGTGCCGCGACTTCGGCGGGGTCTCCTGCTACCCCGCGTCCGGCGCCGTGCAGCGGCTGCGCCTCCACGGCGAGGGCCTGGAGGGCGTGCTCTCCCCGTCGCTCGCGCGGCTCCCCGCGCTGGAGTCCGTCTCGCTCTTCGGCAACCGCCTCTCCGGCGTGATCCCGGCGAGCTTCGTCGGCCTCGCGGCCACGCTCCACAAGCTCAACCTCAGCGGGAACGCGCTCTCCGGGGAGATACCGGCGTTTCTTGGCACTTTCCCTATGCTGCGGCTGCTCGACCTCTCCTACAACGCGTTCTCCGGCGAGATCCCGGCGACTCTGTTCGGCGAGTGCCCCCGCCTCCGCTACGTGTCGCTCGCGCACAACGCGCTCACCGGCCGCGTCCCGCCGGGCATCGGCAACTGCGTTCGCCTCGCCGGATTCGACTTCTCCTACAACAACCTCGACGGAGAGCTGCCCGATAAACTGTGCGCGCCGCCGGAGATGAGCTACATTTCTGTCCGGAGCAACTCGCTCTCCGGCGCCATTGACGGCAAGCTCGACGGCTGCCGAAGCCTCGACCTGTTCGACGTCGGGAGCAACAGCTTCTCCGGCGCCGCACCGTTCGGCCTTCTCGCCCTCGTCAACATCACCTACTTCAACGTCTCCTCCAACAACTTCGCCGGCGAAATCCCGAGCATCCCGACATGCGGCGACAGGTTCGCCTACCTCGACGCGTCCAGGAACAAGCTCACCGGCTCGGTGCCGGAAACCATGGCGAATTGCCGCAACCTGATGCTACTCAATTTGGGGGCCAATGGACAGGGCCTCACCGGCGGCATCCCTGCGGCGCTGTCGCAGCTGAAGAACCTGAATTTCCTTGACCTCTCGGAGAATGCGCTCACCGGCGTGATCCCGCCGGAGCTCGGCGACCTCTCCAACCTGGCACACTTCAACGTGTCCTTCAACAACCTCACCGGCTCAATCCCATCTTCTCCATTGCTGCAGCAGTTCGGCCCAACGGCATTCATGGGCAATCCATTCCTCTGTGGTCCGCCATTGGACCATGCCTGTCCAGGCCGGAACGCGAGGCGATTGGGAGTGCCGGTGATAGTCGCCATCGTCATCGCAGCCGCCATACTCGTCGGGATCTGCATCGTATCTGCCATGAACATCAAGGCATACAAGAACAAGAGGAGGAGGGAGCAGCAGCAGCACGACGACGAGGAGGAGATCCTCGTCTCCGACAGCGCGGCGATCGTGTCGCCGGGATCAACCGCCATCACCGGAAAGCTGGTGCTCTTCAGGAAGAACAGCTCGGCATCGAGGTACGAGGATTGGGAGGCCGGGACCAAGGCGGTGCTCGACAGGAACTGCCTCGTCGGCGTCGGGTCAGTCGGCGCCGTGTACAGGGCCAGCTTCGAGAGCGGCGCCTCCATCGCCGTCAAGAAGCTGGAGACGCTGGGGAGAATCACGAGCCAGGAGGAGTTCGAGCGTGAGATGGGCAGGCTACGTGGCCTCACCCACCCCAACCTTGTCACCTTCCATGGCTACTACTGGTCACCCTCGACCCAGCTTCTTCTCTCCGAGTTCGTCGACAATGGCAGCACATTGTACGATCACCTCCACGGCAGCCGTCGCCGTGCGGGCCCGGCGAGCACCGGCGGTGATGGCGGCGGCCTGCCATGGGAACGGCGGTTCAGGATCGCGGTGGCGACGGCGCGCGCGCTCGCGTACCTTCACCATGACTGCAAACCTCAGGTACTTCACCTCAACATCAAATCAAGAAACATCCTGCTGGACAACGAGCACGAAGCGAAGCTCTCAGATTTCGGGCTATCCAAGCTTCTGCCCGAACCGAGCAACCTACCAGGCTACGTGGCGCCGGAGCTAGCGTCGTCGTCGATGAGCTCGAGGCACGGCGGCGACAAGTGCGACGTGTTCAGCTTCGGGGTGGTGTTGCTGGAGATGGTGACGGGGCGGAAGCCGGTGAGCAGCCGCCATGGACGGCAGGGCACGGTGTTGGTGGTGGTCCTGCGCGACTACGTGAGGGAGATGGTGGAGAGCGGCACGGTCTCAGGCTGCTTCGACCTGAGCATGAGGAGATTCGTCGAGGCTGAGCTGGTGCAGGTGCTGAAGCTGGGCCTCGTGTGCACCTCCGAGTCGCCGTCGCGGCGGCCGAGCATGGCCGAGGTGGTGCAATTCTTGGAATCCATTAGAGGCAGTTCATGA
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| Protein seq | MRRSPRAAAAAVLPVLLPLLLLLLNWAAAPVGAATAAETRALLEFKAAVTADPGAVLANWTLGGDPCRDFGGVSCYPASGAVQRLRLHGEGLEGVLSPSLARLPALESVSLFGNRLSGVIPASFVGLAATLHKLNLSGNALSGEIPAFLGTFPMLRLLDLSYNAFSGEIPATLFGECPRLRYVSLAHNALTGRVPPGIGNCVRLAGFDFSYNNLDGELPDKLCAPPEMSYISVRSNSLSGAIDGKLDGCRSLDLFDVGSNSFSGAAPFGLLALVNITYFNVSSNNFAGEIPSIPTCGDRFAYLDASRNKLTGSVPETMANCRNLMLLNLGANGQGLTGGIPAALSQLKNLNFLDLSENALTGVIPPELGDLSNLAHFNVSFNNLTGSIPSSPLLQQFGPTAFMGNPFLCGPPLDHACPGRNARRLGVPVIVAIVIAAAILVGICIVSAMNIKAYKNKRRREQQQHDDEEEILVSDSAAIVSPGSTAITGKLVLFRKNSSASRYEDWEAGTKAVLDRNCLVGVGSVGAVYRASFESGASIAVKKLETLGRITSQEEFEREMGRLRGLTHPNLVTFHGYYWSPSTQLLLSEFVDNGSTLYDHLHGSRRRAGPASTGGDGGGLPWERRFRIAVATARALAYLHHDCKPQVLHLNIKSRNILLDNEHEAKLSDFGLSKLLPEPSNLPGYVAPELASSSMSSRHGGDKCDVFSFGVVLLEMVTGRKPVSSRHGRQGTVLVVVLRDYVREMVESGTVSGCFDLSMRRFVEAELVQVLKLGLVCTSESPSRRPSMAEVVQFLESIRGSS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 [UniProtKB/Swiss-Prot:C0LGE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g38800 | LOC_Os10g38800.1 | Chr10 | 20652205 | 20654875 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGGCGTTCGCCGCGCGCGGCTGCCGCGGCGGTGCTGCCGGTTTTGCTGCCGCTGCTGCTGCTGCTGCTGAATTGGGCAGCGGCGCCGGTGGGCGCGGCGACGGCGGCGGAGACGCGGGCGCTGCTGGAGTTCAAGGCGGCGGTGACCGCGGATCCGGGCGCGGTGCTCGCGAACTGGACGCTGGGCGGCGACCCGTGCCGCGACTTCGGCGGGGTCTCCTGCTACCCCGCGTCCGGCGCCGTGCAGCGGCTGCGCCTCCACGGCGAGGGCCTGGAGGGCGTGCTCTCCCCGTCGCTCGCGCGGCTCCCCGCGCTGGAGTCCGTCTCGCTCTTCGGCAACCGCCTCTCCGGCGTGATCCCGGCGAGCTTCGTCGGCCTCGCGGCCACGCTCCACAAGCTCAACCTCAGCGGGAACGCGCTCTCCGGGGAGATACCGGCGTTTCTTGGCACTTTCCCTATGCTGCGGCTGCTCGACCTCTCCTACAACGCGTTCTCCGGCGAGATCCCGGCGACTCTGTTCGGCGAGTGCCCCCGCCTCCGCTACGTGTCGCTCGCGCACAACGCGCTCACCGGCCGCGTCCCGCCGGGCATCGGCAACTGCGTTCGCCTCGCCGGATTCGACTTCTCCTACAACAACCTCGACGGAGAGCTGCCCGATAAACTGTGCGCGCCGCCGGAGATGAGCTACATTTCTGTCCGGAGCAACTCGCTCTCCGGCGCCATTGACGGCAAGCTCGACGGCTGCCGAAGCCTCGACCTGTTCGACGTCGGGAGCAACAGCTTCTCCGGCGCCGCACCGTTCGGCCTTCTCGCCCTCGTCAACATCACCTACTTCAACGTCTCCTCCAACAACTTCGCCGGCGAAATCCCGAGCATCCCGACATGCGGCGACAGGTTCGCCTACCTCGACGCGTCCAGGAACAAGCTCACCGGCTCGGTGCCGGAAACCATGGCGAATTGCCGCAACCTGATGCTACTCAATTTGGGGGCCAATGGACAGGGCCTCACCGGCGGCATCCCTGCGGCGCTGTCGCAGCTGAAGAACCTGAATTTCCTTGACCTCTCGGAGAATGCGCTCACCGGCGTGATCCCGCCGGAGCTCGGCGACCTCTCCAACCTGGCACACTTCAACGTGTCCTTCAACAACCTCACCGGCTCAATCCCATCTTCTCCATTGCTGCAGCAGTTCGGCCCAACGGCATTCATGGGCAATCCATTCCTCTGTGGTCCGCCATTGGACCATGCCTGTCCAGGCCGGAACGCGAGGCGATTGGGAGTGCCGGTGATAGTCGCCATCGTCATCGCAGCCGCCATACTCGTCGGGATCTGCATCGTATCTGCCATGAACATCAAGGCATACAAGAACAAGAGGAGGAGGGAGCAGCAGCAGCACGACGACGAGGAGGAGATCCTCGTCTCCGACAGCGCGGCGATCGTGTCGCCGGGATCAACCGCCATCACCGGAAAGCTGGTGCTCTTCAGGAAGAACAGCTCGGCATCGAGGTACGAGGATTGGGAGGCCGGGACCAAGGCGGTGCTCGACAGGAACTGCCTCGTCGGCGTCGGGTCAGTCGGCGCCGTGTACAGGGCCAGCTTCGAGAGCGGCGCCTCCATCGCCGTCAAGAAGCTGGAGACGCTGGGGAGAATCACGAGCCAGGAGGAGTTCGAGCGTGAGATGGGCAGGCTACGTGGCCTCACCCACCCCAACCTTGTCACCTTCCATGGCTACTACTGGTCACCCTCGACCCAGCTTCTTCTCTCCGAGTTCGTCGACAATGGCAGCACATTGTACGATCACCTCCACGGCAGCCGTCGCCGTGCGGGCCCGGCGAGCACCGGCGGTGATGGCGGCGGCCTGCCATGGGAACGGCGGTTCAGGATCGCGGTGGCGACGGCGCGCGCGCTCGCGTACCTTCACCATGACTGCAAACCTCAGGTACTTCACCTCAACATCAAATCAAGAAACATCCTGCTGGACAACGAGCACGAAGCGAAGCTCTCAGATTTCGGGCTATCCAAGCTTCTGCCCGAACCGAGCAACCTACCAGGCTACGTGGCGCCGGAGCTAGCGTCGTCGTCGATGAGCTCGAGGCACGGCGGCGACAAGTGCGACGTGTTCAGCTTCGGGGTGGTGTTGCTGGAGATGGTGACGGGGCGGAAGCCGGTGAGCAGCCGCCATGGACGGCAGGGCACGGTGTTGGTGGTGGTCCTGCGCGACTACGTGAGGGAGATGGTGGAGAGCGGCACGGTCTCAGGCTGCTTCGACCTGAGCATGAGGAGATTCGTCGAGGCTGAGCTGGTGCAGGTGCTGAAGCTGGGCCTCGTGTGCACCTCCGAGTCGCCGTCGCGGCGGCCGAGCATGGCCGAGGTGGTGCAATTCTTGGAATCCATTAGAGGCAGTTCATGA
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| Protein seq | MRRSPRAAAAAVLPVLLPLLLLLLNWAAAPVGAATAAETRALLEFKAAVTADPGAVLANWTLGGDPCRDFGGVSCYPASGAVQRLRLHGEGLEGVLSPSLARLPALESVSLFGNRLSGVIPASFVGLAATLHKLNLSGNALSGEIPAFLGTFPMLRLLDLSYNAFSGEIPATLFGECPRLRYVSLAHNALTGRVPPGIGNCVRLAGFDFSYNNLDGELPDKLCAPPEMSYISVRSNSLSGAIDGKLDGCRSLDLFDVGSNSFSGAAPFGLLALVNITYFNVSSNNFAGEIPSIPTCGDRFAYLDASRNKLTGSVPETMANCRNLMLLNLGANGQGLTGGIPAALSQLKNLNFLDLSENALTGVIPPELGDLSNLAHFNVSFNNLTGSIPSSPLLQQFGPTAFMGNPFLCGPPLDHACPGRNARRLGVPVIVAIVIAAAILVGICIVSAMNIKAYKNKRRREQQQHDDEEEILVSDSAAIVSPGSTAITGKLVLFRKNSSASRYEDWEAGTKAVLDRNCLVGVGSVGAVYRASFESGASIAVKKLETLGRITSQEEFEREMGRLRGLTHPNLVTFHGYYWSPSTQLLLSEFVDNGSTLYDHLHGSRRRAGPASTGGDGGGLPWERRFRIAVATARALAYLHHDCKPQVLHLNIKSRNILLDNEHEAKLSDFGLSKLLPEPSNLPGYVAPELASSSMSSRHGGDKCDVFSFGVVLLEMVTGRKPVSSRHGRQGTVLVVVLRDYVREMVESGTVSGCFDLSMRRFVEAELVQVLKLGLVCTSESPSRRPSMAEVVQFLESIRGSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.063047 | 0.172527 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0531700 | RBH | 0.0 | 0.103933 | 0.675853 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03570 | RBH | 0.037445 | 0.000000 | 0.274754 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0531700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018020 | RBH | 0.0 | 0.0 | 0.236656 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018400 | RBH | 0.0 | 0.0 | 0.118655 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017790 | RBH | 0.0 | 0.0 | 0.337352 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018100 | RBH | 0.0 | 1.292807 | 0.423345 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0340800 | RBH | 2.658552 | 0.055671 | 0.4912465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018000 | RBH | 0.0 | 0.060051 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0365300 | RBH | 2.371835 | 0.006055 | 3.6530515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018320 | RBH | 0.0 | 0.519156 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017960 | RBH | 0.0 | 0.0 | 0.263941 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018110 | RBH | 0.0 | 0.0 | 0.0 |
