Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g37370 | OGI:10061500 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:20014245-20016620 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAATGAATAAGTTGGGTTTTGCTCGCCGATGGGTTAACTGGATTATGAAGTGTGTTACCTCGGTGAGATACATGGTAAAATTCAATGGAACCCTACTTCAATCATTCGCTCCAACTAGAGGTTTAAGGCAAGGAGATCCTCTCTCGCCCTTCCTATTTTTGTTCGTGGCAGATGGACTGTCATTGCTGCTGAAGGAAAAGGTGGCCCAGAATTCTTTGACCCCTTTTAAAGTCTGCAGAGCTGCACCTGGAATTTCCCACTTACTCTTTGCTGATGATACCCTCTTATTCTTTAAAGCACACCAAAGAGAGGCGGAAGTGGTAAAAGAAGTGCTCTCATCCTATGCCATGGGCACTGGACAATTAATTAACCCAGCCAAATGTTCTATCCTCATGGGAGGAGCCTCGACCCCGGCTGTCAGTGAGGCTATATCAGAAATTTTACAAGTGGAAAGAGACAGGTTTGAAGATAGATATCTGGAATTTCCTACCCCGGAGGGACGGATGCACAAAGGACGTTTTCAGAGTCTGCAAGCTAAGATTTGGAAAAGAGTGATCCAATGGGGTGAGAACCATCTCTCCACGGGTGGAAAAGAAGTGTTGATCAAGGCTGTGATTCAAGCCATCCCAGTATATGTGATGGGGATTTTTAAATTACCTGAATCTGTTATTGATGATCTAACGAAACTAACAAAGAACTTTTGGTGGGATTCCATGAACGGCCAGAGAAAAACGCATTGGAAAGCCTGGGATTCGTTAACGAAACCAAAAAGCTTGGGTGGCCTTGGTTTCAGAGACTATTGGCTTTTCAACCAGGCACTTCTGGCCCGGCAAGCATGGAGGTTGATAACATACCCAGATAGCCTGTGTGCTAGAGTTCTTAAAGCAAAATATTTCCCCCATGGTTCCCTGATTGACACTTCCTTTGGGAGTAACTCGTCCCCAGCATGGAGAAGCATTGAGTATGGCCTAGATTTGTTAAAAAAGGGCATTATTTGGAGAGTGGGTAATGGAAATTCAATTCGGATCTGGCGGGATCCATGGCTGCCAAGAGATCACTCAAGAAGACCAATCACTGGGAAAGCAAACTGCAGACTAAAGTGGGTGTCTGACCTAATTACAGAAGATGGATCCTGGGATGTGCCGAAAATCCATCAGTATTTCCATAATTTGGATGCAGAGGTTATACTGAACATCTGCATTTCTTCAAGATCGGAGGAAGACTTCATTGCCTGGCACCCTGATAAGAACGGTATGTTCTCAGTTCGAAGCGCTTACAGATTGGCAGCTCAGTTAGTGAATATAGAAGAAAGTTCTAGCTCTGGGACAAATAATATTAACAAAGCATGGGAGATGATTTGGAAATGCAAGGTTCCTCAAAAGGTCAAAATCTTTGCTTGGAGGGTGGCCTCCAACTGCCTGGCGACCATGGTAAATAAAAAGAAGAGAAAATTGGAACAATCTGATATGTGCCAAATCTGCGACAGGGAAAATGAAGACGATGCTCATGCTCTCTGCAGGTGCATTCAAGCTAGCCAGCTTTGGTCATGTATGCATAAATCGGGAAGTGTTTCAGTAGATATAAAGGCCTCTGTTTTAGGAAGGTTTTGGCTGTTTGATTGCCTTGAAAAAATTCCAGAATATGAACAGGCCATGTTCTTGATGACTCTGTGGCGCAACTGGTACGTGAGGAATGAGCTAATACATGGCAAGTCAGCCCCGCCGACGGAGACGTCACAGAGATTTATACAGAGCTATGTCGATTTACTGTTCCAGATCCGACAAGCTCCTCAGGCTGACCTGGTAAAAGGAAAGCATGTGGTGAGGACTGTACCTCTGAAAGGAGGGCCTAAATATCGAGTGCTTAACAATCACCAACCATGCTGGGAGAGACCAAAAGATGGCTGGATGAAATTAAATGTGGATGGATCCTTTGACGCTAGCTCCGGTAAGGGGGGTCTTGGAATGATCCTCAGGAATAGCGCTGGTGATATCATCTTCACTTCTTGCAAACCCCTTGAAAGATGCAACAACCCGCTAGAATCAGAGCTGCGTGCCTGTGTTGAAGGGCTTAAGCTGGCGATCCATTGGACTTTGCTTCCGATTCAGGTGGAAACAGATTGTGCCTCAGTGGTCCAGCTTCTGCAGGGTACCGGTAGAGATTTTTCTGTTCTAGCCAACATCATTCATGAAGCGAGGCATCTGCTGGTGGGTGAAAGGGTGATTTCTATTAAGAAAATATGTCGTAGCCAGAATTGCATTAGCCATCATCTTGCAAATACGGCTAGAGCTGATTTTCTTGCTGGATTTTGGTTGGGAGAGAGTTGTAATCTTATCTCACATTTATTAAGCGAGAACTTTATGAGTGAGTAA
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| CDS seq | ATGGCAATGAATAAGTTGGGTTTTGCTCGCCGATGGGTTAACTGGATTATGAAGTGTGTTACCTCGGTGAGATACATGGTAAAATTCAATGGAACCCTACTTCAATCATTCGCTCCAACTAGAGGTTTAAGGCAAGGAGATCCTCTCTCGCCCTTCCTATTTTTGTTCGTGGCAGATGGACTGTCATTGCTGCTGAAGGAAAAGGTGGCCCAGAATTCTTTGACCCCTTTTAAAGTCTGCAGAGCTGCACCTGGAATTTCCCACTTACTCTTTGCTGATGATACCCTCTTATTCTTTAAAGCACACCAAAGAGAGGCGGAAGTGGTAAAAGAAGTGCTCTCATCCTATGCCATGGGCACTGGACAATTAATTAACCCAGCCAAATGTTCTATCCTCATGGGAGGAGCCTCGACCCCGGCTGTCAGTGAGGCTATATCAGAAATTTTACAAGTGGAAAGAGACAGGTTTGAAGATAGATATCTGGAATTTCCTACCCCGGAGGGACGGATGCACAAAGGACGTTTTCAGAGTCTGCAAGCTAAGATTTGGAAAAGAGTGATCCAATGGGGTGAGAACCATCTCTCCACGGGTGGAAAAGAAGTGTTGATCAAGGCTGTGATTCAAGCCATCCCAGTATATGTGATGGGGATTTTTAAATTACCTGAATCTGTTATTGATGATCTAACGAAACTAACAAAGAACTTTTGGTGGGATTCCATGAACGGCCAGAGAAAAACGCATTGGAAAGCCTGGGATTCGTTAACGAAACCAAAAAGCTTGGGTGGCCTTGGTTTCAGAGACTATTGGCTTTTCAACCAGGCACTTCTGGCCCGGCAAGCATGGAGGTTGATAACATACCCAGATAGCCTGTGTGCTAGAGTTCTTAAAGCAAAATATTTCCCCCATGGTTCCCTGATTGACACTTCCTTTGGGAGTAACTCGTCCCCAGCATGGAGAAGCATTGAGTATGGCCTAGATTTGTTAAAAAAGGGCATTATTTGGAGAGTGGGTAATGGAAATTCAATTCGGATCTGGCGGGATCCATGGCTGCCAAGAGATCACTCAAGAAGACCAATCACTGGGAAAGCAAACTGCAGACTAAAGTGGGTGTCTGACCTAATTACAGAAGATGGATCCTGGGATGTGCCGAAAATCCATCAGTATTTCCATAATTTGGATGCAGAGGTTATACTGAACATCTGCATTTCTTCAAGATCGGAGGAAGACTTCATTGCCTGGCACCCTGATAAGAACGGTATGTTCTCAGTTCGAAGCGCTTACAGATTGGCAGCTCAGTTAGTGAATATAGAAGAAAGTTCTAGCTCTGGGACAAATAATATTAACAAAGCATGGGAGATGATTTGGAAATGCAAGGTTCCTCAAAAGGTCAAAATCTTTGCTTGGAGGGTGGCCTCCAACTGCCTGGCGACCATGGTAAATAAAAAGAAGAGAAAATTGGAACAATCTGATATGTGCCAAATCTGCGACAGGGAAAATGAAGACGATGCTCATGCTCTCTGCAGGTGCATTCAAGCTAGCCAGCTTTGGTCATGTATGCATAAATCGGGAAGTGTTTCAGTAGATATAAAGGCCTCTGTTTTAGGAAGGTTTTGGCTGTTTGATTGCCTTGAAAAAATTCCAGAATATGAACAGGCCATGTTCTTGATGACTCTGTGGCGCAACTGGTACGTGAGGAATGAGCTAATACATGGCAAGTCAGCCCCGCCGACGGAGACGTCACAGAGATTTATACAGAGCTATGTCGATTTACTGTTCCAGATCCGACAAGCTCCTCAGGCTGACCTGGTAAAAGGAAAGCATGTGGTGAGGACTGTACCTCTGAAAGGAGGGCCTAAATATCGAGTGCTTAACAATCACCAACCATGCTGGGAGAGACCAAAAGATGGCTGGATGAAATTAAATGTGGATGGATCCTTTGACGCTAGCTCCGGTAAGGGGGGTCTTGGAATGATCCTCAGGAATAGCGCTGGTGATATCATCTTCACTTCTTGCAAACCCCTTGAAAGATGCAACAACCCGCTAGAATCAGAGCTGCGTGCCTGTGTTGAAGGGCTTAAGCTGGCGATCCATTGGACTTTGCTTCCGATTCAGGTGGAAACAGATTGTGCCTCAGTGGTCCAGCTTCTGCAGGGTACCGGTAGAGATTTTTCTGTTCTAGCCAACATCATTCATGAAGCGAGGCATCTGCTGGTGGGTGAAAGGGTGATTTCTATTAAGAAAATATGTCGTAGCCAGAATTGCATTAGCCATCATCTTGCAAATACGGCTAGAGCTGATTTTCTTGCTGGATTTTGGTTGGGAGAGAGTTGTAATCTTATCTCACATTTATTAAGCGAGAACTTTATGAGTGAGTAA
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| Protein seq | MAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLSPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGTGRDFSVLANIIHEARHLLVGERVISIKKICRSQNCISHHLANTARADFLAGFWLGESCNLISHLLSENFMSE |
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| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g37370 | LOC_Os10g37370.1 | Chr10 | 20014245 | 20016620 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAATGAATAAGTTGGGTTTTGCTCGCCGATGGGTTAACTGGATTATGAAGTGTGTTACCTCGGTGAGATACATGGTAAAATTCAATGGAACCCTACTTCAATCATTCGCTCCAACTAGAGGTTTAAGGCAAGGAGATCCTCTCTCGCCCTTCCTATTTTTGTTCGTGGCAGATGGACTGTCATTGCTGCTGAAGGAAAAGGTGGCCCAGAATTCTTTGACCCCTTTTAAAGTCTGCAGAGCTGCACCTGGAATTTCCCACTTACTCTTTGCTGATGATACCCTCTTATTCTTTAAAGCACACCAAAGAGAGGCGGAAGTGGTAAAAGAAGTGCTCTCATCCTATGCCATGGGCACTGGACAATTAATTAACCCAGCCAAATGTTCTATCCTCATGGGAGGAGCCTCGACCCCGGCTGTCAGTGAGGCTATATCAGAAATTTTACAAGTGGAAAGAGACAGGTTTGAAGATAGATATCTGGAATTTCCTACCCCGGAGGGACGGATGCACAAAGGACGTTTTCAGAGTCTGCAAGCTAAGATTTGGAAAAGAGTGATCCAATGGGGTGAGAACCATCTCTCCACGGGTGGAAAAGAAGTGTTGATCAAGGCTGTGATTCAAGCCATCCCAGTATATGTGATGGGGATTTTTAAATTACCTGAATCTGTTATTGATGATCTAACGAAACTAACAAAGAACTTTTGGTGGGATTCCATGAACGGCCAGAGAAAAACGCATTGGAAAGCCTGGGATTCGTTAACGAAACCAAAAAGCTTGGGTGGCCTTGGTTTCAGAGACTATTGGCTTTTCAACCAGGCACTTCTGGCCCGGCAAGCATGGAGGTTGATAACATACCCAGATAGCCTGTGTGCTAGAGTTCTTAAAGCAAAATATTTCCCCCATGGTTCCCTGATTGACACTTCCTTTGGGAGTAACTCGTCCCCAGCATGGAGAAGCATTGAGTATGGCCTAGATTTGTTAAAAAAGGGCATTATTTGGAGAGTGGGTAATGGAAATTCAATTCGGATCTGGCGGGATCCATGGCTGCCAAGAGATCACTCAAGAAGACCAATCACTGGGAAAGCAAACTGCAGACTAAAGTGGGTGTCTGACCTAATTACAGAAGATGGATCCTGGGATGTGCCGAAAATCCATCAGTATTTCCATAATTTGGATGCAGAGGTTATACTGAACATCTGCATTTCTTCAAGATCGGAGGAAGACTTCATTGCCTGGCACCCTGATAAGAACGGTATGTTCTCAGTTCGAAGCGCTTACAGATTGGCAGCTCAGTTAGTGAATATAGAAGAAAGTTCTAGCTCTGGGACAAATAATATTAACAAAGCATGGGAGATGATTTGGAAATGCAAGGTTCCTCAAAAGGTCAAAATCTTTGCTTGGAGGGTGGCCTCCAACTGCCTGGCGACCATGGTAAATAAAAAGAAGAGAAAATTGGAACAATCTGATATGTGCCAAATCTGCGACAGGGAAAATGAAGACGATGCTCATGCTCTCTGCAGGTGCATTCAAGCTAGCCAGCTTTGGTCATGTATGCATAAATCGGGAAGTGTTTCAGTAGATATAAAGGCCTCTGTTTTAGGAAGGTTTTGGCTGTTTGATTGCCTTGAAAAAATTCCAGAATATGAACAGGCCATGTTCTTGATGACTCTGTGGCGCAACTGGTACGTGAGGAATGAGCTAATACATGGCAAGTCAGCCCCGCCGACGGAGACGTCACAGAGATTTATACAGAGCTATGTCGATTTACTGTTCCAGATCCGACAAGCTCCTCAGGCTGACCTGGTAAAAGGAAAGCATGTGGTGAGGACTGTACCTCTGAAAGGAGGGCCTAAATATCGAGTGCTTAACAATCACCAACCATGCTGGGAGAGACCAAAAGATGGCTGGATGAAATTAAATGTGGATGGATCCTTTGACGCTAGCTCCGGTAAGGGGGGTCTTGGAATGATCCTCAGGAATAGCGCTGGTGATATCATCTTCACTTCTTGCAAACCCCTTGAAAGATGCAACAACCCGCTAGAATCAGAGCTGCGTGCCTGTGTTGAAGGGCTTAAGCTGGCGATCCATTGGACTTTGCTTCCGATTCAGGTGGAAACAGATTGTGCCTCAGTGGTCCAGCTTCTGCAGGGTACCGGTAGAGATTTTTCTGTTCTAGCCAACATCATTCATGAAGCGAGGCATCTGCTGGTGGGTGAAAGGGTGATTTCTATTAAGAAAATATGTCGTAGCCAGAATTGCATTAGCCATCATCTTGCAAATACGGCTAGAGCTGATTTTCTTGCTGGATTTTGGTTGGGAGAGAGTTGTAATCTTATCTCACATTTATTAAGCGAGAACTTTATGAGTGAGTAA
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| Protein seq | MAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLSPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGTGRDFSVLANIIHEARHLLVGERVISIKKICRSQNCISHHLANTARADFLAGFWLGESCNLISHLLSENFMSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g50190 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011510 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0287000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0267100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011300 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011270 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011690 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011250 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011760 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018590 | RBH | 0.0 | 0.0 | 2.554594 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018660 | RBH | 0.0 | 0.0 | 5.496843 |
