Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g35300 | OGI:10058850 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:18873473-18875014 | ||||||||
| Gene Symbol | DOF27, OsDof27, Dof27, OsDof-27 | ||||||||||
| DNA seq | CTTAAAAAAGGGAAAAAAAAAGCATAACACATAGATGCACGTACAAACTAGAAATGGGCAGAGTCGCACAAATACACAAATTTAACTACAGTAGGTCAACATATACCCACGAGTTAATAACCTGAATCCAAACTACACTAGTACAGTCATAGGCTCTTGTTACGCTAATTTAGTATGCGCATACGACATACGTATATACTTTCATAGCGCATGTGTATGCATGTATGCATACATAGGCTATACATGCATATACACACACATATATATACGTATACGTATTCGGTATATATATCCGTAGCTCCGTATACGTATACGTATCAATACAAGCACGGGTTACTTAACATGAACCATCTAGACCGGGCATGTCATCTTGCAGCCACCCGTTCCAGTACTGCACGCCGCCGCCGCCGCAGTTCGCGTCCGGCGCCGCCGTCGACGCCGCTCCGACCGCGCCGCCGACATCGCCGGTGGCGGCCTGAGGTGGAGCCGCGAACGCCGCCATTTGCTGCCACGCGGTCAGGTCGATGCTGTAGCCGCCTCCGCCACCGGCGGTAGCCGGCGCCATCAGCATCTGCCTCAGGAGATCGGGGAACGACGACGACGTCGGCGGCGCCGCCGCCGGCGCGACGACATGGGCAGAAGCCGCCGTCGAGGCTGTGGCGCCGGCCTTGCCTCCGCCGGCGGCGCGCTTGCTGTTCTTGCGGCCGCCGCCGACGGGGACGTCGCGGAGCGTGCCGCCCTCCGTCCAGTGGCGGCGGCACGCCTTGCAGAGGTACCGCGGCTGCGTGCGGCTGTAGTTGTTGTAGTAGCAGAACTTGGTGTTCGCCGAGCCGCACCGCGGGCACTGCCTCGGCGGCGGCCTCGGCAGCGGCGGGTGCCCGGCGTGCCTGCCACCCTGCCTCGGCGCCGCCGCCGCGTTCACCGCCTCGACGCCGCCGCCGCCAATTCCGCCATTGGCAGCAGCGGCGTATCCCTGCCCCTGCACGCCAAGATCGTCGTCGAACACCATCAGCTCATCGTCAAGATCAGTCAACCATCGAGCTAATCCGTGACGTACCATGAGAAGGGGAGGAGGAGGAGGAGGAGGCCTAGGCGGGGTCAGGTAAGAGAGGGGCGACGAAGCGGAAGAGGAAGAAGAGCCCAGGAACGGCGACGACATGGCTCCCGCGACGCCGCGGCGAGGGCCAGGGTAGCTTCTTGCCGGCGGCGGAGACGACGACGACGAGCTGCGCCTGCGCGCGCTTGCTCCGCGCCGGGGACGACGACGACGACGACGACGAGGAGTAGTAGTAGTCGTACCACGGTGAACCCCTGCGCATGTCGGACCGGTGAGCCGCCGCCGCCGCCGATCGAACACTCTCCTTCTTCTTCCTCCCCCCAACCAGCTGCTGCTGCTGCAGCTGCTTAGCAATATCAATTAGTACAGATTAATGAATAATCTAGCTAAATCTTACTTCTAGTAGCTGTGTGGTGACTGTGACAGTGTGAGCTAGTAGCTAGAGGGCAAGGAGGAGGAGGAAGCGAAGGTGGAAAGCCATGGAG
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| CDS seq | ATGTCGTCGCCGTTCCTGGGCTCTTCTTCCTCTTCCGCTTCGTCGCCCCTCTCTTACCTGACCCCGCCTAGGCCTCCTCCTCCTCCTCCTCCCCTTCTCATGGTACGTCACGGATTAGCTCGATGGTTGACTGATCTTGACGATGAGCTGATGGTGTTCGACGACGATCTTGGCGTGCAGGGGCAGGGATACGCCGCTGCTGCCAATGGCGGAATTGGCGGCGGCGGCGTCGAGGCGGTGAACGCGGCGGCGGCGCCGAGGCAGGGTGGCAGGCACGCCGGGCACCCGCCGCTGCCGAGGCCGCCGCCGAGGCAGTGCCCGCGGTGCGGCTCGGCGAACACCAAGTTCTGCTACTACAACAACTACAGCCGCACGCAGCCGCGGTACCTCTGCAAGGCGTGCCGCCGCCACTGGACGGAGGGCGGCACGCTCCGCGACGTCCCCGTCGGCGGCGGCCGCAAGAACAGCAAGCGCGCCGCCGGCGGAGGCAAGGCCGGCGCCACAGCCTCGACGGCGGCTTCTGCCCATGTCGTCGCGCCGGCGGCGGCGCCGCCGACGTCGTCGTCGTTCCCCGATCTCCTGAGGCAGATGCTGATGGCGCCGGCTACCGCCGGTGGCGGAGGCGGCTACAGCATCGACCTGACCGCGTGGCAGCAAATGGCGGCGTTCGCGGCTCCACCTCAGGCCGCCACCGGCGATGTCGGCGGCGCGGTCGGAGCGGCGTCGACGGCGGCGCCGGACGCGAACTGCGGCGGCGGCGGCGTGCAGTACTGGAACGGGTGGCTGCAAGATGACATGCCCGGTCTAGATGGTTCATGTTAA
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| Protein seq | MSSPFLGSSSSSASSPLSYLTPPRPPPPPPPLLMVRHGLARWLTDLDDELMVFDDDLGVQGQGYAAAANGGIGGGGVEAVNAAAAPRQGGRHAGHPPLPRPPPRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRAAGGGKAGATASTAASAHVVAPAAAPPTSSSFPDLLRQMLMAPATAGGGGGYSIDLTAWQQMAAFAAPPQAATGDVGGAVGAASTAAPDANCGGGGVQYWNGWLQDDMPGLDGSC |
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| Function | Dof zinc finger protein DOF4.1 [UniProtKB/Swiss-Prot:Q9M161] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g35300 | LOC_Os10g35300.1 | Chr10 | 18873518 | 18875014 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGTCGCCGTTCCTGGGCTCTTCTTCCTCTTCCGCTTCGTCGCCCCTCTCTTACCTGACCCCGCCTAGGCCTCCTCCTCCTCCTCCTCCCCTTCTCATGGGGCAGGGATACGCCGCTGCTGCCAATGGCGGAATTGGCGGCGGCGGCGTCGAGGCGGTGAACGCGGCGGCGGCGCCGAGGCAGGGTGGCAGGCACGCCGGGCACCCGCCGCTGCCGAGGCCGCCGCCGAGGCAGTGCCCGCGGTGCGGCTCGGCGAACACCAAGTTCTGCTACTACAACAACTACAGCCGCACGCAGCCGCGGTACCTCTGCAAGGCGTGCCGCCGCCACTGGACGGAGGGCGGCACGCTCCGCGACGTCCCCGTCGGCGGCGGCCGCAAGAACAGCAAGCGCGCCGCCGGCGGAGGCAAGGCCGGCGCCACAGCCTCGACGGCGGCTTCTGCCCATGTCGTCGCGCCGGCGGCGGCGCCGCCGACGTCGTCGTCGTTCCCCGATCTCCTGAGGCAGATGCTGATGGCGCCGGCTACCGCCGGTGGCGGAGGCGGCTACAGCATCGACCTGACCGCGTGGCAGCAAATGGCGGCGTTCGCGGCTCCACCTCAGGCCGCCACCGGCGATGTCGGCGGCGCGGTCGGAGCGGCGTCGACGGCGGCGCCGGACGCGAACTGCGGCGGCGGCGGCGTGCAGTACTGGAACGGGTGGCTGCAAGATGACATGCCCGGTCTAGATGGTTCATGTTAA
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| Protein seq | MSSPFLGSSSSSASSPLSYLTPPRPPPPPPPLLMGQGYAAAANGGIGGGGVEAVNAAAAPRQGGRHAGHPPLPRPPPRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRAAGGGKAGATASTAASAHVVAPAAAPPTSSSFPDLLRQMLMAPATAGGGGGYSIDLTAWQQMAAFAAPPQAATGDVGGAVGAASTAAPDANCGGGGVQYWNGWLQDDMPGLDGSC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g35300 | LOC_Os10g35300.2 | Chr10 | 18873473 | 18875014 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGTCGCCGTTCCTGGGCTCTTCTTCCTCTTCCGCTTCGTCGCCCCTCTCTTACCTGACCCCGCCTAGGCCTCCTCCTCCTCCTCCTCCCCTTCTCATGGTACGTCACGGATTAGCTCGATGGTTGACTGATCTTGACGATGAGCTGATGGTGTTCGACGACGATCTTGGCGTGCAGGGGCAGGGATACGCCGCTGCTGCCAATGGCGGAATTGGCGGCGGCGGCGTCGAGGCGGTGAACGCGGCGGCGGCGCCGAGGCAGGGTGGCAGGCACGCCGGGCACCCGCCGCTGCCGAGGCCGCCGCCGAGGCAGTGCCCGCGGTGCGGCTCGGCGAACACCAAGTTCTGCTACTACAACAACTACAGCCGCACGCAGCCGCGGTACCTCTGCAAGGCGTGCCGCCGCCACTGGACGGAGGGCGGCACGCTCCGCGACGTCCCCGTCGGCGGCGGCCGCAAGAACAGCAAGCGCGCCGCCGGCGGAGGCAAGGCCGGCGCCACAGCCTCGACGGCGGCTTCTGCCCATGTCGTCGCGCCGGCGGCGGCGCCGCCGACGTCGTCGTCGTTCCCCGATCTCCTGAGGCAGATGCTGATGGCGCCGGCTACCGCCGGTGGCGGAGGCGGCTACAGCATCGACCTGACCGCGTGGCAGCAAATGGCGGCGTTCGCGGCTCCACCTCAGGCCGCCACCGGCGATGTCGGCGGCGCGGTCGGAGCGGCGTCGACGGCGGCGCCGGACGCGAACTGCGGCGGCGGCGGCGTGCAGTACTGGAACGGGTGGCTGCAAGATGACATGCCCGGTCTAGATGGTTCATGTTAA
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| Protein seq | MSSPFLGSSSSSASSPLSYLTPPRPPPPPPPLLMVRHGLARWLTDLDDELMVFDDDLGVQGQGYAAAANGGIGGGGVEAVNAAAAPRQGGRHAGHPPLPRPPPRQCPRCGSANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRAAGGGKAGATASTAASAHVVAPAAAPPTSSSFPDLLRQMLMAPATAGGGGGYSIDLTAWQQMAAFAAPPQAATGDVGGAVGAASTAAPDANCGGGGVQYWNGWLQDDMPGLDGSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.199230 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0496000 | RBH | 0.0 | 0.0 | 0.849418 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0496000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015960 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016200 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015590 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016090 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015920 | RBH | 0.0 | 0.000000 | 1.945569 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313300 | RBH | 0.5677435 | 22.074092 | 3.390889 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015830 | RBH | 0.000000 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0335500 | RBH | 1.066588 | 51.086296 | 0.831544 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015590 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015720 | RBH | 0.0 | 0.0 | 0.086806 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016130 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015740 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015880 | RBH | 0.0 | 7.518310 | 1.521152 |
