Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g34890 | OGI:10051930 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:18623008-18628016 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGTGGGTATCAAGCCCATTTCCCTCGATGCACTGTCTATCACATTACATGGTAGCCCCTTGGTAAACTGATCTGCCAGATTTCTAGCCGTTTGGACATAGTCCAATGCTATCACTCCGGAGTTTTTCTGCTTTCTGACAGATTTCAGTCTTCTCTTGATGTGTCTAGATGACTTCATGTTGTCCTTTGAACTGTTCACTTTAATAATCACTATTTGATTATCGCAGTTCATTAGGATAGCTGGCACTGGTTTTTCAACCACCGGCAAATCCATCAGGAGTTCACGAAGCCACTCGGCCTCAACTGTCGCAGTATCTAGTGCTGTAAGTTCTGCTTCCATTGTTGACCTCGTTAAGATGGTCTGCTTGCAAGACTTCCAGGAAACAGCGCCACCTCCAAGTGTGAACACATATCCACTTGTGGCTTTTATCTCATCAGCATCAGATATCCAGTTTGAGTCACTATACCCTTCTAGTACTTTTGGATACCCGGTATAGTGAATTCCATAGCTCATAGTACCCTTTAGATAGCGCATTACTCTTTCCAGAGCCCGCCAATGATCATCTCCCGGATTTGAGACAAACCGGCTCAGCTTGCTTACAGCAAATGAGATGTCAGGCCTCGTTGCGCTAGCCAAGTACATCAATGAACCAATGATTTGAGAGTATCTCAGCTGATCCCTTGCTATTCTTCGGTTTTTCCTTAATAGCACGCTGGGATCATAAGGAGTAGGAGCTGGCTTGCAGTCACTATATCCAAAGCGACTCAAAACCTTGTCCACATAGTGGGATTGCACAAGTGTAATCCCACCCTCATCTCCTCTTTGTAGTTTGATGTTAAGAATAACATCAGCCTCTCCCAAATCTTTCATTTCAAAACTCTTGGACAGATAGTCTTTGACCTCCTCAATCACATTAAGGCTGGTCCCAAAGATCAGTATGTCATCGACATATAAGCACAAGATCACCCCTTCTCCCCCACCATAGCGATAGTATACACATTTGTCAGCTTCGTTCACAACAAAGCCTGCAGATGTAAGCGTGGTGTCAAACTTCTCATGCCATTGCTTAGGTGCTTGCTTGAGGCCATACAAGGATTTCAATAGTTTACACACCATTCCCTCCTGACCTTCTAGTACATACCCGTCTGGTTGATCCATATAGATCTCCTCCTCCAGCTCTCCGTTTAGGAAAGCTGTCTTAACGTCCATCTGATGGACGAGAAGACCATGAGAGGCTGCCAGAGCAAGTAGTACTCGAATCGTGGTCAAGCGAGCAACTGGTGAGTATGTGTCGAAGAAGTCCTCGCCTTCCTTTTGGGTATAACCCTTGGCCACAAGCCTTGCCTTGTACTTTTCGATTGTACCATCAGGCCTAAGCTTTTTCTTGAAAACCCATTTGCATCCTATGGGCTTGCACCCATATGGACGCTCAACGACTTCCCAAGTACCATTAGACATAATCGAGTCCATTTCACTGCATACTGCTTCCTTCCAGTAGTCAGCGTCAGGAGATGAATATGCCTCTTCTATGGTTCTTGGGGTGTCATCCACGAGGTATACAATGTAGTCATCTCCAAAGGATTTTGCAACCCTTTGTCTCTTACTCTTGCGAGTATCTACAATGTTGTCCTCCTCAGGATTTTCCTCAGGCGTTTGATCATTGTGTTCTATCGGTGCAAAGTGCTCATGGGGCATGACAGTTTCTTTACTAGAAGTGCTAGGTGTATATTTCATAGGAAATTCATTCTCAAAGAATGTAGCATCTCTGGACTCAAGAATTGTACCAACATGCATGTCGGGTACTCCAGAGTTTACTATTAAGAATCTATAACCCACACTGTGGATAGCATAACCAAGAAACACACAATCAACAGTTTTTGGTCCAAGTTTCCGCTTTTTGGCTATAGGTACATTTACCTTGGCCAAACAGCCCCATGTTCGTAGGTATGAGAGATTTAATTTCTTCCTTTCCCATTCCTCGAATGGTGTTACTTCCTTATGCTTCATTGGAATTTTATTCAGGACATGACACGCAGTCAAAACTGCCTCACCCCACCATTCCTTGGAAAGCCCCGCAGTGTCTAACATGGCATTCACCATCTCAGTTAGAGTACGGTTCTTTCTTTCGGCCACCCCATTTGATTGGGGTGAATAGGGAGGCGTCATCTCATGAATAATTCCAAACTCTTCGCAAAAGGATGCAAACTCATTGGAAAAATACTCCCCACCTCTATCAGACCTCAACCGTTTGATTTTCCTTTCAAGTTGGTTTTCTACCTCAGCTTTATAGATTTTAAAGAAATGCAATGCCTCATCCTTTGTTTTCAATAGATACACATAGCAAAATCTAGTGCAATCATCTATCAGTGTCATGAAATATTTCTTTCCCCCTTTAGTCAACACGCCGTTCATTTCGCACAAATCGGAATGAATAAGTTCTAGAGGTGCCAAATTCCTCGCCTCAGATGCCTTGTGAGGCTTGCGAGGTTGTTTCGATTGAACACAAGTATGGCACTTGGAACCTTTTACCAAAGTGAATTTTGGAATTAAACTCATGTTAGCTAAGCGCGTCATACAACCGAAATTCACATGACAGAGTCGCGAATGCCACACATTAGACTCATCATTCTCGCTAATATGGTTCACAGCATTATGATTATTACACATGTCATTCAAAGAAAAGCGGAACAAGCCTCCGCTGTCATAACCTTTTCCAACAAAAGTCCCATATTTAGATACGACACATTTATTGGACTCAAACACAAGTCTAAAATCTTCTCTACACAATAGAGAGCCGCTAACTAGATTCTTCTTTATTGAAGGGACATGCTGCACATTCTTCAGCTGCACGGTCTTTCCCGAAGTAAACTTCAGATCGACCGTACCAACACCATGAACAGCCGCAAGCGACCCGTTTCCCATCAACAAGGAGGAACCTCTCCCGACCTGATAAGAAGAAAATAGAGAAATGTCAGCACATACATGAATATTAGCACCAGTGTCCACCCACCAATCAGGTGAATGAAAAACAGAGAGAACTGTAGGTAATATTTTACCGTACCCCGATGTTCCTCCGCCCTCACTAATGATCATGTTGGCAGACTTCCTGTCTTTGCGCTCAGGACAGTCCTTGGCCCAATGCCCAGACTTGCCACACACAAAGCAGTCTCCCTTTGCCTTTCCCTTGCTTTTCTTCTTAAAATTGGTTGCAGCCTTGGGTTTGACATCAGGCTTGACTTTCTTGTTGTTGTGGGATGCATGAGGGTTCTTCTTCTGTACCATATTGGCACTAGAACCTCCCTCAACCTTTTTGCCCCGGACGTCCTTTGCCCTCGCCTTCTCCTCAACACCCAAAGAGCCAATGAGATCAGGAACACTGAACTCTTGTCTCTTGTGCTTTAGAGAAGTGGCAAAGTCCGACCAAGAAGGTGGTAGTTTGGCAATAATGCCACCTGCCACAAACTTGTCCGGCAACTCACAGTTGTTGTTCTCAAGTTCCTTAGCCAGCATCTGAATCTCATGAGCTTGTTCAACTACAGAACGGTCATCGACCATCTTGTAGTCATAGAACTGCTCCATAACATACAGCTCACTGCCGGCGTCAGAAACTCCGAACTTGGCCTCAAGTGCATCCCGCATGTCCTTCCCAGAAGGCATGTGCATGTACACGTCCACTATGTTGTCAGCGAGTACACTGATCAATGCTCCACGGAACAGGCAATCCGAAGCCTCGAACTTAGCCTCTTCCTCAGGAGAAAGAGGTGGTTCACTTCGTTTGCCCCGTGAAACATAGAAGCACTGCATCGCTGTCAACCACAATAGTGCACGTGTTTTCCATCTCTTATAGTTTGAACCATCAAAGGCATGTGGTTTCAGTGCAGCAGCAAAGCCAACTACCGAAAATGACCTATCAGGTTTTTGGATTGTTGGAAATTTGGTCATAATTCGGCATATTTTAATCCAAAATAACAAGATAATAAACATGATATTTACAATAGGATTTGATCCAGTGATAGTGGTGAATGTAATCAACATGAGCATGCTTAACGTTGAATAAGCATCAACAATCACATAATGACACAATGTTGACATTGCGATGAACATTAACAGTAAAACTTCTAATTGAAATAATGTAATAAGGTTATACCCCAAGAATGGTCCTCCGCTGGAGTTTGAGGCAGTATTGCCTCCGTTGGTGTTGACGGGAGTCTCCTTCTCCTTGTCTCCAGTGTTCGACATGTTGGTGAAGATGAAGTAGATGTTGACGAACAGTGAGTAGTCGCGCCTTGCGCTCCCCAAAAACATGATCGCCCGCCCGTCTGTGCAAACGTCGCAGCAACGCGTGGTTTCGGAGGCCTACTCTCCCAACGCGTGTGCACACACTCGTCGGGATGGGATTACCGTAGCAACAACAGCTTTGGAAAATGGATGAAAGTGTGTCTTCTTTTTCTCGCGGGAGATCAAATCCATTCCCATTTTATAAGAGGAATGGAAGATGAAGAGTAAGAGTCATGGAATAGGAAGAGGAATGGAGCAACTAATTGTCATCAACTAGCCATGAACCATCCTTCACTACACAACCATCAACCAACAATCAATTAAGAGTAATTGATGTAAGTTACCAATGGAATAGGAAGAGGAATAGAGCAACTAAATGTCATCAACTAGCCATGAACCATCCTCCACTACACAACCATCAACCATCCATCAATTAGGACTAATTGATATAAGTTACCAATTCCTTAATCAAATGGATTAATTCTCAAAACTCTTCATCCCATTGATATCCCATAGAAGAATGAATTCACATGAATTCCTAGCATAATGAGCCTTGGAATTTATTTGATTTAATTGATTTAAATGGATTAATTACCCAATTAAATCTAACAGGACTTCCCCGGGAGGTAGCCGCTGGGACGGCACGCGCCGCCGGCGACGGCGCCGGGGCGGAGGGAGGAGGCGAGGTGGGTGGTGGAGAGCGCGGCCAGGAGGAAGATCATCGCCAT
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| CDS seq | ATGGCGATGATCTTCCTCCTGGCCGCGCTCTCCACCACCCACCTCGCCTCCTCCCTCCGCCCCGGCGCCGTCGCCGGCGGCGCGTGCCGTCCCAGCGGCTACCTCCCGGGGAAGTCCTACGGGCGGGCGATCATGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCCGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACCATTCTTGGGGTATAACCTTATTACATTATTTCAATTAGAAGTTTTACTGTTAATGTTCATCGCAATGTCAACATTGTGTCATTATGTGATTGTTGATGCTTATTCAACGTTAAGCATGCTCATGTTGATTACATTCACCACTATCACTGGATCAAATCCTATTGTAAATATCATGTTTATTATCTTGTTATTTTGGATTAAAATATGCCGAATTATGACCAAATTTCCAACAATCCAAAAACCTGATAGGTCATTTTCGGTAGTTGGCTTTGCTGCTGCACTGAAACCACATGCCTTTGATGGTTCAAACTATAAGAGATGGAAAACACGTGCACTATTGTGGTTGACAGCGATGCAGTGCTTCTATGTTTCACGGGGCAAACGAAGTGAACCACCTCTTTCTCCTGAGGAAGAGGCTAAGTTCGAGGCTTCGGATTGCCTGTTCCGTGGAGCATTGATCAGTGTACTCGCTGACAACATAGTGGACGTGTACATGCACATGCCTTCTGGGAAGGACATGCGGGATGCACTTGAGGCCAAGTTCGGAGTTTCTGACGCCGGCAGTGAGCTGTATGTTATGGAGCAGTTCTATGACTACAAGATGGTCGATGACCGTTCTGTAGTTGAACAAGCTCATGAGATTCAGATGCTGGCTAAGGAACTTGAGAACAACAACTGTGAGTTGCCGGACAAGTTTGTGGCAGGTGGCATTATTGCCAAACTACCACCTTCTTGGTCGGACTTTGCCACTTCTCTAAAGCACAAGAGACAAGAGTTCAGTGTTCCTGATCTCATTGGCTCTTTGGGTGTTGAGGAGAAGGCGAGGGCAAAGGACGTCCGGGGCAAAAAGGTTGAGGGAGGTTCTAGTGCCAATATGGTACAGAAGAAGAACCCTCATGCATCCCACAACAACAAGAAAGTCAAGCCTGATGTCAAACCCAAGGCTGCAACCAATTTTAAGAAGAAAAGCAAGGGAAAGGCAAAGGGAGACTGCTTTGTGTGTGGCAAGTCTGGGCATTGGGCCAAGGACTGTCCTGAGCGCAAAGACAGGAAGTCTGCCAACATGATCATTAGTGAGGGCGGAGGAACATCGGGGTACGGTAAAATATTACCTACAGTTCTCTCTGTTTTTCATTCACCTGATTGGTGGGTGGACACTGGTGCTAATATTCATGTATGTGCTGACATTTCTCTATTTTCTTCTTATCAGGTCGGGAGAGGTTCCTCCTTGTTGATGGGAAACGGGTCGCTTGCGGCTGTTCATGGTGTTGGTACGGTCGATCTGAAGTTTACTTCGGGAAAGACCGTGCAGCTGAAGAATGTGCAGCATGTCCCTTCAATAAAGAAGAATCTAGTTAGCGGCTCTCTATTGTGTAGAGAAGATTTTAGACTTGTGTTTGAGTCCAATAAATGTGTCGTATCTAAATATGGGACTTTTGTTGGAAAAGGTTATGACAGCGGAGGCTTGTTCCGCTTTTCTTTGAATGACATGTGTAATAATCATAATGCTGTGAACCATATTAGCGAGAATGATGAGTCTAATGTGTGGCATTCGCGACTCTGTCATGTGAATTTCGGTTGTATGACGCGCTTAGCTAACATGAGTTTAATTCCAAAATTCACTTTGGTAAAAGGTTCCAAGTGCCATACTTGTGTTCAATCGAAACAACCTCGCAAGCCTCACAAGGCATCTGAGGCGAGGAATTTGGCACCTCTAGAACTTATTCATTCCGATTTGTGCGAAATGAACGGCGTGTTGACTAAAGGGGGAAAGAAATATTTCATGACACTGATAGATGATTGCACTAGATTTTGCTATGTGTATCTATTGAAAACAAAGGATGAGGCATTGCATTTCTTTAAAATCTATAAAGCTGAGGTAGAAAACCAACTTGAAAGGAAAATCAAACGGTTGAGGTCTGATAGAGGTGGGGAGTATTTTTCCAATGAGTTTGCATCCTTTTGCGAAGAGTTTGGAATTATTCATGAGATGACGCCTCCCTATTCACCCCAATCAAATGGGGTGGCCGAAAGAAAGAACCGTACTCTAACTGAGATGGTGAATGCCATGTTAGACACTGCGGGGCTTTCCAAGGAATGGTGGGGTGAGGCAGTTTTGACTGCGTGTCATGTCCTGAATAAAATTCCAATGAAGCATAAGGAAGTAACACCATTCGAGGAATGGGAAAGGAAGAAATTAAATCTCTCATACCTACGAACATGGGGCTGTTTGGCCAAGGTAAATGTACCTATAGCCAAAAAGCGGAAACTTGGACCAAAAACTGTTGATTGTGTGTTTCTTGGTTATGCTATCCACAGTGTGGGTTATAGATTCTTAATAGTAAACTCTGGAGTACCCGACATGCATGTTGGTACAATTCTTGAGTCCAGAGATGCTACATTCTTTGAGAATGAATTTCCTATGAAATATACACCTAGCACTTCTAGTAAAGAAACTGTCATGCCCCATGAGCACTTTGCACCGATAGAACACAATGATCAAACGCCTGAGGAAAATCCTGAGGAGGACAACATTGTAGATACTCGCAAGAGTAAGAGACAAAGGGTTGCAAAATCCTTTGGAGATGACTACATTGTATACCTCGTGGATGACACCCCAAGAACCATAGAAGAGGCATATTCATCTCCTGACGCTGACTACTGGAAGGAAGCAGTATGCAGTGAAATGGACTCGATTATGTCTAATGGTACTTGGGAAGTCGTTGAGCGTCCATATGGGTGCAAGCCCATAGGATGCAAATGGGTTTTCAAGAAAAAGCTTAGGCCTGATGGTACAATCGAAAAGTACAAGGCAAGGCTTGTGGCCAAGGGTTATACCCAAAAGGAAGGCGAGGACTTCTTCGACACATACTCACCAGTTGCTCGCTTGACCACGATTCGAGTACTACTTGCTCTGGCAGCCTCTCATGGTCTTCTCGTCCATCAGATGGACGTTAAGACAGCTTTCCTAAACGGAGAGCTGGAGGAGGAGATCTATATGGATCAACCAGACGGGTATGTACTAGAAGGTCAGGAGGGAATGGTGTGTAAACTATTGAAATCCTTGTATGGCCTCAAGCAAGCACCTAAGCAATGGCATGAGAAGTTTGACACCACGCTTACATCTGCAGGCTTTGTTGTGAACGAAGCTGACAAATGTGTATACTATCGCTATGGTGGGGGAGAAGGGGTGATCTTGTGCTTATATGTCGATGACATACTGATCTTTGGGACCAGCCTTAATGTGATTGAGGAGGTCAAAGACTATCTGTCCAAGAGTTTTGAAATGAAAGATTTGGGAGAGGCTGATGTTATTCTTAACATCAAACTACAAAGAGGAGATGAGGGTGGGATTACACTTGTGCAATCCCACTATGTGGACAAGGTTTTGAGTCGCTTTGGATATAGTGACTGCAAGCCAGCTCCTACTCCTTATGATCCCAGCGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAGCTGAGATACTCTCAAATCATTGGTTCATTGATGTACTTGGCTAGCGCAACGAGGCCTGACATCTCATTTGCTGTAAGCAAGCTGAGCCGGTTTGTCTCAAATCCGGGAGATGATCATTGGCGGGCTCTGGAAAGAGTAATGCGCTATCTAAAGGGTACTATGAGCTATGGAATTCACTATACCGGGTATCCAAAAGTACTAGAAGGGTATAGTGACTCAAACTGGATATCTGATGCTGATGAGATAAAAGCCACAAGTGGATATGTGTTCACACTTGGAGGTGGCGCTGTTTCCTGGAAGTCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGCAGAACTTACAGCACTAGATACTGCGACAGTTGAGGCCGAGTGGCTTCGTGAACTCCTGATGGATTTGCCGGTGGTTGAAAAACCAGTGCCAGCTATCCTAATGAACTGCGATAATCAAATAGTGATTATTAAAGTGAACAGTTCAAAGGACAACATGAAGTCATCTAGACACATCAAGAGAAGACTGAAATCTGTCAGAAAGCAGAAAAACTCCGGAGTGATAGCATTGGACTATGTCCAAACGGCTAGAAATCTGGCAGATCAGTTTACCAAGGGGCTACCATGTAATGTGATAGACAGTGCATCGAGGGAAATGGGCTTGATACCCACCTAA
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| Protein seq | MAMIFLLAALSTTHLASSLRPGAVAGGACRPSGYLPGKSYGRAIMFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGYNLITLFQLEVLLLMFIAMSTLCHYVIVDAYSTLSMLMLITFTTITGSNPIVNIMFIILLFWIKICRIMTKFPTIQKPDRSFSVVGFAAALKPHAFDGSNYKRWKTRALLWLTAMQCFYVSRGKRSEPPLSPEEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQIVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPCNVIDSASREMGLIPT |
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| Function | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g34890 | LOC_Os10g34890.1 | Chr10 | 18623008 | 18628016 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGATGATCTTCCTCCTGGCCGCGCTCTCCACCACCCACCTCGCCTCCTCCCTCCGCCCCGGCGCCGTCGCCGGCGGCGCGTGCCGTCCCAGCGGCTACCTCCCGGGGAAGTCCTACGGGCGGGCGATCATGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCCGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACCATTCTTGGGGTATAACCTTATTACATTATTTCAATTAGAAGTTTTACTGTTAATGTTCATCGCAATGTCAACATTGTGTCATTATGTGATTGTTGATGCTTATTCAACGTTAAGCATGCTCATGTTGATTACATTCACCACTATCACTGGATCAAATCCTATTGTAAATATCATGTTTATTATCTTGTTATTTTGGATTAAAATATGCCGAATTATGACCAAATTTCCAACAATCCAAAAACCTGATAGGTCATTTTCGGTAGTTGGCTTTGCTGCTGCACTGAAACCACATGCCTTTGATGGTTCAAACTATAAGAGATGGAAAACACGTGCACTATTGTGGTTGACAGCGATGCAGTGCTTCTATGTTTCACGGGGCAAACGAAGTGAACCACCTCTTTCTCCTGAGGAAGAGGCTAAGTTCGAGGCTTCGGATTGCCTGTTCCGTGGAGCATTGATCAGTGTACTCGCTGACAACATAGTGGACGTGTACATGCACATGCCTTCTGGGAAGGACATGCGGGATGCACTTGAGGCCAAGTTCGGAGTTTCTGACGCCGGCAGTGAGCTGTATGTTATGGAGCAGTTCTATGACTACAAGATGGTCGATGACCGTTCTGTAGTTGAACAAGCTCATGAGATTCAGATGCTGGCTAAGGAACTTGAGAACAACAACTGTGAGTTGCCGGACAAGTTTGTGGCAGGTGGCATTATTGCCAAACTACCACCTTCTTGGTCGGACTTTGCCACTTCTCTAAAGCACAAGAGACAAGAGTTCAGTGTTCCTGATCTCATTGGCTCTTTGGGTGTTGAGGAGAAGGCGAGGGCAAAGGACGTCCGGGGCAAAAAGGTTGAGGGAGGTTCTAGTGCCAATATGGTACAGAAGAAGAACCCTCATGCATCCCACAACAACAAGAAAGTCAAGCCTGATGTCAAACCCAAGGCTGCAACCAATTTTAAGAAGAAAAGCAAGGGAAAGGCAAAGGGAGACTGCTTTGTGTGTGGCAAGTCTGGGCATTGGGCCAAGGACTGTCCTGAGCGCAAAGACAGGAAGTCTGCCAACATGATCATTAGTGAGGGCGGAGGAACATCGGGGTACGGTAAAATATTACCTACAGTTCTCTCTGTTTTTCATTCACCTGATTGGTGGGTGGACACTGGTGCTAATATTCATGTATGTGCTGACATTTCTCTATTTTCTTCTTATCAGGTCGGGAGAGGTTCCTCCTTGTTGATGGGAAACGGGTCGCTTGCGGCTGTTCATGGTGTTGGTACGGTCGATCTGAAGTTTACTTCGGGAAAGACCGTGCAGCTGAAGAATGTGCAGCATGTCCCTTCAATAAAGAAGAATCTAGTTAGCGGCTCTCTATTGTGTAGAGAAGATTTTAGACTTGTGTTTGAGTCCAATAAATGTGTCGTATCTAAATATGGGACTTTTGTTGGAAAAGGTTATGACAGCGGAGGCTTGTTCCGCTTTTCTTTGAATGACATGTGTAATAATCATAATGCTGTGAACCATATTAGCGAGAATGATGAGTCTAATGTGTGGCATTCGCGACTCTGTCATGTGAATTTCGGTTGTATGACGCGCTTAGCTAACATGAGTTTAATTCCAAAATTCACTTTGGTAAAAGGTTCCAAGTGCCATACTTGTGTTCAATCGAAACAACCTCGCAAGCCTCACAAGGCATCTGAGGCGAGGAATTTGGCACCTCTAGAACTTATTCATTCCGATTTGTGCGAAATGAACGGCGTGTTGACTAAAGGGGGAAAGAAATATTTCATGACACTGATAGATGATTGCACTAGATTTTGCTATGTGTATCTATTGAAAACAAAGGATGAGGCATTGCATTTCTTTAAAATCTATAAAGCTGAGGTAGAAAACCAACTTGAAAGGAAAATCAAACGGTTGAGGTCTGATAGAGGTGGGGAGTATTTTTCCAATGAGTTTGCATCCTTTTGCGAAGAGTTTGGAATTATTCATGAGATGACGCCTCCCTATTCACCCCAATCAAATGGGGTGGCCGAAAGAAAGAACCGTACTCTAACTGAGATGGTGAATGCCATGTTAGACACTGCGGGGCTTTCCAAGGAATGGTGGGGTGAGGCAGTTTTGACTGCGTGTCATGTCCTGAATAAAATTCCAATGAAGCATAAGGAAGTAACACCATTCGAGGAATGGGAAAGGAAGAAATTAAATCTCTCATACCTACGAACATGGGGCTGTTTGGCCAAGGTAAATGTACCTATAGCCAAAAAGCGGAAACTTGGACCAAAAACTGTTGATTGTGTGTTTCTTGGTTATGCTATCCACAGTGTGGGTTATAGATTCTTAATAGTAAACTCTGGAGTACCCGACATGCATGTTGGTACAATTCTTGAGTCCAGAGATGCTACATTCTTTGAGAATGAATTTCCTATGAAATATACACCTAGCACTTCTAGTAAAGAAACTGTCATGCCCCATGAGCACTTTGCACCGATAGAACACAATGATCAAACGCCTGAGGAAAATCCTGAGGAGGACAACATTGTAGATACTCGCAAGAGTAAGAGACAAAGGGTTGCAAAATCCTTTGGAGATGACTACATTGTATACCTCGTGGATGACACCCCAAGAACCATAGAAGAGGCATATTCATCTCCTGACGCTGACTACTGGAAGGAAGCAGTATGCAGTGAAATGGACTCGATTATGTCTAATGGTACTTGGGAAGTCGTTGAGCGTCCATATGGGTGCAAGCCCATAGGATGCAAATGGGTTTTCAAGAAAAAGCTTAGGCCTGATGGTACAATCGAAAAGTACAAGGCAAGGCTTGTGGCCAAGGGTTATACCCAAAAGGAAGGCGAGGACTTCTTCGACACATACTCACCAGTTGCTCGCTTGACCACGATTCGAGTACTACTTGCTCTGGCAGCCTCTCATGGTCTTCTCGTCCATCAGATGGACGTTAAGACAGCTTTCCTAAACGGAGAGCTGGAGGAGGAGATCTATATGGATCAACCAGACGGGTATGTACTAGAAGGTCAGGAGGGAATGGTGTGTAAACTATTGAAATCCTTGTATGGCCTCAAGCAAGCACCTAAGCAATGGCATGAGAAGTTTGACACCACGCTTACATCTGCAGGCTTTGTTGTGAACGAAGCTGACAAATGTGTATACTATCGCTATGGTGGGGGAGAAGGGGTGATCTTGTGCTTATATGTCGATGACATACTGATCTTTGGGACCAGCCTTAATGTGATTGAGGAGGTCAAAGACTATCTGTCCAAGAGTTTTGAAATGAAAGATTTGGGAGAGGCTGATGTTATTCTTAACATCAAACTACAAAGAGGAGATGAGGGTGGGATTACACTTGTGCAATCCCACTATGTGGACAAGGTTTTGAGTCGCTTTGGATATAGTGACTGCAAGCCAGCTCCTACTCCTTATGATCCCAGCGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAGCTGAGATACTCTCAAATCATTGGTTCATTGATGTACTTGGCTAGCGCAACGAGGCCTGACATCTCATTTGCTGTAAGCAAGCTGAGCCGGTTTGTCTCAAATCCGGGAGATGATCATTGGCGGGCTCTGGAAAGAGTAATGCGCTATCTAAAGGGTACTATGAGCTATGGAATTCACTATACCGGGTATCCAAAAGTACTAGAAGGGTATAGTGACTCAAACTGGATATCTGATGCTGATGAGATAAAAGCCACAAGTGGATATGTGTTCACACTTGGAGGTGGCGCTGTTTCCTGGAAGTCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGCAGAACTTACAGCACTAGATACTGCGACAGTTGAGGCCGAGTGGCTTCGTGAACTCCTGATGGATTTGCCGGTGGTTGAAAAACCAGTGCCAGCTATCCTAATGAACTGCGATAATCAAATAGTGATTATTAAAGTGAACAGTTCAAAGGACAACATGAAGTCATCTAGACACATCAAGAGAAGACTGAAATCTGTCAGAAAGCAGAAAAACTCCGGAGTGATAGCATTGGACTATGTCCAAACGGCTAGAAATCTGGCAGATCAGTTTACCAAGGGGCTACCATGTAATGTGATAGACAGTGCATCGAGGGAAATGGGCTTGATACCCACCTAA
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| Protein seq | MAMIFLLAALSTTHLASSLRPGAVAGGACRPSGYLPGKSYGRAIMFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGYNLITLFQLEVLLLMFIAMSTLCHYVIVDAYSTLSMLMLITFTTITGSNPIVNIMFIILLFWIKICRIMTKFPTIQKPDRSFSVVGFAAALKPHAFDGSNYKRWKTRALLWLTAMQCFYVSRGKRSEPPLSPEEEAKFEASDCLFRGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDRSVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLIGSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRKSANMIISEGGGTSGYGKILPTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHKEVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPEENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSEMDSIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEGVILCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHYVDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWRALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKATSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVPAILMNCDNQIVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFTKGLPCNVIDSASREMGLIPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.038056 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0432200 | SBH | 1.240045 | 1.497546 | 2.642219 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34580 | SBH | 0.008273 | 0.043046 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0432200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015520 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0014220 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013720 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015460 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013920 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0269900 | RBH | 0.006785 | 0.008306 | 0.002952 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015400 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0349800 | SBH | 0.005062 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015060 | SBH | 0.083288 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013940 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015170 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014190 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015330 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015340 | SBH | 0.788138 | 0.0 | 0.0 |
