Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g34310 | OGI:10057220 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:18297833-18300228 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATTGCATTTCAATATTTCATATAAGCTGTTTTTTTTTCGAATCATTCGTACAGAGATGTTAACTCTAATCCATTCGTAACAGGTGAGGACATTGCTATTGCTGAGATTGCAATCTCTTCTGTCATTTGTATGGGCATTAACAATAGATGGGATAAGAAATTTACACAAGAGACCGTTAACTATCTGCAGTTACTTTGGTACGTTAGTCTTACCTAGACTAGATGCTCAATTGGCCAGAATCAAGGGGCCAGGCCCATCTTCAAAAGCCATGGTGAATACTAGCTGACCATCTCCATTATGAGCACAATCAGGTACTCCAGTTTGCCAGCATTGTTTCATTTACTTCCAATTGCGAATGCTTGCTTGATGAAGGTCATAGATTCCTACAATAATCACAAAGTAAAGAATTACCAGACCAAAACTAAGAGAACCTAAAAAAGTAAGGAGCGTCATTTCTCACTTAGAAAACAATTCAACATTTCATTGTATCAATCCTATGAATAACCAAGTAGTGGAAAGCTATATTAATATGAGAGCATACCATACTTCTCAGGATGATGCTGGGTTTTCAGAAGCTTGTGAGACAGTGCACCCTCTAATATCTGGTGTATAGCCTTTTTCCATCATCCCCTCTTTTATCGTTTCATAAGTGATCCCGTTTGGAACTAGACATTTGTCCAACATCTCATTGAGTAGATCATTAGCTTCATCCATCTTCCCTATCTGGCAGAAATACTTGATGAACACATTGTACGTAACCACATTTGCCCGTTTCCGACATTTTTCCATCCTGGTTCTAATTTCATAGGCAGACTTAATGTTACCCTTATCACAGAACCCCTGTATTATGGTATTGTAGGTCAGATGGTTTGGTTCCAATCCAACTTCCGACATTTCATCCAAGAGCTTTACAGCTTTCCGTACCTCACCTTTGCAGCACAAAGCACCAATAAGCACATTGTAAGTGACGACGTCTGCTTCAATACCTTTCTCCTTCATCTCATCCAGAAGGCCAGAAGCACTCCTCCAATCCCCACTGCGGCTAAACCCTGTTATCAAGCAATTATATGTTGTGACATTGGGACTGATCCCCTTCTTTGCCATTGCCTCCTTCACCGCCATTGCATCCTCCATTTTTCCAAGACGGCGATACACATCGATCAAGATATTGTAAATAACCACATCAGGTTCCACATTCCTCTCTGTCATACCATCAATCCAATCATTGGCATCTGCCATCATTCCCTTCTTACAAAACCCTTTCAGAACACAGCCAAAGGTGATTTCATTGGGTGACAGCCCCAAATCCTCCATCTCCTCCATCAGCTTCACCCCTTCCTCCACCTTACCCTCACTGCAGAGACCTGAAATTAGCGAATTATACGTCACGACACTCGCAGCGATCCCCTGCTGCTTCATCTCCTCGAAGACTCTCACTGCGGCCGCAGTATTCGAGTTCTTGCAATACCCATTGATCAACACACCAAATGTAACTGCAGTCGGTGAGATCCCGGCTTCGACCATCTCCTTCAAAAGCATGTCGACATGGTACATGTTCCCAGCTCCACCCTTCTTGCAGTACCCATCGATGAGGCTATTGTAGGTGGCCACAGAGGGAGCCAGACCCCATGCCTTGATGTCCTTGGCGACATCGCCGGCTTTGCGGAGCTGGCCGATCCTGCAGAGGCCGGAGATGACGGTGTTGAAGGTGTAGATGTCCGGTGACACGCGCCGCCGCAGCGCGCTCCTGAACGCCTTCTCGGCGAGGTCGACCCGCTTGGCGCCGACGAGGCCGGCGAGAAGGGCGTTCACGGAGGAGGTGGAGGGGCGGTGCCGCGGGTGGCTCTCCCCGGCGAGGAGGAACGCGTCGTACGCCCTGAGGGGCTGGGATGCCCTGGCGAGGGCGAGGACGAGCATGTCGGCGATGAGCGGCGTGGATGCGGACGCGGACGCGGACGGGGAGGGGAGAGCGCGGAGGATGGATGCGGGGGAGTGGAGGCGCGCCGCGGCGAGGACGTGGAGCTCGGAGCGGAGGAGGGGGTAGAGCCCCTTGGAGGCGAGGCGGGCGAGGAGGAGCCCGTGGAGCCGGAGCGGGAGCGGCGCGCGGAAGTGGGCGCGCGACCACCGCGCGAGGGAGACGAGGTCCGGGAGGGGAGGCGGCGGCGCTGTGCGGAGGAGGAGGTGGAGGAGTCGGTGCGCGGCCGCCGCGGTCGCGGCGCCGGTGAGCGCCTGCACGAGGCCGAAGCGGCCGGCGGCGAGGTGGCCGAGCAGCGTGGCGAGCGGCATGGCGAGTTTGCGGCGCCGGCGACGCCTATTGGGGAGAGTAACATGTTCTTTTCAGGACTTGAAAAGAAACATAATTGTTGCGAATGTTAGGACATGATTACATGAATAT
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| CDS seq | ATGCCGCTCGCCACGCTGCTCGGCCACCTCGCCGCCGGCCGCTTCGGCCTCGTGCAGGCGCTCACCGGCGCCGCGACCGCGGCGGCCGCGCACCGACTCCTCCACCTCCTCCTCCGCACAGCGCCGCCGCCTCCCCTCCCGGACCTCGTCTCCCTCGCGCGGTGGTCGCGCGCCCACTTCCGCGCGCCGCTCCCGCTCCGGCTCCACGGGCTCCTCCTCGCCCGCCTCGCCTCCAAGGGGCTCTACCCCCTCCTCCGCTCCGAGCTCCACGTCCTCGCCGCGGCGCGCCTCCACTCCCCCGCATCCATCCTCCGCGCTCTCCCCTCCCCGTCCGCGTCCGCGTCCGCATCCACGCCGCTCATCGCCGACATGCTCGTCCTCGCCCTCGCCAGGGCATCCCAGCCCCTCAGGGCGTACGACGCGTTCCTCCTCGCCGGGGAGAGCCACCCGCGGCACCGCCCCTCCACCTCCTCCGTGAACGCCCTTCTCGCCGGCCTCGTCGGCGCCAAGCGGGTCGACCTCGCCGAGAAGGCGTTCAGGAGCGCGCTGCGGCGGCGCGTGTCACCGGACATCTACACCTTCAACACCGTCATCTCCGGCCTCTGCAGGATCGGCCAGCTCCGCAAAGCCGGCGATGTCGCCAAGGACATCAAGGCATGGGGTCTGGCTCCCTCTGTGGCCACCTACAATAGCCTCATCGATGGGTACTGCAAGAAGGGTGGAGCTGGGAACATGTACCATGTCGACATGCTTTTGAAGGAGATGGTCGAAGCCGGGATCTCACCGACTGCAGTTACATTTGGTGTGTTGATCAATGGGTATTGCAAGAACTCGAATACTGCGGCCGCAGTGAGAGTCTTCGAGGAGATGAAGCAGCAGGGGATCGCTGCGAGTGTCGTGACGTATAATTCGCTAATTTCAGGTCTCTGCAGTGAGGGTAAGGTGGAGGAAGGGGTGAAGCTGATGGAGGAGATGGAGGATTTGGGGCTGTCACCCAATGAAATCACCTTTGGCTGTGTTCTGAAAGGGTTTTGTAAGAAGGGAATGATGGCAGATGCCAATGATTGGATTGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACAATATCTTGATCGATGTGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGA
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| Protein seq | MPLATLLGHLAAGRFGLVQALTGAATAAAAHRLLHLLLRTAPPPPLPDLVSLARWSRAHFRAPLPLRLHGLLLARLASKGLYPLLRSELHVLAAARLHSPASILRALPSPSASASASTPLIADMLVLALARASQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIRGCTVSQASENPASS |
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| Function | Pentatricopeptide repeat-containing protein At1g09820 [UniProtKB/Swiss-Prot:O04504] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g34310 | LOC_Os10g34310.1 | Chr10 | 18297833 | 18300119 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCGCTCGCCACGCTGCTCGGCCACCTCGCCGCCGGCCGCTTCGGCCTCGTGCAGGCGCTCACCGGCGCCGCGACCGCGGCGGCCGCGCACCGACTCCTCCACCTCCTCCTCCGCACAGCGCCGCCGCCTCCCCTCCCGGACCTCGTCTCCCTCGCGCGGTGGTCGCGCGCCCACTTCCGCGCGCCGCTCCCGCTCCGGCTCCACGGGCTCCTCCTCGCCCGCCTCGCCTCCAAGGGGCTCTACCCCCTCCTCCGCTCCGAGCTCCACGTCCTCGCCGCGGCGCGCCTCCACTCCCCCGCATCCATCCTCCGCGCTCTCCCCTCCCCGTCCGCGTCCGCGTCCGCATCCACGCCGCTCATCGCCGACATGCTCGTCCTCGCCCTCGCCAGGGCATCCCAGCCCCTCAGGGCGTACGACGCGTTCCTCCTCGCCGGGGAGAGCCACCCGCGGCACCGCCCCTCCACCTCCTCCGTGAACGCCCTTCTCGCCGGCCTCGTCGGCGCCAAGCGGGTCGACCTCGCCGAGAAGGCGTTCAGGAGCGCGCTGCGGCGGCGCGTGTCACCGGACATCTACACCTTCAACACCGTCATCTCCGGCCTCTGCAGGATCGGCCAGCTCCGCAAAGCCGGCGATGTCGCCAAGGACATCAAGGCATGGGGTCTGGCTCCCTCTGTGGCCACCTACAATAGCCTCATCGATGGGTACTGCAAGAAGGGTGGAGCTGGGAACATGTACCATGTCGACATGCTTTTGAAGGAGATGGTCGAAGCCGGGATCTCACCGACTGCAGTTACATTTGGTGTGTTGATCAATGGGTATTGCAAGAACTCGAATACTGCGGCCGCAGTGAGAGTCTTCGAGGAGATGAAGCAGCAGGGGATCGCTGCGAGTGTCGTGACGTATAATTCGCTAATTTCAGGTCTCTGCAGTGAGGGTAAGGTGGAGGAAGGGGTGAAGCTGATGGAGGAGATGGAGGATTTGGGGCTGTCACCCAATGAAATCACCTTTGGCTGTGTTCTGAAAGGGTTTTGTAAGAAGGGAATGATGGCAGATGCCAATGATTGGATTGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACAATATCTTGATCGATGTGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGA
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| Protein seq | MPLATLLGHLAAGRFGLVQALTGAATAAAAHRLLHLLLRTAPPPPLPDLVSLARWSRAHFRAPLPLRLHGLLLARLASKGLYPLLRSELHVLAAARLHSPASILRALPSPSASASASTPLIADMLVLALARASQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIRGCTVSQASENPASS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g34310 | LOC_Os10g34310.2 | Chr10 | 18297837 | 18300228 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCGCTCGCCACGCTGCTCGGCCACCTCGCCGCCGGCCGCTTCGGCCTCGTGCAGGCGCTCACCGGCGCCGCGACCGCGGCGGCCGCGCACCGACTCCTCCACCTCCTCCTCCGCACAGCGCCGCCGCCTCCCCTCCCGGACCTCGTCTCCCTCGCGCGGTGGTCGCGCGCCCACTTCCGCGCGCCGCTCCCGCTCCGGCTCCACGGGCTCCTCCTCGCCCGCCTCGCCTCCAAGGGGCTCTACCCCCTCCTCCGCTCCGAGCTCCACGTCCTCGCCGCGGCGCGCCTCCACTCCCCCGCATCCATCCTCCGCGCTCTCCCCTCCCCGTCCGCGTCCGCGTCCGCATCCACGCCGCTCATCGCCGACATGCTCGTCCTCGCCCTCGCCAGGGCATCCCAGCCCCTCAGGGCGTACGACGCGTTCCTCCTCGCCGGGGAGAGCCACCCGCGGCACCGCCCCTCCACCTCCTCCGTGAACGCCCTTCTCGCCGGCCTCGTCGGCGCCAAGCGGGTCGACCTCGCCGAGAAGGCGTTCAGGAGCGCGCTGCGGCGGCGCGTGTCACCGGACATCTACACCTTCAACACCGTCATCTCCGGCCTCTGCAGGATCGGCCAGCTCCGCAAAGCCGGCGATGTCGCCAAGGACATCAAGGCATGGGGTCTGGCTCCCTCTGTGGCCACCTACAATAGCCTCATCGATGGGTACTGCAAGAAGGGTGGAGCTGGGAACATGTACCATGTCGACATGCTTTTGAAGGAGATGGTCGAAGCCGGGATCTCACCGACTGCAGTTACATTTGGTGTGTTGATCAATGGGTATTGCAAGAACTCGAATACTGCGGCCGCAGTGAGAGTCTTCGAGGAGATGAAGCAGCAGGGGATCGCTGCGAGTGTCGTGACGTATAATTCGCTAATTTCAGGTCTCTGCAGTGAGGGTAAGGTGGAGGAAGGGGTGAAGCTGATGGAGGAGATGGAGGATTTGGGGCTGTCACCCAATGAAATCACCTTTGGCTGTGTTCTGAAAGGGTTTTGTAAGAAGGGAATGATGGCAGATGCCAATGATTGGATTGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACAATATCTTGATCGATGTGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGA
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| Protein seq | MPLATLLGHLAAGRFGLVQALTGAATAAAAHRLLHLLLRTAPPPPLPDLVSLARWSRAHFRAPLPLRLHGLLLARLASKGLYPLLRSELHVLAAARLHSPASILRALPSPSASASASTPLIADMLVLALARASQPLRAYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIRGCTVSQASENPASS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.104649 | 1.367069 | 0.343337 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0484300 | RBH | 1.664867 | 2.045889 | 1.393654 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34370 | RBH | 1.731027 | 2.139928 | 1.398820 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0484300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015040 | RBH | 0.331759 | 0.000000 | 4.079916 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015300 | RBH | 0.240180 | 0.000000 | 0.752456 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014740 | RBH | 0.879085 | 2.048049 | 3.273233 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015080 | RBH | 0.167130 | 0.027758 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015000 | RBH | 7.872499 | 2.335391 | 3.806829 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0301700 | RBH | 8.946212 | 2.0146 | 2.45222 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014940 | RBH | 0.452944 | 0.226444 | 0.917400 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | SBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014660 | RBH | 0.076923 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014580 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015000 | RBH | 10.267508 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014690 | RBH | 0.173483 | 0.0 | 0.433336 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015250 | RBH | 0.827474 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014880 | RBH | 0.610678 | 1.753430 | 0.794334 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014920 | RBH | 1.409044 | 0.0 | 4.416099 |
