Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g32760 | OGI:10054650 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:17155342-17157744 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTGACAACGGTTTTTTTTCCTTTGGCACGTGAGATCACGTGATGGCTACAACATCACCAACACAAAAATGTTGCAACACAACAAAACTTCCTTGTTGCAATGTTTACCACGATATATTTACAATAGGTGTGACATGGTGCACGGGAGGTGTTCGTCCGTTCTAGCTTCTTCTCCTCTCCCTGTCCCGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGGCCGCGTCAGCTCCCGCGACCTGCGCGACCGGTCGAGCATGTCCAGCATCGCCGGCGTCACGTACGACACGGTGATCCCCGTCGGGAGCTCCGACGATCCCCCGCCTCCGCCGTGAGCGTGGCGGCGCGGCGCCACCTCGCCGGACATCTGCCTCGACGTGGCGCGCTGCTGCGCGTGCGAGCTCAGCCCGGCGAGCACGTACGCGCGCCCGGACAGCTCGTACTGCCGCCGGTCCGCCACGCGGGCGCGCATCTCCCGCAGCTCCCCGGACAGCGCCGCGCACATGGCGTCCCCGGCGCGCGCCGCGGCGGACCGCGCCACCGCGCGCTGCCTGCTCCGGAGGATCTCCGCCGCCTCCGCGTACTCGCCGCGCTCCGCCGCCGCCCGCGCCAGCGCGATGTCGTCGATGGCTTCCACCCGGACAAGCTCCCGGTCCACCTCCACGGAGCGCTCGGCGACGCCGGACTCCGCCCGCGACGGCCTGAGCACCACCGCCTCCTCGTCGCCGGCCACGCTCGTGGTCCGTCCGGTCTCCATGTCTCGGTAAGAGCAGCTTACTTCGATCAGGTGGGTGACGTCATCCCAGGCGGGGGCTCTCGGGACGACGACGAACAGCAGGAAGCTCCTCTCCTCGTCGGCGTAGAGCTCGCCGACGTCGACCTTGGCGGCGCGGCCGTCGTCTTCGATGTGGCTCTTGTAGCGGCCGGACTTGACCGCCGTGACGCGGACGCCCGTGTCCACGCACGCGACGTCGAGGCGGAGCTCCTGCACGGCGACGGAGAGGAGGCCACCGATGCACTGCGCGAACCCGTCCTGGATGGCCGCCTCGTTCTCGATGAAGGAGAACGTGCCGCCGGTGACCTCGGCGATGGTGTGCATCGCCGCCGCGTCGTGGTCCTTGCCGAAGCCGAACGTGTGGACCGGCGGGGCGCGGCCGCCGCCGCCGCCGGCGTCGGCGCGCACCAAGGACGGCGGCACGAGCGCGTCGTAGTTGGCGTCGCGGTCGTAGCCGCCGCGCGGCGGCACGGTGTACGTGTCCTGGCCGTCGGAGAGGAGGATGACGCTCTCGACGGCGTTCCGGTAGAGCCGGTCGTCGAGCACCTTGGCGGCCTTGCGGAGCGCCGCCCCGATGTTGGTGCCGCCGCGCGCCGAGAGGGACCCCACGGCGCGCTTCGCGTGGGCCTTGCCGGCGTCGGTCATGCGCGACAGCCGCATCAGGCGGCTCGCGCCGGAGGAGAAGGAGATGACGCAGAGGCGGTCGCCGGGGCCGAGGTTGTCGATGACGAACCCCATGGCCTGCTTCAGCAGCGCCAGCTTGTTCCCCACCATGCTCCCGCTCACGTCGAGCACGGTCACCAGGTCGAGCGGCGCCCGCTGCGCCTCGGCGGCGGCGCCGCCGCCACCGCCCGTAGGAGCCCTGGCGTGGACGAGCACCGCGAAGTCCTCTCGACACGCGTCCCTCGCCACGGCCGAGTTCTCACAGTGCGTCGCGAGCGCCACCGCCGACCCACCACCACCATCCGACGCCACGCTCGCCGCGCCGCCGCCGTGCCTCCGCTCCCCGAGACGCCTCGGCGCGCGGACCAGCGGCTCGTCGTCGTCGAACACCCGTGGCTCCACAGGCCGAAAGAACGGCTGCGCCGCCGACGCCGACGCCGACGCGGACGCGCCCGGCGGCGCCGCGTCGTTGCCGCGGCGGAACGACGGGAGCTCGCGCCACCGCGCGTGGCAGAGCGGGCAGGCGATGCGTCCGCGCGCGACGGTGCCGGAGATGCAGTGGAAGTGGAACTGGTGCGAGCACTCCGCCGTGAACACGGCGTCGCCGCCGCCGCGGCCGCCGCGGCGCATGTCGCCATGGCAGATGCCGCACGGGGCGCTGTCCATGCCGCCCGCCGCGAGGCTTTGACCGAGAAAAAAACCCTCCTTGGTGTGGCGGCAACCCACCAACGTGTAGGATTTGATGAATCATTTTGATTGGACGAAAATGTGTTCTTGACTCGTCGTTGGAATTGCGTTCGCGTATGCACCGCGTTGAACGCGTTCATTAGGGTCCTAAACAAGTCACCGGGTTTCTGCGAATTAGTCTCGAACCATCGATTTGGTGGAGTATTGTAATCGTGTTTATGGGTTGACTAGTTAAGTGGATCTGATTTTGCTGGAGTATAATAATGTGTCTTTATGTCTG
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| CDS seq | ATGGACAGCGCCCCGTGCGGCATCTGCCATGGCGACATGCGCCGCGGCGGCCGCGGCGGCGGCGACGCCGTGTTCACGGCGGAGTGCTCGCACCAGTTCCACTTCCACTGCATCTCCGGCACCGTCGCGCGCGGACGCATCGCCTGCCCGCTCTGCCACGCGCGGTGGCGCGAGCTCCCGTCGTTCCGCCGCGGCAACGACGCGGCGCCGCCGGGCGCGTCCGCGTCGGCGTCGGCGTCGGCGGCGCAGCCGTTCTTTCGGCCTGTGGAGCCACGGGTGTTCGACGACGACGAGCCGCTGGTCCGCGCGCCGAGGCGTCTCGGGGAGCGGAGGCACGGCGGCGGCGCGGCGAGCGTGGCGTCGGATGGTGGTGGTGGGTCGGCGGTGGCGCTCGCGACGCACTGTGAGAACTCGGCCGTGGCGAGGGACGCGTGTCGAGAGGACTTCGCGGTGCTCGTCCACGCCAGGGCTCCTACGGGCGGTGGCGGCGGCGCCGCCGCCGAGGCGCAGCGGGCGCCGCTCGACCTGGTGACCGTGCTCGACGTGAGCGGGAGCATGGTGGGGAACAAGCTGGCGCTGCTGAAGCAGGCCATGGGGTTCGTCATCGACAACCTCGGCCCCGGCGACCGCCTCTGCGTCATCTCCTTCTCCTCCGGCGCGAGCCGCCTGATGCGGCTGTCGCGCATGACCGACGCCGGCAAGGCCCACGCGAAGCGCGCCGTGGGGTCCCTCTCGGCGCGCGGCGGCACCAACATCGGGGCGGCGCTCCGCAAGGCCGCCAAGGTGCTCGACGACCGGCTCTACCGGAACGCCGTCGAGAGCGTCATCCTCCTCTCCGACGGCCAGGACACGTACACCGTGCCGCCGCGCGGCGGCTACGACCGCGACGCCAACTACGACGCGCTCGTGCCGCCGTCCTTGGTGCGCGCCGACGCCGGCGGCGGCGGCGGCCGCGCCCCGCCGGTCCACACGTTCGGCTTCGGCAAGGACCACGACGCGGCGGCGATGCACACCATCGCCGAGGTCACCGGCGGCACGTTCTCCTTCATCGAGAACGAGGCGGCCATCCAGGACGGGTTCGCGCAGTGCATCGGTGGCCTCCTCTCCGTCGCCGTGCAGGAGCTCCGCCTCGACGTCGCGTGCGTGGACACGGGCGTCCGCGTCACGGCGGTCAAGTCCGGCCGCTACAAGAGCCACATCGAAGACGACGGCCGCGCCGCCAAGGTCGACGTCGGCGAGCTCTACGCCGACGAGGAGAGGAGCTTCCTGCTGTTCGTCGTCGTCCCGAGAGCCCCCGCCTGGGATGACGTCACCCACCTGATCGAAGTAAGCTGCTCTTACCGAGACATGGAGACCGGACGGACCACGAGCGTGGCCGGCGACGAGGAGGCGGTGGTGCTCAGGCCGTCGCGGGCGGAGTCCGGCGTCGCCGAGCGCTCCGTGGAGGTGGACCGGGAGCTTGTCCGGGTGGAAGCCATCGACGACATCGCGCTGGCGCGGGCGGCGGCGGAGCGCGGCGAGTACGCGGAGGCGGCGGAGATCCTCCGGAGCAGGCAGCGCGCGGTGGCGCGGTCCGCCGCGGCGCGCGCCGGGGACGCCATGTGCGCGGCGCTGTCCGGGGAGCTGCGGGAGATGCGCGCCCGCGTGGCGGACCGGCGGCAGTACGAGCTGTCCGGGCGCGCGTACGTGCTCGCCGGGCTGAGCTCGCACGCGCAGCAGCGCGCCACGTCGAGGCAGATGTCCGGCGAGGTGGCGCCGCGCCGCCACGCTCACGGCGGAGGCGGGGGATCGTCGGAGCTCCCGACGGGGATCACCGTGTCGTACGTGACGCCGGCGATGCTGGACATGCTCGACCGGTCGCGCAGGTCGCGGGAGCTGACGCGGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCGGGACAGGGAGAGGAGAAGAAGCTAG
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| Protein seq | MDSAPCGICHGDMRRGGRGGGDAVFTAECSHQFHFHCISGTVARGRIACPLCHARWRELPSFRRGNDAAPPGASASASASAAQPFFRPVEPRVFDDDEPLVRAPRRLGERRHGGGAASVASDGGGGSAVALATHCENSAVARDACREDFAVLVHARAPTGGGGGAAAEAQRAPLDLVTVLDVSGSMVGNKLALLKQAMGFVIDNLGPGDRLCVISFSSGASRLMRLSRMTDAGKAHAKRAVGSLSARGGTNIGAALRKAAKVLDDRLYRNAVESVILLSDGQDTYTVPPRGGYDRDANYDALVPPSLVRADAGGGGGRAPPVHTFGFGKDHDAAAMHTIAEVTGGTFSFIENEAAIQDGFAQCIGGLLSVAVQELRLDVACVDTGVRVTAVKSGRYKSHIEDDGRAAKVDVGELYADEERSFLLFVVVPRAPAWDDVTHLIEVSCSYRDMETGRTTSVAGDEEAVVLRPSRAESGVAERSVEVDRELVRVEAIDDIALARAAAERGEYAEAAEILRSRQRAVARSAAARAGDAMCAALSGELREMRARVADRRQYELSGRAYVLAGLSSHAQQRATSRQMSGEVAPRRHAHGGGGGSSELPTGITVSYVTPAMLDMLDRSRRSRELTRPPPPPPQQQQRDRERRRS |
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| Function | Probable E3 ubiquitin-protein ligase WAVH2 [UniProtKB/Swiss-Prot:Q0WQX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g32760 | LOC_Os10g32760.1 | Chr10 | 17155342 | 17157744 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACAGCGCCCCGTGCGGCATCTGCCATGGCGACATGCGCCGCGGCGGCCGCGGCGGCGGCGACGCCGTGTTCACGGCGGAGTGCTCGCACCAGTTCCACTTCCACTGCATCTCCGGCACCGTCGCGCGCGGACGCATCGCCTGCCCGCTCTGCCACGCGCGGTGGCGCGAGCTCCCGTCGTTCCGCCGCGGCAACGACGCGGCGCCGCCGGGCGCGTCCGCGTCGGCGTCGGCGTCGGCGGCGCAGCCGTTCTTTCGGCCTGTGGAGCCACGGGTGTTCGACGACGACGAGCCGCTGGTCCGCGCGCCGAGGCGTCTCGGGGAGCGGAGGCACGGCGGCGGCGCGGCGAGCGTGGCGTCGGATGGTGGTGGTGGGTCGGCGGTGGCGCTCGCGACGCACTGTGAGAACTCGGCCGTGGCGAGGGACGCGTGTCGAGAGGACTTCGCGGTGCTCGTCCACGCCAGGGCTCCTACGGGCGGTGGCGGCGGCGCCGCCGCCGAGGCGCAGCGGGCGCCGCTCGACCTGGTGACCGTGCTCGACGTGAGCGGGAGCATGGTGGGGAACAAGCTGGCGCTGCTGAAGCAGGCCATGGGGTTCGTCATCGACAACCTCGGCCCCGGCGACCGCCTCTGCGTCATCTCCTTCTCCTCCGGCGCGAGCCGCCTGATGCGGCTGTCGCGCATGACCGACGCCGGCAAGGCCCACGCGAAGCGCGCCGTGGGGTCCCTCTCGGCGCGCGGCGGCACCAACATCGGGGCGGCGCTCCGCAAGGCCGCCAAGGTGCTCGACGACCGGCTCTACCGGAACGCCGTCGAGAGCGTCATCCTCCTCTCCGACGGCCAGGACACGTACACCGTGCCGCCGCGCGGCGGCTACGACCGCGACGCCAACTACGACGCGCTCGTGCCGCCGTCCTTGGTGCGCGCCGACGCCGGCGGCGGCGGCGGCCGCGCCCCGCCGGTCCACACGTTCGGCTTCGGCAAGGACCACGACGCGGCGGCGATGCACACCATCGCCGAGGTCACCGGCGGCACGTTCTCCTTCATCGAGAACGAGGCGGCCATCCAGGACGGGTTCGCGCAGTGCATCGGTGGCCTCCTCTCCGTCGCCGTGCAGGAGCTCCGCCTCGACGTCGCGTGCGTGGACACGGGCGTCCGCGTCACGGCGGTCAAGTCCGGCCGCTACAAGAGCCACATCGAAGACGACGGCCGCGCCGCCAAGGTCGACGTCGGCGAGCTCTACGCCGACGAGGAGAGGAGCTTCCTGCTGTTCGTCGTCGTCCCGAGAGCCCCCGCCTGGGATGACGTCACCCACCTGATCGAAGTAAGCTGCTCTTACCGAGACATGGAGACCGGACGGACCACGAGCGTGGCCGGCGACGAGGAGGCGGTGGTGCTCAGGCCGTCGCGGGCGGAGTCCGGCGTCGCCGAGCGCTCCGTGGAGGTGGACCGGGAGCTTGTCCGGGTGGAAGCCATCGACGACATCGCGCTGGCGCGGGCGGCGGCGGAGCGCGGCGAGTACGCGGAGGCGGCGGAGATCCTCCGGAGCAGGCAGCGCGCGGTGGCGCGGTCCGCCGCGGCGCGCGCCGGGGACGCCATGTGCGCGGCGCTGTCCGGGGAGCTGCGGGAGATGCGCGCCCGCGTGGCGGACCGGCGGCAGTACGAGCTGTCCGGGCGCGCGTACGTGCTCGCCGGGCTGAGCTCGCACGCGCAGCAGCGCGCCACGTCGAGGCAGATGTCCGGCGAGGTGGCGCCGCGCCGCCACGCTCACGGCGGAGGCGGGGGATCGTCGGAGCTCCCGACGGGGATCACCGTGTCGTACGTGACGCCGGCGATGCTGGACATGCTCGACCGGTCGCGCAGGTCGCGGGAGCTGACGCGGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCGGGACAGGGAGAGGAGAAGAAGCTAG
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| Protein seq | MDSAPCGICHGDMRRGGRGGGDAVFTAECSHQFHFHCISGTVARGRIACPLCHARWRELPSFRRGNDAAPPGASASASASAAQPFFRPVEPRVFDDDEPLVRAPRRLGERRHGGGAASVASDGGGGSAVALATHCENSAVARDACREDFAVLVHARAPTGGGGGAAAEAQRAPLDLVTVLDVSGSMVGNKLALLKQAMGFVIDNLGPGDRLCVISFSSGASRLMRLSRMTDAGKAHAKRAVGSLSARGGTNIGAALRKAAKVLDDRLYRNAVESVILLSDGQDTYTVPPRGGYDRDANYDALVPPSLVRADAGGGGGRAPPVHTFGFGKDHDAAAMHTIAEVTGGTFSFIENEAAIQDGFAQCIGGLLSVAVQELRLDVACVDTGVRVTAVKSGRYKSHIEDDGRAAKVDVGELYADEERSFLLFVVVPRAPAWDDVTHLIEVSCSYRDMETGRTTSVAGDEEAVVLRPSRAESGVAERSVEVDRELVRVEAIDDIALARAAAERGEYAEAAEILRSRQRAVARSAAARAGDAMCAALSGELREMRARVADRRQYELSGRAYVLAGLSSHAQQRATSRQMSGEVAPRRHAHGGGGGSSELPTGITVSYVTPAMLDMLDRSRRSRELTRPPPPPPQQQQRDRERRRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.350392 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0464800 | SBH | 0.0 | 0.794024 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g04890 | SBH | 0.304807 | 0.186909 | 0.164239 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0464800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0013740 | SBH | 0.047211 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0013950 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013440 | RBH | 0.0 | 0.554870 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0013790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013640 | SBH | 0.0 | 0.859409 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0284700 | RBH | 0.079545 | 2.4415625 | 0.039135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0013670 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0306200 | RBH | 0.627178 | 19.212001 | 0.12321 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013410 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0013280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013660 | SBH | 0.000000 | 2.270265 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013370 | SBH | 0.0 | 0.0 | 0.109994 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0013920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013640 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013580 | SBH | 0.0 | 0.0 | 0.0 |
