Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g30600 | OGI:10050970 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:15920835-15923997 | ||||||||
| Gene Symbol | RLCK301, OsRLCK301 | ||||||||||
| DNA seq | GGAACTAATGAGCTTCAGCCATTGCCTGAAAATTCTTATTTGCTGTATAAATACAGCTCAGAGTCATTCAGCAAAACAAAGTTAAACTGTACAGTGATATTTCTACTCCAAAAAGGACTACTTGAGCTTTGATTTTTCTAGCTCTGGTAAAAAACATGGAGCCTCCAACCGTATAGAGAAGATCACCTGTGTGTGATCCACAACATTCAGACCTACCCATTATTTAGTAAATCCTTGTTGTTTTCTCTACTAGCTAAGAAAGGTTGAGCCATGCAGGAATATCTTTATGCCATGTCATTGTGTTCTGACAAGTTTGGGTCTCCATCTCTGCCATGTAAACCATCTCTGATCCCCTCCAGCTTTAATATCAGCAAATCTTCTCTTCAGGTCAAGCCCTTTTCGTTTCTTCTCATCACGCGTCAGCTCTCTTGACTTGCTGATGAGGGGATGCTCCGGCGTTCCGAGGTCAGTGCTATCGACGATCTTCTGCACCATCTCCAGCACCTCGCTCATCTTTGGCCGGTGCCTGGCGTGGCGCACGAGGCACTTGTTTGCCACCGAGGCGAGCTTGGCCGCCGACTTCAAGCTGTAACTCCCTTCAAGCCTTGGATCCATTATGATTTCAAGCTTCTTTGAGTCAGTGGAGTAGGGCTTCACCCACTCTATGAGGTTCTGTTCGCCTCTCGGCCTGTTCCTGTCCAGAGGTCGCCGACCGGTAAGGAGTTCGTAGAGCACCACGCCGTAGCTCCATATGTCGTTCTTGCTGCTGAGGCGCCCTGTGTGGATGTACTCTGGAGCTGCATACCCAATAGTTCCCACCACCTGTTAAAAGAGGATTTCCAGAAGAGACATTAGCAAACCTACCTAGCTGTTCAAACTATGAAGACATTGCTAGTGGATTGCAGAATGTTAGAAAAACGTGTGATCATCACTGATCAAATGTTTGGAATTGGAGAACAGCCAGAAAGCTACTAAGTTGATGTTAACCAATCAGCAAAAAAAAGGCACCTGCCCTTTCTGACCGGTCCTTGTGCACTAGCACACAGACTAACCGAAAGTGCCTATCCATGTCCTGTGTTGGGTTGGTTTTTTCCTATCACTGTGTTGTGTCAATTTGTTGTTTTTGCGGGCCACTAACTGGTTGATCAGATCAAGATGACAAAATGGTTCTATGTTGGAACAGTAACAGGCTAACAGCCATTGTGTTTGCTGCTTGTCTTCAGGAAAGGAAGAACTACACCCAAGGTGTTCTACCACGGATTGTCTACCGAGCAACATCGAATGTTTAACCTCTGAAATCAGTCATATCATTCAAAATGCCTGCATTTTGCAGTTGAGAACAGGTGCCCTAAGGAACTCTAAATGCTGGGCAAAAAAATGATAGGTTTTCTTGTCACGTACCGCAGTGGAGACATGGCTGCCATCCTGAGATACCAGTCTAGCCAATCCGAAGTCTGACAGCTTCGCGTTCCAGTTCTCGTCGATCAGAATGTTGGAAGGCTTCAGATCACGAAATATTATCTGGAAGATCATCGCATCGCATCGCATCGCATCAATGCAGGTGATGTCAGGCCAGCCAGTAATTAATCAAACAAGTGAGGCAGAGCAATCAGGGCAATTTCTGAATTTCTGATACTGGACCTTGATTTCAGATTCTTCATGGAGATACTTCAAGCCGCGCGCGGTGTCGAGCGCCACCCTGAGCCGCATCGCCCACGACGCCGGCCTCGGCGACCTCGACGACAGGTGATCTGCCAGGCTCCCGTTGGGCATGAACTCGTAGACGAGCAGCAGCTGCATCCCCCTCTCGTCGTCCTCGGCGCAGTACCCGATGAGCTTCACCAGGTTCGGATGATCCACCACCCCAAGAACGTTCACCTCCGTCACCCACTCCTTATGCCCCTGCGTTCACCATCACAAATTCAATTCACAACATCAAATCAAATTCTAGCCTTACTTGTTCATGCTCAGAATCGTCGACGAGAGCTCTGATACCATGTTGAGAATTATTGGTTACCTGTAGGCCTTTGCGGCCGAGCTGCTTGATGGCGACCTCGACGCTCCGGCGAGGCTCGAGGACGCTGCGGATGGTGCCGCGGTAGACGCAGCCGAAGCCGCCCTCGCCGAGCACCAGCGAGCGGCTGAACCCGCGGGTGGCGCTCTTGAGCTCCTGGAAGGTGAAGATGCGGAGGTTGTTGCTCGCGCGCTGCGGCAGCGACAGCTGCCGGTACCGGCCGAACGACTCGGCGCTGATCTCCGACGACACGTTCAGGGAGCACTCCGACCCCGACCGCCGCGCGTCGCGGTCCGTCGACGTGCTGCTGTTGGACCGCGCCGACAGCGAACGCGTCGTCGCCGCCGCCGCCGAGGCCACCGCCGACGACCGGCCACGCCGCTCATCCCTCTCCCAGCCGGCGAACCCGAAGCACTGCATCGCCTTCGACATGCTCCCCGGAGAAGACGACGACGACACCTCTCCTGCTCTGCACCAACGTCGCGGGCGCCGGAAGAAAGGTCAGTGACTCAGTTCATGCGCAACATTAATCATTGACGACAACTGAAATGGGAAAAGAAATAGTTCTAATCAAGCCGGAAAGGAAAAGAAACTAAAAGCTTTTCGTAGTTTAGTTTGCCACTGATCAACTTTATGCTTTCCAAAGAAACAAAAGATTTCTCCTTTCAATCTTAATAACATTTGGTCAGCCATCCTTTCGACCGACCCGGCAAAAAAAGAAGAAAGGAAGAAAAAGAAACAAAAGATATCATCACATCTCATTTTAAATGGAAAAGGGCAAATAAATTTAGGCTGGCAGAGAAAAGGATCGATCACCAATCACACATCCAGCAAATCTCAACGGAGAGAAAAGAAGAAAACAATTGATGATCAGCCATGGGCAGAAGAACTCCCATCGTCGTCAATGGCCGTCCTAACCCACCTCCAACAAACGAATCATCCCCCACCCAATCAACCAAGCAACTAACCAACCAAAAGCTTCATCCCTCTCTTTGCTCACCTGTGTGGCATGTGTTACGAGCTCAGCCGCCTCCGCATGGAGAAGAAGACGACGACCTCGGATCTCGCCTCACCGGGAAGACGAGTAAAGAGAGAAAGAGAGAGAGAGGAAGAAGATGATGCACTTTGTGTGCGGCTAACGGGTCAACA
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| CDS seq | ATGCCACACAGAGCAGGAGAGGTGTCGTCGTCGTCTTCTCCGGGGAGCATGTCGAAGGCGATGCAGTGCTTCGGGTTCGCCGGCTGGGAGAGGGATGAGCGGCGTGGCCGGTCGTCGGCGGTGGCCTCGGCGGCGGCGGCGACGACGCGTTCGCTGTCGGCGCGGTCCAACAGCAGCACGTCGACGGACCGCGACGCGCGGCGGTCGGGGTCGGAGTGCTCCCTGAACGTGTCGTCGGAGATCAGCGCCGAGTCGTTCGGCCGGTACCGGCAGCTGTCGCTGCCGCAGCGCGCGAGCAACAACCTCCGCATCTTCACCTTCCAGGAGCTCAAGAGCGCCACCCGCGGGTTCAGCCGCTCGCTGGTGCTCGGCGAGGGCGGCTTCGGCTGCGTCTACCGCGGCACCATCCGCAGCGTCCTCGAGCCTCGCCGGAGCGTCGAGGTCGCCATCAAGCAGCTCGGCCGCAAAGGCCTACAGGGGCATAAGGAGTGGGTGACGGAGGTGAACGTTCTTGGGGTGGTGGATCATCCGAACCTGGTGAAGCTCATCGGGTACTGCGCCGAGGACGACGAGAGGGGGATGCAGCTGCTGCTCGTCTACGAGTTCATGCCCAACGGGAGCCTGGCAGATCACCTGTCGTCGAGGTCGCCGAGGCCGGCGTCGTGGGCGATGCGGCTCAGGGTGGCGCTCGACACCGCGCGCGGCTTGAAGTATCTCCATGAAGAATCTGAAATCAAGATAATATTTCGTGATCTGAAGCCTTCCAACATTCTGATCGACGAGAACTGGAACGCGAAGCTGTCAGACTTCGGATTGGCTAGACTGGTATCTCAGGATGGCAGCCATGTCTCCACTGCGGTGGTGGGAACTATTGGGTATGCAGCTCCAGAGTACATCCACACAGGGCGCCTCAGCAGCAAGAACGACATATGGAGCTACGGCGTGGTGCTCTACGAACTCCTTACCGGTCGGCGACCTCTGGACAGGAACAGGCCGAGAGGCGAACAGAACCTCATAGAGTGGGTGAAGCCCTACTCCACTGACTCAAAGAAGCTTGAAATCATAATGGATCCAAGGCTTGAAGGGAGTTACAGCTTGAAGTCGGCGGCCAAGCTCGCCTCGGTGGCAAACAAGTGCCTCGTGCGCCACGCCAGGCACCGGCCAAAGATGAGCGAGGTGCTGGAGATGGTGCAGAAGATCGTCGATAGCACTGACCTCGGAACGCCGGAGCATCCCCTCATCAGCAAGTCAAGAGAGCTGACGCGTGATGAGAAGAAACGAAAAGGGCTTGACCTGAAGAGAAGATTTGCTGATATTAAAGCTGGAGGGGATCAGAGATGGTTTACATGGCAGAGATGGAGACCCAAACTTGTCAGAACACAATGA
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| Protein seq | MPHRAGEVSSSSSPGSMSKAMQCFGFAGWERDERRGRSSAVASAAAATTRSLSARSNSSTSTDRDARRSGSECSLNVSSEISAESFGRYRQLSLPQRASNNLRIFTFQELKSATRGFSRSLVLGEGGFGCVYRGTIRSVLEPRRSVEVAIKQLGRKGLQGHKEWVTEVNVLGVVDHPNLVKLIGYCAEDDERGMQLLLVYEFMPNGSLADHLSSRSPRPASWAMRLRVALDTARGLKYLHEESEIKIIFRDLKPSNILIDENWNAKLSDFGLARLVSQDGSHVSTAVVGTIGYAAPEYIHTGRLSSKNDIWSYGVVLYELLTGRRPLDRNRPRGEQNLIEWVKPYSTDSKKLEIIMDPRLEGSYSLKSAAKLASVANKCLVRHARHRPKMSEVLEMVQKIVDSTDLGTPEHPLISKSRELTRDEKKRKGLDLKRRFADIKAGGDQRWFTWQRWRPKLVRTQ |
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| Function | Serine/threonine-protein kinase PCRK2 [UniProtKB/Swiss-Prot:Q9LZF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g30600 | LOC_Os10g30600.1 | Chr10 | 15920835 | 15923997 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCACACAGAGCAGGAGAGGTGTCGTCGTCGTCTTCTCCGGGGAGCATGTCGAAGGCGATGCAGTGCTTCGGGTTCGCCGGCTGGGAGAGGGATGAGCGGCGTGGCCGGTCGTCGGCGGTGGCCTCGGCGGCGGCGGCGACGACGCGTTCGCTGTCGGCGCGGTCCAACAGCAGCACGTCGACGGACCGCGACGCGCGGCGGTCGGGGTCGGAGTGCTCCCTGAACGTGTCGTCGGAGATCAGCGCCGAGTCGTTCGGCCGGTACCGGCAGCTGTCGCTGCCGCAGCGCGCGAGCAACAACCTCCGCATCTTCACCTTCCAGGAGCTCAAGAGCGCCACCCGCGGGTTCAGCCGCTCGCTGGTGCTCGGCGAGGGCGGCTTCGGCTGCGTCTACCGCGGCACCATCCGCAGCGTCCTCGAGCCTCGCCGGAGCGTCGAGGTCGCCATCAAGCAGCTCGGCCGCAAAGGCCTACAGGGGCATAAGGAGTGGGTGACGGAGGTGAACGTTCTTGGGGTGGTGGATCATCCGAACCTGGTGAAGCTCATCGGGTACTGCGCCGAGGACGACGAGAGGGGGATGCAGCTGCTGCTCGTCTACGAGTTCATGCCCAACGGGAGCCTGGCAGATCACCTGTCGTCGAGGTCGCCGAGGCCGGCGTCGTGGGCGATGCGGCTCAGGGTGGCGCTCGACACCGCGCGCGGCTTGAAGTATCTCCATGAAGAATCTGAAATCAAGATAATATTTCGTGATCTGAAGCCTTCCAACATTCTGATCGACGAGAACTGGAACGCGAAGCTGTCAGACTTCGGATTGGCTAGACTGGTATCTCAGGATGGCAGCCATGTCTCCACTGCGGTGGTGGGAACTATTGGGTATGCAGCTCCAGAGTACATCCACACAGGGCGCCTCAGCAGCAAGAACGACATATGGAGCTACGGCGTGGTGCTCTACGAACTCCTTACCGGTCGGCGACCTCTGGACAGGAACAGGCCGAGAGGCGAACAGAACCTCATAGAGTGGGTGAAGCCCTACTCCACTGACTCAAAGAAGCTTGAAATCATAATGGATCCAAGGCTTGAAGGGAGTTACAGCTTGAAGTCGGCGGCCAAGCTCGCCTCGGTGGCAAACAAGTGCCTCGTGCGCCACGCCAGGCACCGGCCAAAGATGAGCGAGGTGCTGGAGATGGTGCAGAAGATCGTCGATAGCACTGACCTCGGAACGCCGGAGCATCCCCTCATCAGCAAGTCAAGAGAGCTGACGCGTGATGAGAAGAAACGAAAAGGGCTTGACCTGAAGAGAAGATTTGCTGATATTAAAGCTGGAGGGGATCAGAGATGGTTTACATGGCAGAGATGGAGACCCAAACTTGTCAGAACACAATGA
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| Protein seq | MPHRAGEVSSSSSPGSMSKAMQCFGFAGWERDERRGRSSAVASAAAATTRSLSARSNSSTSTDRDARRSGSECSLNVSSEISAESFGRYRQLSLPQRASNNLRIFTFQELKSATRGFSRSLVLGEGGFGCVYRGTIRSVLEPRRSVEVAIKQLGRKGLQGHKEWVTEVNVLGVVDHPNLVKLIGYCAEDDERGMQLLLVYEFMPNGSLADHLSSRSPRPASWAMRLRVALDTARGLKYLHEESEIKIIFRDLKPSNILIDENWNAKLSDFGLARLVSQDGSHVSTAVVGTIGYAAPEYIHTGRLSSKNDIWSYGVVLYELLTGRRPLDRNRPRGEQNLIEWVKPYSTDSKKLEIIMDPRLEGSYSLKSAAKLASVANKCLVRHARHRPKMSEVLEMVQKIVDSTDLGTPEHPLISKSRELTRDEKKRKGLDLKRRFADIKAGGDQRWFTWQRWRPKLVRTQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g30600 | LOC_Os10g30600.2 | Chr10 | 15921129 | 15923982 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGAAGGCGATGCAGTGCTTCGGGTTCGCCGGCTGGGAGAGGGATGAGCGGCGTGGCCGGTCGTCGGCGGTGGCCTCGGCGGCGGCGGCGACGACGCGTTCGCTGTCGGCGCGGTCCAACAGCAGCACGTCGACGGACCGCGACGCGCGGCGGTCGGGGTCGGAGTGCTCCCTGAACGTGTCGTCGGAGATCAGCGCCGAGTCGTTCGGCCGGTACCGGCAGCTGTCGCTGCCGCAGCGCGCGAGCAACAACCTCCGCATCTTCACCTTCCAGGAGCTCAAGAGCGCCACCCGCGGGTTCAGCCGCTCGCTGGTGCTCGGCGAGGGCGGCTTCGGCTGCGTCTACCGCGGCACCATCCGCAGCGTCCTCGAGCCTCGCCGGAGCGTCGAGGTCGCCATCAAGCAGCTCGGCCGCAAAGGCCTACAGGGGCATAAGGAGTGGGTGACGGAGGTGAACGTTCTTGGGGTGGTGGATCATCCGAACCTGGTGAAGCTCATCGGGTACTGCGCCGAGGACGACGAGAGGGGGATGCAGCTGCTGCTCGTCTACGAGTTCATGCCCAACGGGAGCCTGGCAGATCACCTGTCGTCGAGGTCGCCGAGGCCGGCGTCGTGGGCGATGCGGCTCAGGGTGGCGCTCGACACCGCGCGCGGCTTGAAGTATCTCCATGAAGAATCTGAAATCAAGATAATATTTCGTGATCTGAAGCCTTCCAACATTCTGATCGACGAGAACTGGAACGCGAAGCTGTCAGACTTCGGATTGGCTAGACTGGTATCTCAGGATGGCAGCCATGTCTCCACTGCGGTGGTGGGAACTATTGGGTATGCAGCTCCAGAGTACATCCACACAGGGCGCCTCAGCAGCAAGAACGACATATGGAGCTACGGCGTGGTGCTCTACGAACTCCTTACCGGTCGGCGACCTCTGGACAGGAACAGGCCGAGAGGCGAACAGAACCTCATAGAGTGGGTGAAGCCCTACTCCACTGACTCAAAGAAGCTTGAAATCATAATGGATCCAAGGCTTGAAGGGAGTTACAGCTTGAAGTCGGCGGCCAAGCTCGCCTCGGTGGCAAACAAGTGCCTCGTGCGCCACGCCAGGCACCGGCCAAAGATGAGCGAGGTGCTGGAGATGGTGCAGAAGATCGTCGATAGCACTGACCTCGGAACGCCGGAGCATCCCCTCATCAGCAAGTCAAGAGAGCTGACGCGTGATGAGAAGAAACGAAAAGGGCTTGACCTGAAGAGAAGATTTGCTGATATTAAAGCTGGAGGGGATCAGAGATGGTTTACATGGCAGAGATGGAGACCCAAACTTGTCAGAACACAATGA
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| Protein seq | MSKAMQCFGFAGWERDERRGRSSAVASAAAATTRSLSARSNSSTSTDRDARRSGSECSLNVSSEISAESFGRYRQLSLPQRASNNLRIFTFQELKSATRGFSRSLVLGEGGFGCVYRGTIRSVLEPRRSVEVAIKQLGRKGLQGHKEWVTEVNVLGVVDHPNLVKLIGYCAEDDERGMQLLLVYEFMPNGSLADHLSSRSPRPASWAMRLRVALDTARGLKYLHEESEIKIIFRDLKPSNILIDENWNAKLSDFGLARLVSQDGSHVSTAVVGTIGYAAPEYIHTGRLSSKNDIWSYGVVLYELLTGRRPLDRNRPRGEQNLIEWVKPYSTDSKKLEIIMDPRLEGSYSLKSAAKLASVANKCLVRHARHRPKMSEVLEMVQKIVDSTDLGTPEHPLISKSRELTRDEKKRKGLDLKRRFADIKAGGDQRWFTWQRWRPKLVRTQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.624402 | 1.233921 | 1.370270 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0442800 | RBH | 2.350440 | 1.837631 | 5.328635 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05470 | RBH | 0.623241 | 1.014616 | 0.262277 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0442800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012390 | RBH | 0.383189 | 14.262184 | 5.070402 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012600 | RBH | 0.406569 | 4.083200 | 1.862930 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012330 | RBH | 0.644367 | 8.284518 | 3.399626 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012600 | RBH | 0.075345 | 0.237771 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012350 | RBH | 0.000000 | 5.441634 | 7.831400 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0265400 | RBH | 3.5588465 | 17.350581 | 8.24917 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012380 | RBH | 0.100351 | 0.954505 | 0.740148 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0285400 | RBH | 5.5663125 | 17.0128825 | 1.733899 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012120 | RBH | 0.066029 | 0.322391 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012090 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012510 | RBH | 0.0 | 17.934031 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012110 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012610 | RBH | 0.000000 | 6.585209 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012460 | RBH | 0.293014 | 1.329185 | 2.024653 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012400 | RBH | 1.010090 | 32.692970 | 5.406643 |
